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<p class="MsoNormal"><span style="font-family:Calibri">Thank you Mary,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:Calibri"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:Calibri">An easy way to tell if it’s a Geo2D is, to open the file with panoply and plot a variable with Geo2D, you will see the global grid as well. Otherwise, just a rectangle region.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:Calibri"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-family:Calibri;color:black">From: </span>
</b><span style="font-family:Calibri;color:black">Mary Haley <haley@ucar.edu><br>
<b>Date: </b>Thursday, May 4, 2017 at 7:05 PM<br>
<b>To: </b>"Su, Jian (GSFC-610.2)[ADNET SYSTEMS INC]" <jian.su@nasa.gov><br>
<b>Cc: </b>Rick Brownrigg <brownrig@ucar.edu>, "ncl-talk@ucar.edu" <ncl-talk@ucar.edu><br>
<b>Subject: </b>Re: [ncl-talk] change dimensions to lat/lon<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Jian,<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">The first issue is that you cannot assign a missing value using a different type. For example, the following will produce the same error, because "x" is an integer array, and you are trying to assign a floating point _FillValue:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<pre><span style="font-size:12.0pt"> x = (/1,2,3,4,5,-999/) ; x is an array of integers<o:p></o:p></span></pre>
<pre><span style="font-size:12.0pt"> x@_FillValue = -999. ; -999. is a float, which is a "higher" type than an integer<o:p></o:p></span></pre>
<p class="MsoNormal"><br>
The fix in your case would be to use "totype":<br>
<br>
<span style="font-family:"monospace","serif""> x@_FillValue = totype(x@CodeMissingValue,typeof(x))</span><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-family:Arial">You have to be careful with this kind of assignment, however, because you could lose precision when going from a higher type to a lower type.</span><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-family:Arial">As for the second question, I'm not sure what you mean by "Geo2D". </span><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-family:Arial">--Mary</span><o:p></o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Tue, May 2, 2017 at 8:44 AM, Su, Jian (GSFC-610.2)[ADNET SYSTEMS INC] <<a href="mailto:jian.su@nasa.gov" target="_blank">jian.su@nasa.gov</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri">Thank you again Rick, and thank you Dennis.</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri">There are still two issues:</span><o:p></o:p></p>
<p class="m-5995897457394344850msolistparagraph"><span style="font-family:Calibri">1.</span><span style="font-size:7.0pt">
</span><span style="font-family:Calibri">x@_FillValue = x@CodeMissingValue</span><o:p></o:p></p>
<p class="m-5995897457394344850msolistparagraph"><span style="font-family:Calibri">fatal:Type Mismatch: The type of missing value could not be converted to type of variable (x)</span><o:p></o:p></p>
<p class="m-5995897457394344850msolistparagraph"><span style="font-family:Calibri"> </span><o:p></o:p></p>
<p class="m-5995897457394344850msolistparagraph"><span style="font-family:Calibri">2.</span><span style="font-size:7.0pt">
</span><span style="font-family:Calibri">It’s 2D but not Geo2D if you open it with eg, panoply.</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> </span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-family:Calibri;color:black">From:
</span></b><span style="font-family:Calibri;color:black">Rick Brownrigg <<a href="mailto:brownrig@ucar.edu" target="_blank">brownrig@ucar.edu</a>><br>
<b>Date: </b>Tuesday, May 2, 2017 at 10:23 AM</span><o:p></o:p></p>
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<p class="MsoNormal"><br>
<b>To: </b>"Su, Jian (GSFC-610.2)[ADNET SYSTEMS INC]" <<a href="mailto:jian.su@nasa.gov" target="_blank">jian.su@nasa.gov</a>><br>
<b>Cc: </b>"<a href="mailto:ncl-talk@ucar.edu" target="_blank">ncl-talk@ucar.edu</a>" <<a href="mailto:ncl-talk@ucar.edu" target="_blank">ncl-talk@ucar.edu</a>><br>
<b>Subject: </b>Re: [ncl-talk] change dimensions to lat/lon<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Hi Jian,
<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">This is from my colleague Dennis Shea; it presumes you need to generate the actual lat/lon values:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:9.5pt">Re: the hdf5 question ... a (720,1440) is a 'classic' 0.25 degree grid. This is offset from the poles an dateline by 0.125. The grisd point is the
cented of the local grid.</span><o:p></o:p></p>
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<pre style="white-space:pre-wrap">nlat = 720<o:p></o:p></pre>
<pre>lat = <b>latGlobeFo</b>(nlat, "lat", "latitude", "degrees_north")<br>lat = lat(::-1) ; lat: [89.875..-89.875]<o:p></o:p></pre>
<pre style="white-space:pre-wrap">print(lat)<o:p></o:p></pre>
<pre style="white-space:pre-wrap">mlon = 1440<br>lon = <b>lonGlobeFo</b>(mlon, "lon", "longitude", "degrees_east")<br>lon = (/ lon - 180. /) ; subtract 180 from all values <o:p></o:p></pre>
<pre>lon&lon = lon ; update coordinate<o:p></o:p></pre>
<pre style="margin-bottom:12.0pt"><a href="http://www.ncl.ucar.edu/Document/Functions/Built-in/print.shtml" target="_blank"><b>print</b></a>(lon) ; lon: [-179.875..179.875]<o:p></o:p></pre>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:9.5pt"> </span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:9.5pt"> x = f->pixTot</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:9.5pt"> x!0 = "lat"</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:9.5pt"> x!1 = "lon"</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:9.5pt"> x@_FillValue = x@CodeMissingValue</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:9.5pt"> fout->pixTot = x</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:9.5pt"> </span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:9.5pt"> </span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">On Tue, May 2, 2017 at 7:59 AM, Su, Jian (GSFC-610.2)[ADNET SYSTEMS INC] <<a href="mailto:jian.su@nasa.gov" target="_blank">jian.su@nasa.gov</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri">Thank you Rick,</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri">Filedimdef successfully added lat/lon, but how can we remove DIM_001/ DIM_002 and assign lat/lon to the variable pixTot?</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> file global attributes:</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> dimensions:</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> DIM_001 = 1440</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> DIM_002 = 720</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> lat = 1440</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> lon = 720</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> variables:</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> integer pixTot ( DIM_001, DIM_002 )</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> CodeMissingValue : -9999</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> DimensionNames : nlon,nlat</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Calibri"> </span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-family:Calibri;color:black">From:
</span></b><span style="font-family:Calibri;color:black">Rick Brownrigg <<a href="mailto:brownrig@ucar.edu" target="_blank">brownrig@ucar.edu</a>><br>
<b>Date: </b>Monday, May 1, 2017 at 4:15 PM<br>
<b>To: </b>"Su, Jian (GSFC-610.2)[ADNET SYSTEMS INC]" <<a href="mailto:jian.su@nasa.gov" target="_blank">jian.su@nasa.gov</a>><br>
<b>Cc: </b>"<a href="mailto:ncl-talk@ucar.edu" target="_blank">ncl-talk@ucar.edu</a>" <<a href="mailto:ncl-talk@ucar.edu" target="_blank">ncl-talk@ucar.edu</a>><br>
<b>Subject: </b>Re: [ncl-talk] change dimensions to lat/lon</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt">Hi Jay,<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt">There are probably several ways to do this. One that occurs to me is to create the dimensions in the new file with the "filedimdef" procedure:<br>
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<a href="http://ncl.ucar.edu/Document/Functions/Built-in/filedimdef.shtml" target="_blank">
http://ncl.ucar.edu/Document/Functions/Built-in/filedimdef.shtml</a><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt">So in your case, that might look something like:<br>
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filedimdef(f,(/"lat","lon"/),(/1440, 720/), (/False,False/))<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt">You can add the other information directly as global attributes of the file:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> f->LatitudeResolution=0.25<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> f->LongitudeResolution=0.25<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"> ...etc...<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Hope that helps...<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Rick<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">On Mon, May 1, 2017 at 12:28 PM, Su, Jian (GSFC-610.2)[ADNET SYSTEMS INC] <<a href="mailto:jian.su@nasa.gov" target="_blank">jian.su@nasa.gov</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Hello,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I am using ncl to convert HDF5 files to netCDF, and one of them looks like this:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Variable: f<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Type: file<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">filename: out<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">path: out.nc4<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> file global attributes:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> dimensions:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> DIM_001 = 1440<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> DIM_002 = 720<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> variables:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> integer pixTot ( DIM_001, DIM_002 )<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> CodeMissingValue : -9999<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> DimensionNames : nlon,nlat<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">How can I change DIM_001 and DIM_002 to lat/lon, and add the grid information eg,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">LatitudeResolution=0.25;<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">LongitudeResolution=0.25;<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">NorthBoundingCoordinate=90;<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">SouthBoundingCoordinate=-90;<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">EastBoundingCoordinate=180;<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">WestBoundingCoordinate=-180;<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Thanks,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Jay<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"><br>
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</blockquote>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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</blockquote>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><br>
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</blockquote>
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<p class="MsoNormal"><o:p> </o:p></p>
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