<div dir="ltr">yes sir/ma'am, I did look at the file summary. and that's what I want know why it's giving two different variable names. <div><br></div><div><div><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div>whats the difference between .hdf and .he2. if we can get the variable name from .hdf then why are we using .he2? what is the use of .he2 over .hdf?<br></div><div><br></div><div>could you please provide some information on that. </div><div><font size="2"><span><br></span></font></div><div><font size="2"><span>regards</span></font></div><div><font size="2"><span>Kunal Bali<br></span></font></div><div><br></div><div><b><br></b></div><div><br></div><div><p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;border-collapse:collapse;font-family:Tahoma,Verdana;font-size:12px"><font color="#1F497D"><br></font></p></div></div></div></div></div></div></div></div></div></div></div><br></div></div><br><div class="gmail_quote"><div dir="ltr">On Wed, Aug 15, 2018 at 2:28 AM Dennis Shea <<a href="mailto:shea@ucar.edu">shea@ucar.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div><div>Did you look at the script?<br><br>I added the following specifically to help you. Using .hdf and .he2 yields slightly different variable names. The .he2 appends _mod04 to each variable name.<br><br><br> <b>;</b>vName= "Deep_Blue_Aerosol_Optical_Depth_550_Land_mod04" ; <b>".hdf.he2" </b><br> vName= "Deep_Blue_Aerosol_Optical_Depth_550_Land" ; "<b>.hdf</b>"<br>....<br> pthi = diri + fili <br><b>;;</b>pthi = pthi + ".he2" ; use .he2 extension <br><br></div>Please do a <br><br></div><b>%> ncl_filedump</b> MOD04_L2.A2017060.0510.006.2017060225118<b>.hdf </b>| less<br><br></div><div>The <b>.hdf </b>variable name is: Deep_Blue_Aerosol_Optical_Depth_550_Land<br></div><div><br></div>and<br><b><br>%> ncl_filedump</b> MOD04_L2.A2017060.0510.006.2017060225118<b>.hdf.<span style="color:rgb(0,0,255)">he2</span></b><span style="color:rgb(0,0,255)"> </span>| less<div><div><div><br>The <b>.hdf.he2</b> variable name is: Deep_Blue_Aerosol_Optical_Depth_550_Land_mod04<br><br>====<br></div><div><div><br></div></div></div></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Aug 14, 2018 at 12:07 AM, Kunal Bali <span dir="ltr"><<a href="mailto:kunal.bali9@gmail.com" target="_blank">kunal.bali9@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>First of all thanks a lot, Sir. You have been spending so much time on my work. I appreciate your time. </div><div><br></div><div>........</div><div><br></div><div>I have one query regarding this script. </div><div>Here you use the variable name </div><div>vName= "Deep_Blue_Aerosol_Optical_Depth_550_Land" </div><div><br></div><div>not</div><div><br></div><div>vName= "Deep_Blue_Aerosol_Optical_Depth_550_Land_<b><font color="#0000ff">mod04</font></b>" </div><div><br></div><div>why is it so?</div><div><br></div><div>Also, the output is coming with the values -9999</div><div><br></div><div><p style="margin:0px;font-stretch:normal;font-size:16px;line-height:normal;font-family:Menlo"><span style="font-variant-ligatures:no-common-ligatures"><font color="#000000">AOT at 0.55 micron for land with all quality data (Quality flag=1,2,3) (None) : </font><font color="#ff0000">min=-9999 max=-9999</font></span></p><p style="margin:0px;font-stretch:normal;font-size:16px;line-height:normal;font-family:Menlo"><span style="font-variant-ligatures:no-common-ligatures"><font color="#ff0000"><br></font></span></p><p style="margin:0px;font-stretch:normal;font-size:16px;line-height:normal;font-family:Menlo"><br></p><p style="margin:0px;font-stretch:normal;font-size:16px;line-height:normal;font-family:Menlo"><br></p><div><div dir="ltr" class="m_3164661000834088492m_-4923739276305907262gmail_signature"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div>---<br></div><div><font size="2"><span>Kunal Bali<br></span></font></div><div><br></div><div><b><br></b></div><div><br></div><div><p style="margin:0px;border-collapse:collapse;font-family:Tahoma,Verdana;font-size:12px"><font color="#1F497D"><br></font></p></div></div></div></div></div></div></div></div></div></div></div><br></div></div><div class="m_3164661000834088492HOEnZb"><div class="m_3164661000834088492h5"><br><div class="gmail_quote"><div dir="ltr">On Tue, Aug 14, 2018 at 5:42 AM Dennis Shea <<a href="mailto:shea@ucar.edu" target="_blank">shea@ucar.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>You must do more debugging on your own. It takes time to look at your issues.<br><br>===<br></div>re: "<span style="color:rgb(255,0,0)">But the files have the given variable then what would be the reason for this warning?"</span><br><br>NCL is telling you the issue:<br>Warning:File ./MOD04_L2.A2017087.0450.006.2017087134018.hdf <span style="color:rgb(0,0,255)"><b>dimension sizes do not conform to others in list;</b></span> skipping file<div><br></div><div>What should you do? <br><br>Well, of course, look at the <span style="color:rgb(0,0,255)"><b>dimension sizes</b></span><span style="color:rgb(0,0,255)"><b> </b><span style="color:rgb(0,0,0)">on each file.<br></span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)">ncl-talk always tells people to "look at the data" ... assume nothing."<br><br></span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)">Please see: the attachments:<br><br></span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)"><b>%> ncl</b> MOD04_dimsizes.ncl >&! out.</span></span><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)">MOD04_dimsizes</span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)"><br></span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)">Some files have soil_moisture with dimension sizes: (/<span style="color:rgb(255,0,0)"><b>203</b></span>,135/) while others are (/<span style="color:rgb(255,0,0)"><b>204</b></span>,135/)<br><br></span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)"><b><a href="https://www.ncl.ucar.edu/Document/Functions/Built-in/addfiles.shtml" target="_blank">addfiles</a></b> expects <b>consistent </b>dimension sizes. <b>addfiles</b> ["<b>join</b>"] across 60 files would expect <b>all</b><br><br></span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)"> <b>all</b> (60, 203, 135) <br>or <br></span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)"> <b>all</b> (60, 204, 135)<br></span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)"><br></span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)">It can <b>not</b> do<br><br></span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)"> (60, <b>203 or 204</b>, 135)<br></span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)"><br><br>=======================<br></span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)">I am attaching a script that makes netCDF files. One netCDF per input HDF file.<br><br></span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)">%> ncl MOD04_to_netCDF.ncl<br><br><br></span></span></div><div><span style="color:rgb(0,0,255)"><span style="color:rgb(0,0,0)"><br></span></span></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Aug 13, 2018 at 1:56 AM, Kunal Bali <span dir="ltr"><<a href="mailto:kunal.bali9@gmail.com" target="_blank">kunal.bali9@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><img class="m_3164661000834088492m_-4923739276305907262m_-6410949493303510864m_-2909320735719678730mailtrack-img" alt="" style="display:flex" src="https://mailtrack.io/trace/mail/c29002b332cea6ee40fc485d1d03198b084915bf.png?u=2827700" width="0" height="0"><div>Sir,</div><div><br></div><div>sorry for sending this offline message.</div><div><br></div><div><br></div><div>After running your script for the attached file list. I still gets the same warning <br></div><div><br></div><div>warning:File ./MOD04_L2.A2017087.0450.006.2017087134018.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017082.0435.006.2017082135321.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017078.0500.006.2017081195531.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017074.0520.006.2017074182316.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017069.0505.006.2017069135117.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017060.0510.006.2017060225118.hdf dimension sizes do not conform to others in list; skipping file<span><br>warning:<b>A</b><b> valid instance of variable Deep_Blue_Aerosol_Optical_Depth_550_Land_mod04 was not found in one or more elements of the file list</b></span></div><div><br></div><div><span style="color:rgb(255,0,0)">But the files have the given variable then what would be the reason for this warning?</span><br></div><div><br></div><div>and also, when I run the same script for the given skipping file (separately in the new directory) then it it gives warning with one skipping file.</div><div><br></div><div>warning:File ./MOD04_L2.A2017073.0440.006.2017073134018.hdf dimension sizes do not conform to others in list; skipping file<span><br>warning:A valid instance of variable Deep_Blue_Aerosol_Optical_Depth_550_Land_mod04 was not found in one or more elements of the file list<br><br></span></div><div><br></div><div>Could you please provide some thoughts on that as well. <br></div><div><br></div><div><br></div><div>and sorry for sending this offline mail.</div><span><div><br></div><div><br></div><br clear="all"><div><div dir="ltr" class="m_3164661000834088492m_-4923739276305907262m_-6410949493303510864m_-2909320735719678730gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div>---<br></div><div><font size="2"><span>Kunal Bali<br></span></font></div><br><div><b><br></b></div><div><br></div><div><p style="margin:0px;border-collapse:collapse;font-family:Tahoma,Verdana;font-size:12px"><font color="#1F497D"><br></font></p></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div><br><div class="m_3164661000834088492m_-4923739276305907262m_-6410949493303510864m_-2909320735719678730mt-signature">
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</div></span></div><div class="m_3164661000834088492m_-4923739276305907262m_-6410949493303510864HOEnZb"><div class="m_3164661000834088492m_-4923739276305907262m_-6410949493303510864h5"><br><div class="gmail_quote"><div dir="ltr">On Thu, Aug 9, 2018 at 10:14 AM Kunal Bali <<a href="mailto:kunal.bali9@gmail.com" target="_blank">kunal.bali9@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Dear Sir,<div>Thanks for the explanation and spending some time on this query. Thank You so much. </div><div><br><div><br></div><div><div><br clear="all"><div><div dir="ltr" class="m_3164661000834088492m_-4923739276305907262m_-6410949493303510864m_-2909320735719678730m_6188658281634239704gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div>---<br></div><div><font size="2"><span>Kunal Bali<br></span></font></div><div><br></div><div><b><br></b></div><div><br></div><div><p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;border-collapse:collapse;font-family:Tahoma,Verdana;font-size:12px"><font color="#1F497D"><br></font></p></div></div></div></div></div></div></div></div></div></div></div><br></div></div></div></div><br><div class="gmail_quote"><div dir="ltr">On Thu, Aug 9, 2018 at 6:00 AM Dennis Shea <<a href="mailto:shea@ucar.edu" target="_blank">shea@ucar.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div><div><div><div><div><b>This is offline from ncl-talk</b><br><br></div>I had a few MOD04_L2 files so I created a basic script with many print statements.<br></div>It shows multiple ways to define 'time.'<br><br></div>Please run on your MOD04_L2.</div>Look carefully at the output. In particular, the various 'time' variables.<br></div><div>I suppose you use 'time_file' used rather that 'time_scan'<br></div><div><br></div>This is <b>swath</b> data so while the latitude/longitude <b>dimension sizes </b>on each file are the same, it is not likely that the actual latitude and longitude values are the same. Hence, there is a 'time' associated with the lat/lon arrays.<br><br>============<br><br></div>Good Luck<br><div><br><br><br><div><br></div></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Aug 8, 2018 at 9:20 AM, Dennis Shea <span dir="ltr"><<a href="mailto:shea@ucar.edu" target="_blank">shea@ucar.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div><div>Your 'summary.txt' contains:<br><br> double<b> Scan_Start_Time</b> ( Cell_Along_Swath_mod04, Cell_Across_Swath_mod04 )<br> valid_range : ( 0, 3155800000 )<br> _FillValue : -999<br> long_name : TAI Time at Start of Scan replicated across the swath<br> units : Seconds since 1993-1-1 00:00:00.0 0<br> scale_factor : 1<br> add_offset : 0<br> Parameter_Type : MODIS Input<span><br> Cell_Along_Swath_Sampling : ( 1, 2021, 10 )<br></span> Cell_Across_Swath_Sampling : ( 1, 1345, 10 )<br> Geolocation_Pointer : Internal geolocation arrays<br> hdf_name : Scan_Start_Time<br><br></div>This 'time' and it is <b>two-dimensional</b>.<br><br>-----<br><br></div>The 'time' you are trying to create is <b>one-dimensional </b>and is based strictly on a file name.<br><br>----<br></div>Also, the following may be if interest<br><div><br><a href="https://www.ncl.ucar.edu/Applications/HDF.shtml" target="_blank">https://www.ncl.ucar.edu/Applications/HDF.shtml</a><br><a href="https://www.ncl.ucar.edu/Applications/Scripts/hdf4sds_5.ncl" target="_blank">hdf4sds_5.ncl</a><br><br>---<br>These files are HDF-EOS format: <b>HDFEOSVersion : HDFEOS_V2.19<br><br></b></div><div>For fun, append a <b>.he2</b> file extension:<br><br></div><div>%><b> ncl_filedump </b>MOD04_L2.A2017202.0705.061.2017316182248.hdf<b>.he2</b> | less<br><br></div><div>It makes the file look like a netCDF file dump.<br></div><div><br></div></div><div class="gmail_extra"><br><div class="gmail_quote"><div><div class="m_3164661000834088492m_-4923739276305907262m_-6410949493303510864m_-2909320735719678730m_6188658281634239704m_-7828619691304698263h5">On Wed, Aug 8, 2018 at 3:50 AM, Kunal Bali <span dir="ltr"><<a href="mailto:kunal.bali9@gmail.com" target="_blank">kunal.bali9@gmail.com</a>></span> wrote:<br></div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="m_3164661000834088492m_-4923739276305907262m_-6410949493303510864m_-2909320735719678730m_6188658281634239704m_-7828619691304698263h5"><div dir="ltr"><img class="m_3164661000834088492m_-4923739276305907262m_-6410949493303510864m_-2909320735719678730m_6188658281634239704m_-7828619691304698263m_2444196778803657773m_-5175775043905591717mailtrack-img" alt="" style="display:flex" src="https://mailtrack.io/trace/mail/d7ea6ad0d2f7b7745108b1789399197715cc945e.png?u=2827700" width="0" height="0"><div></div><div>Dear NCL user,</div><div><br></div><div>I am converting hdf to netcdf using attached ncl script (extracting aerosol product). But it's showing some errors and values are also coming from +01. to -0.1. <br></div><div><div><div dir="ltr" class="m_3164661000834088492m_-4923739276305907262m_-6410949493303510864m_-2909320735719678730m_6188658281634239704m_-7828619691304698263m_2444196778803657773m_-5175775043905591717gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div>Summary of the file is also attached herewith. <br></div><div><br></div><div><br></div><div>the errors/warning are:</div><div><br></div><div>warning:File ./MOD04_L2.A2017209.0710.061.2017317003637.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017209.0525.061.2017317002757.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017205.0550.061.2017316194801.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017200.0355.061.2017316192232.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017196.0600.061.2017316164649.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017195.0340.061.2017316165535.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017192.0625.061.2017316024320.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017191.0405.061.2017316013818.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017188.0645.061.2017316002323.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017187.0610.061.2017315234444.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017187.0425.061.2017315234452.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017184.0710.061.2017315214958.hdf dimension sizes do not conform to others in list; skipping file<br>warning:File ./MOD04_L2.A2017183.0450.061.2017315215216.hdf dimension sizes do not conform to others in list; skipping file<br>warning:A valid instance of variable Deep_Blue_Aerosol_Optical_Depth_550_Land_mod04 was not found in one or more elements of the file list<br>fatal:Coordinate variables must be the same dimension as their dimension<br>fatal:No coordinate variable exists for dimension (time) in variable (var)<br>fatal:["Execute.c":8640]:Execute: Error occurred at or near line 35 in file script_01.ncl<br><br>fatal:["Execute.c":8640]:Execute: Error occurred at or near line 69 in file script_01.ncl<br><br><br>Variable: od55_1km<br>Type: short<br>Total Size: 6303150 bytes<br> 3151575 values<br>Number of Dimensions: 3<br>Dimensions and sizes: [time | 115] x [Cell_Along_Swath_mod04 | 203] x [Cell_Across_Swath_mod04 | 135]<br>Coordinates: <br>Number Of Attributes: 12<br> coordinates : Latitude_mod04, Longitude_mod04<br> hdfeos_name : Deep_Blue_Aerosol_Optical_Depth_550_Land<br> _FillValue : -9999<br> Geolocation_Pointer : Internal geolocation arrays<br> Cell_Across_Swath_Sampling : ( 1, 1354, 10 )<br> Cell_Along_Swath_Sampling : ( 1, 2021, 10 )<br> Parameter_Type : Output<br> add_offset : 0<br> scale_factor : 0.001000000047497451<br> units : None<br> long_name : AOT at 0.55 micron for land with all quality data (Quality flag=1,2,3)<br> valid_range : ( 0, 5000 )<br>fatal:Dimension sizes of left hand side do not match right hand side<br>fatal:["Execute.c":8640]:Execute: Error occurred at or near line 110 in file script_01.ncl<br></div><div><br></div><div><br></div><div><br></div><div>could you please provide some information on this.</div><div><br></div><div>Thank You<br></div><div><br></div><div><br></div><div>---<br></div><div><font size="2"><span>Kunal Bali<br></span></font></div><br><div><b><br></b></div><div><br></div><div><p style="margin:0px;border-collapse:collapse;font-family:Tahoma,Verdana;font-size:12px"><font color="#1F497D"><br></font></p></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div><div class="m_3164661000834088492m_-4923739276305907262m_-6410949493303510864m_-2909320735719678730m_6188658281634239704m_-7828619691304698263m_2444196778803657773m_-5175775043905591717mt-signature">
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