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Hi,
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<div class="">I’m running a long and slightly cumbersome NCL script - with callouts to WRAPITted Fortran subs. It takes about 8 days to complete, as it’s reading a lot of high res gridded files (HARMONIE/V1 reanalysis), regridding them, and producing an aligned-with-CRU
TS forcing dataset 1901-2018. It also sends each file via scp as it’s produced.</div>
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<div class="">However, I’ve now had two instances of it just.. dying. The most recent was this morning (UK time):</div>
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<div class=""><font face="Courier" class="">(0)<span class="Apple-tab-span" style="white-space:pre">
</span>Fri 14 Jun 2019 04:47:42 BST: top of monthly loop with iy=2005 and im=8<br class="">
(0)<span class="Apple-tab-span" style="white-space:pre"> </span>Fri 14 Jun 2019 04:47:42 BST: top of variable loop with var=TMP_P0_L103_GLC0<br class="">
cruhar_v3_2005_08_3hourly_Tairalign.nc 100% 162MB 10.8MB/s 00:15 <br class="">
(0)<span class="Apple-tab-span" style="white-space:pre"> </span>/Volumes/VERIFY2/output_v3/cruhar_v3_2005_08_3hourly_Tairalign.nc successfully uploaded<br class="">
(0)<span class="Apple-tab-span" style="white-space:pre"> </span>Fri 14 Jun 2019 04:48:48 BST: top of variable loop with var=PRES_P0_L1_GLC0<br class="">
cruhar_v3_2005_08_3hourly_Psurfnoalign.nc 100% 162MB 9.5MB/s 00:17 <br class="">
(0)<span class="Apple-tab-span" style="white-space:pre"> </span>/Volumes/VERIFY2/output_v3/cruhar_v3_2005_08_3hourly_Psurfnoalign.nc successfully uploaded<br class="">
(0)<span class="Apple-tab-span" style="white-space:pre"> </span>Fri 14 Jun 2019 04:49:55 BST: top of variable loop with var=WDIR_P0_L103_GLC0<br class="">
(0)<span class="Apple-tab-span" style="white-space:pre"> </span>Fri 14 Jun 2019 04:50:39 BST: top of variable loop with var=WIND_P0_L103_GLC0<br class="">
Killed<br class="">
[imac:~/WORKING/VERIFY] ianharris% <br class="">
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<div class="">Now where does that 'Killed' come from? Is the system killing it? I see nothing in the system logs. I have plenty of RAM (double what I had the first time it Killed), so I can’t see it being that.</div>
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<div class="">Any suggestions would be helpful!</div>
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<div class="">Cheers</div>
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<div class="">Harry</div>
<div class="">PS Yes I’m sure it won’t happen with Python :)</div>
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Ian 'Harry'Harris | NCAS-Climate | Climatic Research Unit |School of Environmental Sciences | 01.02 Hubert Lamb Building | Faculty of Science | University of East Anglia | Norwich Research Park | Norwich |NR4 7TJ<br class="">
Tel: +44 1603 593 818 Fax: +44 1603 591 327<br class="">
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I work 80%FTE, normally Tuesday-Friday</div>
<span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;"><br class="Apple-interchange-newline" style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;">
<span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;"><span><span><span><span><span><img apple-inline="yes" id="B85BDFB5-3A4E-48FB-A5C2-E8A6222A4078" src="cid:image001.png@01D33EAD.B14304A0" class=""></span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;"><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;"><span><span><span><br style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">Gold
(</span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">Teaching
Excellence</span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">Framework
2017-2020)</span><br style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">UK
Top 15</span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">(The
Times/Sunday</span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">Times
2019 and Complete</span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">University
Guide 2019)</span><br style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">World
Top 200</span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">(Times
Higher</span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">Education
World University</span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">Rankings
2019)</span></span></span></span></span></span>
<div class=""><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;"><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;"><span><span><span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><br style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class="">
<span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;"><span><span><span><span><span><span><img apple-inline="yes" id="B5A63BAE-C4BE-4996-9403-E2A2C10DEB76" src="cid:image002.jpg@01D33EAD.B14304A0" class=""></span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;"><span><span><span><span><span><span><img apple-inline="yes" id="64B3CA01-C590-4F33-93BF-5208457A2A4F" src="cid:image003.png@01D33EAD.B14304A0" class=""></span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;"><span><span><span><span><span><span><img apple-inline="yes" id="AE516C1D-607F-40A3-A052-CFADF5F987E9" src="cid:image004.png@01D33EAD.B14304A0" class=""></span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;"><span><span><span><span><span><span><img apple-inline="yes" id="A5EDCEC6-D54E-4FA7-B2DF-3FDA6EC3C1FC" src="cid:image005.png@01D33EAD.B14304A0" class=""></span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;"><span><span><span><span><span><span><img apple-inline="yes" id="AF520C51-4842-4EDB-A2BE-81A6A3470DE9" src="cid:image006.png@01D33EAD.B14304A0" class=""></span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;"><span><span><span><span><span><span><img apple-inline="yes" id="FEEA8D5C-8D0A-41C0-AE19-33371B3FC0CF" src="cid:image007.png@01D33EAD.B14304A0" class=""></span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;"><span><span><span><span><span><span><img apple-inline="yes" id="55C420A2-1DDD-4455-B91C-AC6CBAFA5960" src="cid:image008.png@01D33EAD.B14304A0" class=""></span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class=""> </span><span style="color: rgb(0, 0, 0); font-family: Georgia; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;"><span><span><span><span><span><span><img apple-inline="yes" id="7409C5D0-9F76-41AC-9CEE-D301E72D2086" src="cid:image009.png@01D33EAD.B14304A0" class=""></span>
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