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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">Hi all<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">I recently (like, yesterday) upgraded to v 6.6.2. The install works fine, except that when I access any netcdf4 files (either using addfile() or ncl_filedump) I get an enormous list of HDF5 error
messages (see below). I do not get the same errors using ncdump. I have version 1.10.5 of hdf5 (which I think is up to date)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">The functionality and scripts work just fine, and I can get over this using 2>/dev/null, but I wonder if anyone else has had this problem or is aware of flag to turn off the the stream of messages.
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">I’m happy to send a file across, but this seemas to be happening with a lot of my netCDF files<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">Will<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">(sample of output from a single file below – the full message is just enormous..)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">NC4_open: path ACCESS1-0_historical_r1i1p1_WOD_profiles_watermass_1956-2005.nc mode 4096 params 0</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">HDF5 error messages turned on.</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">nc4_open_file: path ACCESS1-0_historical_r1i1p1_WOD_profiles_watermass_1956-2005.nc mode 4096</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">nc4_grp_list_add: name /</span><span class="apple-converted-space"> </span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">nc4_rec_read_metadata: grp->hdr.name /</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">found dataset pdum</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">found dataset mass</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">found dataset bounds</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">found dataset depth</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">found dataset dz</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">found dataset lat</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">found dataset lon</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">found dataset time</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">found dataset WODid</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">found dataset Sprof</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">found dataset Tprof</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">found dataset S</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">found dataset T</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">found dataset Z</span><o:p></o:p></p>
<p class="p1"><span class="s1">ERROR: Invalid _NCProperties attribute</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">*** NetCDF-4 Internal Metadata: int_ncid 0x10000 ext_ncid 0x10000</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">FILE - path: ACCESS1-0_historical_r1i1p1_WOD_profiles_watermass_1956-2005.nc cmode: 0x1008 parallel: 0 redef: 0 fill_mode: 0 no_write: 1 next_nc_grpid: 1</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">GROUP - / nc_grpid: 0 nvars: 14 natts: 0</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">DIMENSION - dimid: 0 name: pdum len: 29985 unlimited: 0</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">DIMENSION - dimid: 1 name: mass len: 4 unlimited: 0</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">DIMENSION - dimid: 2 name: bounds len: 2 unlimited: 0</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">DIMENSION - dimid: 3 name: depth len: 96 unlimited: 0</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">VARIABLE - varid: 0 name: pdum ndims: 1 dimscale: 1 dimids: 0</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">VARIABLE - varid: 1 name: mass ndims: 1 dimscale: 1 dimids: 1</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">VARIABLE - varid: 2 name: bounds ndims: 1 dimscale: 1 dimids: 2</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">VARIABLE - varid: 3 name: depth ndims: 1 dimscale: 1 dimids: 3</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">VARIABLE - varid: 4 name: dz ndims: 1 dimscale: 0 dimids: 3</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">VARIABLE - varid: 5 name: lat ndims: 1 dimscale: 0 dimids: 0</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">VARIABLE - varid: 6 name: lon ndims: 1 dimscale: 0 dimids: 0</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">VARIABLE - varid: 7 name: time ndims: 1 dimscale: 0 dimids: 0</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">VARIABLE - varid: 8 name: WODid ndims: 1 dimscale: 0 dimids: 0</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">VARIABLE - varid: 9 name: Sprof ndims: 2 dimscale: 0 dimids: 0 3</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">VARIABLE - varid: 10 name: Tprof ndims: 2 dimscale: 0 dimids: 0 3</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">VARIABLE - varid: 11 name: S ndims: 2 dimscale: 0 dimids: 0 1</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">VARIABLE - varid: 12 name: T ndims: 2 dimscale: 0 dimids: 0 1</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">VARIABLE - varid: 13 name: Z ndims: 3 dimscale: 0 dimids: 0 1 2</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">NC4_inq: ncid 0x10000</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">nc4_att_list_add: name end_year</span><span class="apple-converted-space"> </span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">nc4_att_list_add: name start_year</span><span class="apple-converted-space"> </span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">nc4_att_list_add: name member</span><span class="apple-converted-space"> </span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">nc4_att_list_add: name experiment</span><span class="apple-converted-space"> </span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">nc4_att_list_add: name model</span><span class="apple-converted-space"> </span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">nc4_att_list_add: name creation_script</span><span class="apple-converted-space"> </span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">nc4_att_list_add: name creation_data</span><span class="apple-converted-space"> </span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">nc4_att_list_add: name description</span><span class="apple-converted-space"> </span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">nc_inq_attname: ncid 0x10000 varid -1 attnum 0</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">nc_inq_attname: ncid 0x10000 varid -1 attnum 0</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">NC4_inq_att: ncid 0x10000 varid -1 name end_year</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">nc4_get_att: ncid 0x10000 varid -1 name end_year attnum -1 mem_type 0</span><o:p></o:p></p>
<p class="p1"><span class="apple-tab-span"> </span><span class="s1">NC4_inq_att: ncid 0x10000 varid -1 name end_year</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><o:p> </o:p></span></p>
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