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<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Hi Rick,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><br>
Thanks for the answer, I thought also about the differences between missing values and fill values. I tested your suggestion, and the result was the same. Since I am dealing with doubles, I standardized both (missing values and fill values) to -9999. Quick
and dirty, but in order to make sure both attributes are the same, I performed:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">cveg_HWSD_b_avg_3d@_FillValue = -9999
<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">cveg_HWSD_b_avg_3d@missing_value = -9999
<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">lpjml_hadgem2_es_avg_mask_3d@_FillValue = -9999
<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">lpjml_hadgem2_es_avg_mask_3d@missing_value = -9999
<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">cveg_HWSD_b_avg_3d@_FillValue = cveg_HWSD_b_avg_3d@missing_value<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">lpjml_hadgem2_es_avg_mask_3d@_FillValue = lpjml_hadgem2_es_avg_mask_3d@missing_value<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">delete(cveg_HWSD_b_avg_3d@missing_value) ; not necessary, just cleaning up<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">delete(lpjml_hadgem2_es_avg_mask_3d@missing_value) ; not necessary, just cleaning up<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">This resulted in:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">Variable: cveg_HWSD_b_avg_3d<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">Type: double<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">Total Size: 106560 bytes<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> 13320 values<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">Number of Dimensions: 3<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">Dimensions and sizes: [time | 1] x [lat | 37] x [lon | 360]<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">Coordinates:<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> time: [1..1]<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> lat: [79.5..43.5]<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> lon: [-179.5..179.5]<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">Number Of Attributes: 5<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> average_op_ncl : dim_avg_n over dimension(s): time<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> units : g C m-2<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> long_name : C stored in Cveg<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> percentile : 50<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> _FillValue : -9999<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">(0) C stored in Cveg: min=0.1382737806910972 max=12.84650588106167<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">Variable: lpjml_hadgem2_es_avg_mask_3d<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">Type: double<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">Total Size: 106560 bytes<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> 13320 values<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">Number of Dimensions: 3<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">Dimensions and sizes: [time | 1] x [lat | 37] x [lon | 360]<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">Coordinates:<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> time: [1..1]<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> lat: [79.5..43.5]<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> lon: [-179.5..179.5]<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">Number Of Attributes: 5<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> units : kg m-2<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> long_name : Carbon Mass in Vegetation<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> standard_name : vegetation_carbon_content<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> average_op_ncl : dim_avg_n over dimension(s): time<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"> _FillValue : -9999<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US">(0) Carbon Mass in Vegetation: min=3.493304393487051e-05 max=15.10204410552979<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">And then the escorc_n function [lpjml_r = escorc_n(cveg_HWSD_b_avg_3d,lpjml_hadgem2_es_avg_mask_3d, 0, 0)], which again has resulted in min=-9999 max=-9999. The issue is clearly in the escorc_n
function.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Best,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Efren<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal"><b><span style="font-size:12.0pt;color:black">From: </span></b><span style="font-size:12.0pt;color:black">Rick Brownrigg <brownrig@ucar.edu><br>
<b>Date: </b>Saturday, 13 January 2018 at 16.49<br>
<b>To: </b>Efren Lopez Blanco <elb@bios.au.dk><br>
<b>Cc: </b>"ncl-talk@ucar.edu" <ncl-talk@ucar.edu><br>
<b>Subject: </b>Re: [ncl-talk] Computing coefficient of determination with gridded datasets<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<div>
<p class="MsoNormal" style="margin-bottom:12.0pt">Pure speculation on my part, but I notice that both variables have different values for their missing_value vs. _FillValue attributes. I wonder which value actually occurs in the data? I *think* if both are
present as attributes, NCL will honor the _FillValue value, and then values of missing_value get treated as data (?) Something to perhaps check out.<o:p></o:p></p>
</div>
<p class="MsoNormal">Rick<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<p class="MsoNormal">On Sat, Jan 13, 2018 at 3:21 AM, Efren Lopez Blanco via ncl-talk <<a href="mailto:ncl-talk@ucar.edu" target="_blank">ncl-talk@ucar.edu</a>> wrote:<o:p></o:p></p>
<blockquote style="border:none;border-left:solid #CCCCCC 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-right:0in">
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<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Hi there,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I would like to compute the coefficient of determination (r squared) between 2 gridded datasets of the form (time,lat,lon). In order to do so, I aim to apply the escorc_n function.
The two datasets I am using look like:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Variable: <b>cveg_HWSD_b_avg_3d</b><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Type: double<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Total Size: 106560 bytes<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
13320 values<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Number of Dimensions: 3<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Dimensions and sizes: [time | 1] x [lat | 37] x [lon | 360]<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Coordinates:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
time: [1..1]<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
lat: [79.5..43.5]<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
lon: [-179.5..179.5]<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Number Of Attributes: 6<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
average_op_ncl : dim_avg_n over dimension(s): time<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
missing_value : -9999<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
units : g C m-2<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
long_name : C stored in Cveg<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
percentile : 50<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
_FillValue : 1.000000020040877e+20<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
(0) C stored in Cveg: min=0.1382737806910972 max=12.84650588106167<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Variable: <b>lpjml_hadgem2_es_avg_mask_3d</b><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Type: double<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Total Size: 106560 bytes<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
13320 values<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Number of Dimensions: 3<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Dimensions and sizes: [time | 1] x [lat | 37] x [lon | 360]<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Coordinates:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
time: [1..1]<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
lat: [79.5..43.5]<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
lon: [-179.5..179.5]<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Number Of Attributes: 6<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
units : kg m-2<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
long_name : Carbon Mass in Vegetation<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
standard_name : vegetation_carbon_content<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
average_op_ncl : dim_avg_n over dimension(s): time<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
missing_value : 1e+20<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
_FillValue : 1.000000020040877e+20<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
(0) Carbon Mass in Vegetation: min=3.493304393487051e-05 max=15.10204410552979<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Then I apply the function:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-indent:.5in">
lpjml_r = escorc_n(cveg_HWSD_b_avg_3d,lpjml_hadgem2_es_avg_mask_3d, 0, 0) ; r(nlat,mlon)<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">However, I’ve noticed the output only contain NAs:
<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Variable: <b>lpjml_r</b><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Type: double<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Total Size: 106560 bytes<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
13320 values<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Number of Dimensions: 2<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Dimensions and sizes: [lat | 37] x [lon | 360]<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Coordinates:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
lat: [79.5..43.5]<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
lon: [-179.5..179.5]<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
Number Of Attributes: 6<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
missing_value : -9999<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
average_op_ncl : dim_avg_n over dimension(s): time<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
units : g C m-2<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
long_name : C stored in Cveg<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
percentile : 50<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
_FillValue : 1.000000020040877e+20<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in">
(0) C stored in Cveg: min=1.000000020040877e+20 max=1.000000020040877e+20<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Am I doing something wrong? I’ve also tried to convert from double to float.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Best,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Efren<o:p></o:p></p>
</div>
</div>
<p class="MsoNormal" style="margin-bottom:12.0pt"><br>
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</blockquote>
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<p class="MsoNormal"><o:p> </o:p></p>
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