<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Dennis,<div class=""><br class=""></div><div class="">I am running it on my desktop (Mac), but have copied a file to Yellowstone. You can see an example at:<div class=""><br class=""></div><div class="">/glade/scratch/bardeenc/gps031001g.002.hdf5</div><div class=""><br class=""></div><div class="">Thanks,</div><div class=""><br class=""></div><div class="">Chuck</div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On Jan 23, 2017, at 1:20 PM, Dennis Shea <<a href="mailto:shea@ucar.edu" class="">shea@ucar.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div class=""><div class=""><div class=""><div class=""><div class=""><div class=""><div class=""><div class=""><div class="">Likely, ncl-6.4.0 will read the file.<br class="">I went to site and it want us to register. Just don't wan to do that.<br class=""><br class=""><br class=""></div>Are you on a CISL (eg: yellowstone) box? Where?<br class=""><br class=""></div><div class=""><br class=""></div>If not, make the data available via WWW or ftp to:<br class=""><br class=""></div>ftp <a href="http://ftp.cgd.ucar.edu/" class="">ftp.cgd.ucar.edu</a><br class=""></div>anonymous<br class=""></div>your_email<br class=""></div>cd incoming<br class=""></div>put your_file<br class=""></div>quit<br class=""><br class=""></div>THX<br class=""></div><div class="gmail_extra"><br class=""><div class="gmail_quote">On Mon, Jan 23, 2017 at 12:32 PM, Charles Bardeen <span dir="ltr" class=""><<a href="mailto:bardeenc@ucar.edu" target="_blank" class="">bardeenc@ucar.edu</a>></span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word" class="">I am trying to read hdf5 data produced from the Madrigal archive ( <a href="http://cedar.openmadrigal.org/" target="_blank" class="">http://cedar.openmadrigal.org</a> ). The file format contains groups and compounds. I seem to be able to access the group, but have been unable to access the data that I want from the compound. Can you tell how to make this work? The file format and the commands I have tried are shown below.<div class=""><br class=""></div><div class="">Thanks,</div><div class=""><br class=""></div><div class="">Chuck</div><div class=""><br class=""></div><div class=""><div class=""><span class="m_-5522978123297025145Apple-style-span" style="border-collapse:separate;font-variant-ligatures:normal;font-variant-numeric:normal;font-variant-alternates:normal;font-variant-east-asian:normal;line-height:normal;border-spacing:0px"><span class="m_-5522978123297025145Apple-style-span" style="border-collapse:separate;font-variant-ligatures:normal;font-variant-numeric:normal;font-variant-alternates:normal;font-variant-east-asian:normal;line-height:normal;border-spacing:0px"><div style="word-wrap:break-word" class=""><span class="m_-5522978123297025145Apple-style-span" style="border-collapse:separate;font-variant-ligatures:normal;font-variant-numeric:normal;font-variant-alternates:normal;font-variant-east-asian:normal;line-height:normal;border-spacing:0px"><div style="word-wrap:break-word" class=""><span class="m_-5522978123297025145Apple-style-span" style="border-collapse:separate;font-variant-ligatures:normal;font-variant-numeric:normal;font-variant-alternates:normal;font-variant-east-asian:normal;line-height:normal;border-spacing:0px"><div style="word-wrap:break-word" class=""><div class="">------------------------------<wbr class="">------------------------------<wbr class="">--</div><div class="">Charles Bardeen</div><div class="">National Center for Atmospheric Research</div><div class="">P.O. Box 3000, Boulder, CO 80307-3000</div><div class="">Phone: <a href="tel:(303)%20497-1752" value="+13034971752" target="_blank" class="">(303) 497-1752</a>, Fax: <a href="tel:(303)%20497-1400" value="+13034971400" target="_blank" class="">(303) 497-1400</a></div><div class=""><a href="mailto:bardeenc@ucar.edu" target="_blank" class="">bardeenc@ucar.edu</a></div><div class=""><br class=""></div></div></span></div></span></div></span></span></div></div><div class=""><br class=""></div><div class=""><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> Copyright (C) 1995-2015 - All Rights Reserved</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> University Corporation for Atmospheric Research</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> NCAR Command Language Version 6.3.0</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> The use of this software is governed by a License Agreement.</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> See <a href="http://www.ncl.ucar.edu/" target="_blank" class="">http://www.ncl.ucar.edu/</a> for more details.</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">ncl 0> x = addfile("gps031001g.002.hdf5", "r")</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">ncl 1> print(x)</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156);min-height:13px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Variable: x</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Type: file</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">filename: gps031001g.002</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">path: gps031001g.002.hdf5</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> file global attributes:</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> dimensions:</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> DIM_000 = 10</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> DIM_001 = 0</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> DIM_002 = 0</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> DIM_003 = 0</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> variables:</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> group </Data></span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156);min-height:13px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156);min-height:13px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> compound <Table_Layout> (year, month, day, hour, min, sec, ut1_unix, ut2_unix, recno, gdlat, glon, tec, dtec) (DIM_000)</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156);min-height:13px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> group </Metadata></span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156);min-height:13px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156);min-height:13px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> compound <Data_Parameters> (mnemonic, description, isError, units, category) (DIM_000)</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156);min-height:13px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> compound <Experiment_Notes> (File Notes) (DIM_000)</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156);min-height:13px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> compound <Experiment_Parameters> (name, value) (DIM_000)</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156);min-height:13px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class="">ncl 5> g = x=>Data</div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">ncl 6> print(g)</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156);min-height:13px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Variable: g</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Type: file</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">filename: gps031001g.002</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">path: gps031001g.002.hdf5</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> file global attributes:</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> dimensions:</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> DIM_000 = 10</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> DIM_001 = 0</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> DIM_002 = 0</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> DIM_003 = 0</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> variables:</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> compound <Table_Layout> (year, month, day, hour, min, sec, ut1_unix, ut2_unix, recno, gdlat, glon, tec, dtec) (DIM_000)</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156);min-height:13px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">ncl 7> tec = g->/Table_Layout.tec</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">fatal:["Execute.c":6332]:<wbr class="">variable (/Table_Layout.tec) is not in file (g)</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">fatal:["Execute.c":8573]:<wbr class="">Execute: Error occurred at or near line 7</span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""><br class=""></span></div><div style="margin:0px;font-size:11px;line-height:normal;font-family:Menlo;background-color:rgb(254,244,156);min-height:13px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><div style="margin:0px;line-height:normal" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">ncl 9> tec = x->/Data/Table_Layout.tec</span></div><div style="margin:0px;line-height:normal" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">fatal:["Execute.c":6332]:<wbr class="">variable (/Data/Table_Layout.tec) is not in file (x)</span></div><div style="margin:0px;line-height:normal" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">fatal:["Execute.c":8573]:<wbr class="">Execute: Error occurred at or near line 9</span></div><div class=""><span style="font-variant-ligatures:no-common-ligatures" class=""><br class=""></span></div></div></div><div class=""><br class=""><div class="">
<span class="m_-5522978123297025145Apple-style-span" style="border-collapse:separate;font-variant-ligatures:normal;font-variant-numeric:normal;font-variant-alternates:normal;font-variant-east-asian:normal;line-height:normal;border-spacing:0px"><span class="m_-5522978123297025145Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-ligatures: normal; font-variant-position: normal; font-variant-caps: normal; font-variant-numeric: normal; font-variant-alternates: normal; font-variant-east-asian: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px;"><div style="word-wrap:break-word" class=""><span class="m_-5522978123297025145Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-ligatures: normal; font-variant-position: normal; font-variant-caps: normal; font-variant-numeric: normal; font-variant-alternates: normal; font-variant-east-asian: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px;"><div style="word-wrap:break-word" class=""><span class="m_-5522978123297025145Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-ligatures: normal; font-variant-position: normal; font-variant-caps: normal; font-variant-numeric: normal; font-variant-alternates: normal; font-variant-east-asian: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px;"><div style="word-wrap:break-word" class=""><div class=""><br class=""></div></div></span></div></span></div></span></span></div></div></div><br class="">______________________________<wbr class="">_________________<br class="">
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<span class="Apple-style-span" style="border-collapse: separate; font-variant-ligatures: normal; font-variant-position: normal; font-variant-numeric: normal; font-variant-alternates: normal; font-variant-east-asian: normal; line-height: normal; border-spacing: 0px;"><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; " class=""><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; " class=""><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; " class=""><div class="">--------------------------------------------------------------</div><div class="">Charles Bardeen</div><div class="">National Center for Atmospheric Research</div><div class="">P.O. Box 3000, Boulder, CO 80307-3000</div><div class="">Phone: (303) 497-1752, Fax: (303) 497-1400</div><div class=""><a href="mailto:bardeenc@ucar.edu" class="">bardeenc@ucar.edu</a></div></div></span></div></span></div></span></span>
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