[Wrf-users] very cold bias in 3.8.1

kostas markakis konstantinos.markakis at lmd.polytechnique.fr
Wed Nov 2 03:56:22 MDT 2016


Good morning to everyone,

I am experiencing a strange behaviour of a very cold temperature bias 
when using WRF 3.8.1 (em_real case). I have run the same simulation with 
version 3.6.1 and i am getting a bias of -1o Celsius. With 3.8.1 i get 
-7. Has anyone had similar behaviour? I attach my namelist. My domain is 
the area around Paris, France the topography is relatively flat, away 
from coastal areas. I am using the BEP urban model. I have tried 
additionally 2 configurations (changing some schemes with no urban 
model) only with 3.8.1 and i always get a very cold bias in the order of 
-5,-6.

I have to note two things:

1) with the 3.8.1 version i get this strange message in metgrid:

"Note: The following floating-point exceptions are signalling: 
IEEE_OVERFLOW_FLAG IEEE_UNDERFLOW_FLAG IEEE_DENORMAL"

2) i never managed to compile WRF3.8.1 with the default flags in 
configure.wrf. In order to work i had to include several new flags (i 
attach my configure.wrf)

Thanks in advance

-- 

Konstantinos Markakis
Post-doctoral researcher
LMD (Laboratoire de Meteorologie Dynamique), IPSL
Université Pierre et Marie Curie, 4 Place Jussieu
e-mail: konstantinos.markakis at lmd.polytechnique.fr

-------------- next part --------------
 &time_control
 run_days                            = 0
 run_hours                           = 0
 run_minutes                         = 0
 run_seconds                         = 0
 start_year                          = 2012, 2012, 2012
 start_month                         = 03, 03, 03
 start_day                           = 01, 01, 01
 start_hour                          = 00, 00, 00
 start_minute                        = 00, 00, 00
 start_second                        = 00, 00, 00
 end_year                            = 2012, 2012, 2012
 end_month                           = 03, 03, 03
 end_day                             = 06, 06, 06
 end_hour                            = 00, 00, 00
 end_minute                          = 00, 00, 00
 end_second                          = 00, 00, 00
 interval_seconds                    = 21600
 input_from_file                     = .true., .true., .true.
 history_interval                    = 60, 60, 60
 frames_per_outfile                  = 121, 121, 121
 restart                             = .false.,
 restart_interval                    = 1440 
 write_hist_at_0h_rst                = .true.
 debug_level                         = 0

 /
 &domains
 time_step                           = 100
 max_dom                             = 3,
 dx                                  = 50000, 10000, 2000
 dy                                  = 50000, 10000, 2000
 s_we                                = 1,1,1
 e_we                                = 40,76,101
 s_sn                                = 1,1,1
 e_sn                                = 40,76,86
 s_vert                              = 1,1,1
 e_vert                              = 32,32,32
 num_metgrid_levels                  = 27
 grid_id                             = 1,2,3
 parent_id                           = 0,1,2
 i_parent_start                      = 1,13,29
 j_parent_start                      = 1,13,28
 parent_grid_ratio                   = 1,5,5
 parent_time_step_ratio              = 1,5,5
 feedback                            = 1
 smooth_option                       = 1
 hypsometric_opt                     = 1

 /
 &physics
 mp_physics                          = 6,6,6
 ra_lw_physics                       = 4,4,4
 ra_sw_physics                       = 4,4,4
 radt                                = 50, 10, 2
 sf_sfclay_physics                   = 2,2,2
 sf_surface_physics                  = 2,2,2
 sf_urban_physics                    = 2,2,2
 bl_pbl_physics                      = 2,2,2
 bldt                                = 0,
 cu_physics                          = 5,5,5
 cudt                                = 0,
 cu_rad_feedback                     = .true.
 cu_diag                             = 1
 isfflx                              = 1,
 ifsnow                              = 1,
 icloud                              = 1,
 usemonalb                           = .true.
 tmn_update                          = 1,
 sst_update                          = 0,
 sst_skin                            = 1,
 surface_input_source                = 1,
 num_soil_layers                     = 4,
 num_land_cat                        = 21,
 mp_zero_out                         = 0,
 /

 &dynamics
 rk_ord                              = 2,
 w_damping                           = 0,
 diff_opt                            = 1,
 km_opt                              = 1,1,4,
 damp_opt                            = 0,
 epssm                               = 0.5
 non_hydrostatic                     = .true.,
 /

 &bdy_control
 spec_bdy_width                      = 6,
 spec_zone                           = 1,
 relax_zone                          = 5,
 specified                           = .true., .false., .false.
 nested                              = .false., .true., .true.
 spec_exp                            = 0.33
 /
 
 &namelist_quilt
 nio_tasks_per_group = 0,
 nio_groups = 1,
 / 
-------------- next part --------------
# configure.wrf
#
# This file was automatically generated by the configure script in the
# top level directory. You may make changes to the settings in this
# file but be aware they will be overwritten each time you run configure.
# Ordinarily, it is necessary to run configure once, when the code is
# first installed.
#
# To permanently change options, change the settings for your platform
# in the file arch/configure.defaults then rerun configure.
#
SHELL           =       /bin/sh
DEVTOP          =       `pwd`
LIBINCLUDE      =       .
.SUFFIXES: .F .i .o .f90 .c

#### Get core settings from environment (set in compile script)
#### Note to add a core, this has to be added to.

COREDEFS = -DEM_CORE=$(WRF_EM_CORE) -DNMM_CORE=$(WRF_NMM_CORE) -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=$(WRF_COAMPS_CORE) -DDA_CORE=$(WRF_DA_CORE) -DEXP_CORE=$(WRF_EXP_CORE)

#### Single location for defining total number of domains.  You need
#### at least 1 + 2*(number of total nests).  For example, 1 coarse
#### grid + three fine grids = 1 + 2(3) = 7, so MAX_DOMAINS=7.

MAX_DOMAINS	=	21

#### DM buffer length for the configuration flags.

CONFIG_BUF_LEN	=	65536

#### Size of bitmasks (in 4byte integers) of stream masks for WRF I/O

MAX_HISTORY = 25
IWORDSIZE = 4
DWORDSIZE = 8
LWORDSIZE = 4

##############################################################################
#### The settings in this section are defaults that may be overridden by the 
#### architecture-specific settings in the next section.  
##############################################################################

##############################################################################
#### NOTE:  Do not modify these default values here.  To override these 
####        values, make changes after "Architecture specific settings".  
##############################################################################

#### Native size (in bytes) of Fortran REAL data type on this architecture ####
#### Note:  to change real wordsize (for example, to promote REALs from 
####        4-byte to 8-byte), modify the definition of RWORDSIZE in the 
####        section following "Architecture specific settings".  Do not 
####        change NATIVE_RWORDSIZE as is it architecture-specific.  
NATIVE_RWORDSIZE = 4

#### Default sed command and script for Fortran source files ####
#SED_FTN = sed -f $(WRF_SRC_ROOT_DIR)/arch/standard.sed
SED_FTN = $(WRF_SRC_ROOT_DIR)/tools/standard.exe

# Hack to work around $(PWD) not changing during OSF1 build.  
# $(IO_GRIB_SHARE_DIR) is reset during the OSF1 build only.  
IO_GRIB_SHARE_DIR = 

#### ESMF switches                 ####
#### These are set up by Config.pl ####
# switch to use separately installed ESMF library for coupling:  1==true
ESMF_COUPLING       = 0
# select dependences on module_utility.o
ESMF_MOD_DEPENDENCE = $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/module_utility.o
# select -I options for external/io_esmf vs. external/esmf_time_f90
ESMF_IO_INC         = -I$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90
# select -I options for separately installed ESMF library, if present
ESMF_MOD_INC        =  $(ESMF_IO_INC)
# select cpp token for external/io_esmf vs. external/esmf_time_f90
ESMF_IO_DEFS        = 
# select build target for external/io_esmf vs. external/esmf_time_f90
ESMF_TARGET         = esmf_time

# ESMFINCLUDEGOESHERE


#### NETCDF4 pieces

NETCDF4_IO_OPTS = -DUSE_NETCDF4_FEATURES -DWRFIO_NCD_LARGE_FILE_SUPPORT
GPFS            =
CURL            =
HDF5            =
ZLIB            =
DEP_LIB_PATH    = 
NETCDF4_DEP_LIB = $(DEP_LIB_PATH) $(HDF5) $(ZLIB) $(GPFS) $(CURL)

# NETCDF4INCLUDEGOESHERE


##############################################################################

LIBWRFLIB = libwrflib.a


#### Architecture specific settings ####

# Settings for    Linux x86_64 ppc64le, gfortran compiler with gcc   (dmpar)
#
DESCRIPTION     =       GNU ($SFC/$SCC)
DMPARALLEL      =        1
OMPCPP          =       # -D_OPENMP
OMP             =       # -fopenmp
OMPCC           =       # -fopenmp
SFC             =       gfortran
SCC             =       gcc
CCOMP           =       gcc
DM_FC           =       mpif90 -DMPI2_SUPPORT
DM_CC           =       mpicc -DMPI2_SUPPORT
FC              =       time $(DM_FC)
CC              =       $(DM_CC) -DFSEEKO64_OK 
LD              =       $(FC)
RWORDSIZE       =       $(NATIVE_RWORDSIZE)
PROMOTION       =       #-fdefault-real-8
ARCH_LOCAL      =       -DNONSTANDARD_SYSTEM_SUBR -DWRF_USE_CLM -DNO_IEEE_MODULE
CFLAGS_LOCAL    =       -w -O3 -c -Df2cFortran
LDFLAGS_LOCAL   =       
CPLUSPLUSLIB    =       
ESMF_LDFLAG     =       $(CPLUSPLUSLIB)
FCOPTIM         =       -O2 -ftree-vectorize -funroll-loops
FCREDUCEDOPT	=       $(FCOPTIM)
FCNOOPT		    =       -O0
FCDEBUG         =       # -g $(FCNOOPT) # -ggdb -fbacktrace -fcheck=bounds,do,mem,pointer -ffpe-trap=invalid,zero,overflow
FORMAT_FIXED    =       -ffixed-form -cpp
FORMAT_FREE     =       -ffree-form -ffree-line-length-none -cpp
FCSUFFIX        =       
BYTESWAPIO      =       -fconvert=big-endian -frecord-marker=4
FCBASEOPTS_NO_G =       -w $(FORMAT_FREE) $(BYTESWAPIO)
FCBASEOPTS      =       $(FCBASEOPTS_NO_G) $(FCDEBUG)
MODULE_SRCH_FLAG =     
TRADFLAG        =      -traditional
CPP             =      /lib/cpp -P
AR              =      ar
ARFLAGS         =      ru
M4              =      m4 -G
RANLIB          =      ranlib
RLFLAGS		=	
CC_TOOLS        =      $(SCC) 

###########################################################
######################
# POSTAMBLE

FGREP = fgrep -iq

ARCHFLAGS       =    $(COREDEFS) -DIWORDSIZE=$(IWORDSIZE) -DDWORDSIZE=$(DWORDSIZE) -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=$(LWORDSIZE) \
                     $(ARCH_LOCAL) \
                     $(DA_ARCHFLAGS) \
                      -DDM_PARALLEL \
                       \
                      -DNETCDF \
                      -DPNETCDF \
                       \
                       \
                       \
                       \
                      -DHDF5 \
                       \
                       \
                       \
                       \
                      -DUSE_ALLOCATABLES \
                      -DGRIB1 \
                      -DINTIO \
                      -DKEEP_INT_AROUND \
                      -DLIMIT_ARGS \
                      -DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
                      -DMAX_DOMAINS_F=$(MAX_DOMAINS) \
                      -DMAX_HISTORY=$(MAX_HISTORY) \
		              -DNMM_NEST=$(WRF_NMM_NEST)
CFLAGS          =    $(CFLAGS_LOCAL) -DDM_PARALLEL -DMAX_HISTORY=$(MAX_HISTORY) -DNMM_CORE=$(WRF_NMM_CORE)
FCFLAGS         =    $(FCOPTIM) $(FCBASEOPTS)
ESMF_LIB_FLAGS  =    
# ESMF 5 -- these are defined in esmf.mk, included above
ESMF_IO_LIB     =    -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
ESMF_IO_LIB_EXT =    -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
INCLUDE_MODULES =    $(MODULE_SRCH_FLAG) \
                     $(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
                      -I$(WRF_SRC_ROOT_DIR)/main \
                      -I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
                      -I$(WRF_SRC_ROOT_DIR)/external/io_int \
                      -I$(WRF_SRC_ROOT_DIR)/frame \
                      -I$(WRF_SRC_ROOT_DIR)/share \
                      -I$(WRF_SRC_ROOT_DIR)/phys \
                      -I$(WRF_SRC_ROOT_DIR)/inc \
                      -I$(NETCDFPATH)/include \
                      -I$(NETCDF_C)/include \
                      
REGISTRY        =    Registry
CC_TOOLS_CFLAGS = -DNMM_CORE=$(WRF_NMM_CORE)

LIB_BUNDLED     = $(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5/libfftpack.a \
                  $(WRF_SRC_ROOT_DIR)/external/io_grib1/libio_grib1.a \
                  $(WRF_SRC_ROOT_DIR)/external/io_grib_share/libio_grib_share.a \
                  $(WRF_SRC_ROOT_DIR)/external/io_int/libwrfio_int.a \
                  $(ESMF_IO_LIB) \
                  $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a \
                  $(WRF_SRC_ROOT_DIR)/frame/module_internal_header_util.o \
                  $(WRF_SRC_ROOT_DIR)/frame/pack_utils.o 

LIB_EXTERNAL    = -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L/home/kmarkaki/packages/netcdf-f_4.4.4/lib -lnetcdff -L/home/kmarkaki/packages/netcdf-c_4.4.1/lib -lnetcdf -L$(WRF_SRC_ROOT_DIR)/external/io_pnetcdf -lwrfio_pnf -L/home/kmarkaki/packages/pnetcdf_1.7.0/lib -lpnetcdf -L/home/kmarkaki/packages/hdf5_1.10.0/lib -lhdf5 -lm -lz

LIB             =    $(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL) $(LIB_WRF_HYDRO)
LDFLAGS         =    $(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL) 
ENVCOMPDEFS     =    
WRF_CHEM	=	0 
CPPFLAGS        =    $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG) 
NETCDFPATH      =    /home/kmarkaki/packages/netcdf-f_4.4.4
HDF5PATH        =    /home/kmarkaki/packages/hdf5_1.10.0
WRFPLUSPATH     =    
RTTOVPATH       =    
PNETCDFPATH     =    /home/kmarkaki/packages/pnetcdf_1.7.0

bundled:  io_only 
external: io_only $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a gen_comms_rsllite module_dm_rsllite $(ESMF_TARGET)
io_only:  esmf_time wrfio_nf wrfio_pnf wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int fftpack


######################
externals: io_only bundled external

gen_comms_serial :
	( /bin/rm -f $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c )

module_dm_serial :
	( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; cat module_dm_stubs.F >> module_dm.F ; fi )

gen_comms_rsllite :
	( if [ ! -e $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ] ; then \
          /bin/cp $(WRF_SRC_ROOT_DIR)/tools/gen_comms_warning $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; \
          cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/gen_comms.c >> $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; fi )

module_dm_rsllite :
	( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; \
          cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/module_dm.F >> module_dm.F ; fi )

wrfio_nf : 
	( cd $(WRF_SRC_ROOT_DIR)/external/io_netcdf ; \
          make $(J) NETCDFPATH="$(NETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
          CC="$(SCC)" CFLAGS="$(CFLAGS)" \
          FC="$(SFC) $(PROMOTION) $(OMP) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

wrfio_pnf : 
	( cd $(WRF_SRC_ROOT_DIR)/external/io_pnetcdf ; \
          make $(J) NETCDFPATH="$(PNETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP) $(ARCHFLAGS)" \
          FC="$(FC) $(PROMOTION) $(OMP) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

wrfio_grib_share :
	( cd $(WRF_SRC_ROOT_DIR)/external/io_grib_share ; \
          make $(J) CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
          FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive) 

wrfio_grib1 :
	( cd $(WRF_SRC_ROOT_DIR)/external/io_grib1 ; \
          make $(J) CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
          FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)

wrfio_grib2 :
	( cd $(WRF_SRC_ROOT_DIR)/external/io_grib2 ; \
          make $(J) CC="$(SCC)" CFLAGS="$(CFLAGS) " RM="$(RM)" RANLIB="$(RANLIB)" \
          CPP="$(CPP)" \
          FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="-traditional" AR="$(AR)" ARFLAGS="$(ARFLAGS)" \
          FIXED="$(FORMAT_FIXED)" archive)

wrfio_int : 
	( cd $(WRF_SRC_ROOT_DIR)/external/io_int ; \
          make $(J) CC="$(CC)" CFLAGS_LOCAL="$(CFLAGS_LOCAL)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
          FC="$(FC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS) $(OMP)" FGREP="$(FGREP)" \
          TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ARCHFLAGS="$(ARCHFLAGS)" all )

esmf_time : 
	( cd $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 ; \
          make $(J) FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \
          CPP="$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

fftpack :
	( cd $(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5 ; \
          make $(J) FC="$(SFC)" FFLAGS="$(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" AR="$(AR)" \
          ARFLAGS="$(ARFLAGS)" CPP="$(CPP)" CPPFLAGS="$(CPPFLAGS)" RM="$(RM)" )

atm_ocn :
	( cd $(WRF_SRC_ROOT_DIR)/external/atm_ocn ; \
          make $(J) CC="$(SCC)" CFLAGS="$(CFLAGS) " RM="$(RM)" RANLIB="$(RANLIB)" \
          CPP="$(CPP)" CPPFLAGS="$(CPPFLAGS)" \
          FC="$(DM_FC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="-traditional" AR="$(AR)" ARFLAGS="$(ARFLAGS)" \
          FIXED="$(FORMAT_FIXED)" )

$(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a :
	( cd $(WRF_SRC_ROOT_DIR)/external/RSL_LITE ; make $(J) CC="$(CC) $(CFLAGS)" \
          FC="$(FC) $(FCFLAGS) $(OMP) $(PROMOTION) $(BYTESWAPIO)" \
          CPP="$(CPP) -I. $(ARCHFLAGS) $(OMPCPP) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ;\
          $(RANLIB) $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a )

######################
#	Macros, these should be generic for all machines

LN	=	ln -sf
MAKE	=	make -i -r
RM	= 	rm -f


# These sub-directory builds are identical across all architectures

wrf_ioapi_includes :
	( cd $(WRF_SRC_ROOT_DIR)/external/ioapi_share ; \
          $(MAKE) NATIVE_RWORDSIZE="$(NATIVE_RWORDSIZE)" RWORDSIZE="$(RWORDSIZE)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

wrfio_esmf :
	( cd $(WRF_SRC_ROOT_DIR)/external/io_esmf ; \
          make FC="$(FC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS) $(ESMF_MOD_INC)" \
          RANLIB="$(RANLIB)" CPP="$(CPP) $(POUND_DEF) " AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

#	There is probably no reason to modify these rules

.F.i:
	$(RM) $@
	$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.F > $@
	mv $*.i $(DEVTOP)/pick/$*.f90
	cp $*.F $(DEVTOP)/pick

.F.o:
	$(RM) $@
	$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F  > $*.bb
	$(SED_FTN) $*.bb | $(CPP) $(TRADFLAG) > $*.f90
	$(RM) $*.b $*.bb
	@ if echo $(ARCHFLAGS) | $(FGREP) 'DVAR4D'; then \
          echo COMPILING $*.F for 4DVAR ; \
          $(WRF_SRC_ROOT_DIR)/var/build/da_name_space.pl $*.f90 > $*.f90.tmp ; \
          mv $*.f90.tmp $*.f90 ; \
        fi
	$(FC) -o $@ -c $(FCFLAGS) $(OMP) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90
        

.F.f90:
	$(RM) $@
	$(SED_FTN) $*.F > $*.b 
	$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.b  > $@
	$(RM) $*.b

.f90.o:
	$(RM) $@
	$(FC) -o $@ -c $(FCFLAGS) $(PROMOTION) $(FCSUFFIX) $*.f90

setfeenv.o : setfeenv.c
	$(RM) $@
	$(CCOMP) -o $@ -c $(CFLAGS) $(OMPCC) $*.c

.c.o:
	$(RM) $@
	$(CC) -o $@ -c $(CFLAGS) $*.c

# A little more adventurous.  Allow full opt on 
# mediation_integrate.o \
# shift_domain_em.o \
# solve_em.o  <-- gets a little kick from SOLVE_EM_SPECIAL too, if defined
# mediation_feedback_domain.o : mediation_feedback_domain.F
# mediation_force_domain.o : mediation_force_domain.F
# mediation_interp_domain.o : mediation_interp_domain.F

# compile these without high optimization to speed compile
mediation_integrate.o : mediation_integrate.F
track_driver.o : track_driver.F
convert_nmm.o : convert_nmm.F
init_modules_em.o : init_modules_em.F
input_wrf.o : input_wrf.F
module_io.o : module_io.F
module_comm_dm.o : module_comm_dm.F
module_comm_dm_0.o : module_comm_dm_0.F
module_comm_dm_1.o : module_comm_dm_1.F
module_comm_dm_2.o : module_comm_dm_2.F
module_comm_dm_3.o : module_comm_dm_3.F
module_comm_nesting_dm.o : module_comm_nesting_dm.F
module_configure.o : module_configure.F
module_dm.o : module_dm.F
module_domain.o : module_domain.F
module_domain_type.o : module_domain_type.F
module_alloc_space_0.o : module_alloc_space_0.F
module_alloc_space_1.o : module_alloc_space_1.F
module_alloc_space_2.o : module_alloc_space_2.F
module_alloc_space_3.o : module_alloc_space_3.F
module_alloc_space_4.o : module_alloc_space_4.F
module_alloc_space_5.o : module_alloc_space_5.F
module_alloc_space_6.o : module_alloc_space_6.F
module_alloc_space_7.o : module_alloc_space_7.F
module_alloc_space_8.o : module_alloc_space_8.F
module_alloc_space_9.o : module_alloc_space_9.F
module_tiles.o : module_tiles.F
module_fddaobs_rtfdda.o : module_fddaobs_rtfdda.F
module_initialize.o : module_initialize.F
module_physics_init.o : module_physics_init.F 
module_initialize_b_wave.o : module_initialize_b_wave.F
module_initialize_hill2d_x.o : module_initialize_hill2d_x.F
module_initialize_quarter_ss.o : module_initialize_quarter_ss.F
module_initialize_real.o : module_initialize_real.F
module_initialize_real.o: module_initialize_real.F
module_initialize_squall2d_x.o : module_initialize_squall2d_x.F
module_initialize_squall2d_y.o : module_initialize_squall2d_y.F
module_initialize_scm_xy.o : module_initialize_scm_xy.F
module_integrate.o : module_integrate.F
module_io_mm5.o : module_io_mm5.F
module_io_wrf.o : module_io_wrf.F
module_si_io.o : module_si_io.F
module_wps_io_arw.o : module_wps_io_arw.F
module_state_description.o : module_state_description.F 
output_wrf.o : output_wrf.F
solve_interface.o : solve_interface.F
start_domain.o : start_domain.F
start_em.o : start_em.F
wrf_bdyin.o : wrf_bdyin.F
wrf_bdyout.o : wrf_bdyout.F
wrf_ext_read_field.o : wrf_ext_read_field.F
wrf_ext_write_field.o : wrf_ext_write_field.F
wrf_fddaobs_in.o : wrf_fddaobs_in.F
wrf_histin.o : wrf_histin.F
wrf_histout.o : wrf_histout.F
wrf_inputin.o : wrf_inputin.F
wrf_inputout.o : wrf_inputout.F
wrf_restartin.o : wrf_restartin.F
wrf_restartout.o : wrf_restartout.F
wrf_tsin.o : wrf_tsin.F
nl_get_0_routines.o : nl_get_0_routines.F
nl_get_1_routines.o : nl_get_1_routines.F
nl_set_0_routines.o : nl_set_0_routines.F
nl_set_1_routines.o : nl_set_1_routines.F

mediation_integrate.o \
track_driver.o \
convert_nmm.o \
init_modules_em.o \
module_dm.o \
module_fddaobs_rtfdda.o \
module_initialize.o \
module_initialize_b_wave.o \
module_initialize_hill2d_x.o \
module_initialize_quarter_ss.o \
module_initialize_real.o \
module_initialize_squall2d_x.o \
module_initialize_squall2d_y.o \
module_initialize_scm_xy.o \
module_integrate.o \
module_io_mm5.o \
module_io_wrf.o \
module_si_io.o \
module_wps_io_arw.o \
module_tiles.o \
output_wrf.o \
solve_interface.o \
start_domain.o \
start_em.o \
wrf_fddaobs_in.o \
wrf_tsin.o :
	$(RM) $@
	$(SED_FTN) $*.F > $*.b 
	$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b  > $*.f90
	$(RM) $*.b
	@ if echo $(ARCHFLAGS) | $(FGREP) 'DVAR4D'; then \
          echo COMPILING $*.F for 4DVAR ; \
          $(WRF_SRC_ROOT_DIR)/var/build/da_name_space.pl $*.f90 > $*.f90.tmp ; \
          mv $*.f90.tmp $*.f90 ; \
        fi
	if $(FGREP) '!$$OMP' $*.f90 ; then \
          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
	  $(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
        else \
          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
	  $(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
        fi

#solve_em.o :
#	$(RM) $@
#	$(SED_FTN) $*.F > $*.b 
#	$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.b  > $*.f90
#	$(RM) $*.b
#	$(FC) -o $@ -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $(SOLVE_EM_SPECIAL) $(OMP) $*.f90

module_sf_ruclsm.o : module_sf_ruclsm.F

module_sf_ruclsm.o :
	$(RM) $@
	$(SED_FTN) $*.F > $*.b 
	$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b  > $*.f90
	$(RM) $*.b
	if $(FGREP) '!$$OMP' $*.f90 ; then \
          echo COMPILING $*.F WITH OMP ; \
          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
	  $(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
        else \
          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
	  $(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
        fi

# compile without OMP
input_wrf.o \
module_domain.o \
module_domain_type.o \
module_physics_init.o \
module_io.o \
wrf_bdyin.o \
wrf_bdyout.o \
wrf_ext_read_field.o \
wrf_ext_write_field.o \
wrf_histin.o \
wrf_histout.o \
wrf_inputin.o \
wrf_inputout.o \
wrf_restartin.o \
wrf_restartout.o \
module_state_description.o \
module_alloc_space.o \
module_alloc_space_0.o \
module_alloc_space_1.o \
module_alloc_space_2.o \
module_alloc_space_3.o \
module_alloc_space_4.o \
module_alloc_space_5.o \
module_alloc_space_6.o \
module_alloc_space_7.o \
module_alloc_space_8.o \
module_alloc_space_9.o \
module_comm_dm.o \
module_comm_dm_0.o \
module_comm_dm_1.o \
module_comm_dm_2.o \
module_comm_dm_3.o \
module_comm_nesting_dm.o \
module_configure.o :
	$(RM) $@
	$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F  > $*.bb
	$(SED_FTN) $*.bb | $(CPP) $(TRADFLAG) > $*.f90
	@ if echo $(ARCHFLAGS) | $(FGREP) 'DVAR4D'; then \
          echo COMPILING $*.F for 4DVAR ; \
          $(WRF_SRC_ROOT_DIR)/var/build/da_name_space.pl $*.f90 > $*.f90.tmp ; \
          mv $*.f90.tmp $*.f90 ; \
        fi
	$(RM) $*.b $*.bb
	$(FC) -c $(PROMOTION) $(FCSUFFIX) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $*.f90


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