[pyngl-talk] missing shared library for PyNIO

Marcia Branstetter branstetterm at ornl.gov
Wed Feb 8 13:31:22 MST 2017


Hi Kevin,

Here is the output:
[mbranst at or-condo-login02 ~]$ conda list -n pyn_test
# packages in environment at /home/mbranst/miniconda2/envs/pyn_test:
#
bzip2                     1.0.6                         3
ca-certificates           2016.9.26                     0    conda-forge
cairo                     1.14.6                        0    conda-forge
certifi                   2016.2.28                py27_0
curl                      7.52.1                        0
expat                     2.1.0                         0
fontconfig                2.11.1                        6    conda-forge
freetype                  2.6.3                         1    conda-forge
freexl                    1.0.2                         1    conda-forge
g2clib                    1.6.0                         2    conda-forge
gdal                      2.1.3               np111py27_1    conda-forge
geos                      3.5.0                         0
giflib                    5.1.4                         0    conda-forge
gsl                       2.2.1                         0
hdf4                      4.2.11                        0
hdf5                      1.8.17                        1
hdfeos2                   2.19.1                        7    conda-forge
hdfeos5                   5.1.15                        6    conda-forge
icu                       56.1                          4    conda-forge
jasper                    1.900.1                       4    conda-forge
jbig                      2.1                           0
jpeg                      9b                            0
json-c                    0.12                          0    conda-forge
kealib                    1.4.6                         0
libdap4                   3.18.3                        2    conda-forge
libgcc                    5.2.0                         0
libgfortran               3.0.0                         1
libiconv                  1.14                          0
libnetcdf                 4.4.1.1                       2    conda-forge
libpng                    1.6.28                        0    conda-forge
libpq                     9.5.4                         0
libspatialite             4.3.0a                       14    conda-forge
libtiff                   4.0.6                         3
libxml2                   2.9.4                         0
mkl                       2017.0.1                      0
ncl                       6.3.0                         2    conda-forge
ncurses                   5.9                          10
numpy                     1.11.3                   py27_0
openjpeg                  2.1.2                         2    conda-forge
openssl                   1.0.2k                        0
pcre                      8.39                          1
pip                       9.0.1                    py27_1
pixman                    0.34.0                        0
pkg-config                0.28                          1
proj4                     4.9.3                         2    conda-forge
pyngl                     1.5.0_beta20161122     np111py27_1 
conda-forge
pynio                     1.5.0_beta20160623    np111py27_14 
conda-forge
python                    2.7.13                        0
readline                  6.2                           2
setuptools                27.2.0                   py27_0
sqlite                    3.13.0                        0
tk                        8.5.18                        0
udunits2                  2.2.23                        0    conda-forge
util-linux                2.21                          0
wheel                     0.29.0                   py27_0
xerces-c                  3.1.4                         0
xz                        5.2.2                         1
zlib                      1.2.8                         3

Thanks,
Marcia


On Tue, 7 Feb 2017, Kevin Hallock wrote:

> Hi Marcia,
>
> Could you please run “conda list -n pyn_test” and reply with the output?
>
> The conda-forge project has been rebuilding packages the past few days to address issues with libicu like what you’ve experienced.
>
> Thanks,
> Kevin
>
>> On Feb 7, 2017, at 1:23 PM, Marcia Branstetter <branstetterm at ornl.gov> wrote:
>>
>> Hi,
>>
>> I installed PyNIO and PyNGL on a computer:
>> Linux 3.10.0-327.4.4.el7.x86_64 #1 SMP Tue Jan 5 16:07:00 UTC 2016 x86_64
>> x86_64 x86_64 GNU/Linux
>> today, using
>> conda create --name pyn_test --channel conda-forge pynio
>> pyngl
>>
>> but after I activate pyn_test, go into python and then try to import Nio,
>> I get an error message:
>>>>> import Nio
>> Traceback (most recent call last):
>>   File "<stdin>", line 1, in <module>
>>   File
>> "/home/mbranst/miniconda2/envs/pyn_test/lib/python2.7/site-packages/PyNIO/Nio.py",
>> line 83, in <module>
>>     from nio import *
>> ImportError: libicui18n.so.58: cannot open shared object file: No such
>> file or directory
>>>>> import Ngl
>> Segmentation fault (core dumped)
>>
>> If I import Ngl first, and print the version, I get
>>>>> import Ngl
>>>>> print Ngl.__version__
>> 1.5.0_beta20161122
>>
>> A few weeks ago, I installed PyNIO and PyNGL in the same way on another
>> linux machine, and it's been working fine.
>>
>> I tried installing on a linux virtual machine today and got the same
>> errors.
>>
>> Thanks,
>> Marcia Branstetter
>>
>>
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>
>


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