<div dir="ltr"><div dir="auto">Th</div><div class="gmail_extra"><br><div class="gmail_quote">On Dec 21, 2016 7:02 PM, "Mary Haley" <<a href="mailto:haley@ucar.edu" target="_blank">haley@ucar.edu</a>> wrote:<br type="attribution"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div class="gmail_default" style="font-size:small">We need more information in order to debug this, as it's not clear where the code is hanging.</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">Here are three things that might help debug and/or fix the issue:</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">1)</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">It's possible that your script is requesting a lot of memory. I suggest that you insert a bunch of "printVarSummary" commands in your code, so you can track the progress of your script. This will also help you see how large your variables are, whether you need more "delete" commands to free up memory.</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">Here's an example:</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small"><div class="gmail_default"><font face="monospace, monospace"> x = a[:]->Times<br> printVarSummary(x)</font></div><div class="gmail_default"><font face="monospace, monospace"> time0 = wrf_times_c(x, 0)<br> printVarSummary(time0)<br>. . .</font></div><div class="gmail_default"><font face="monospace, monospace"><br></font></div></div><div class="gmail_default" style="font-size:small"><div class="gmail_default"><font face="monospace, monospace"> p1 = wrf_user_getvar(a,"pressure",-<wbr>1) ; pressure </font></div><div class="gmail_default"><font face="monospace, monospace"> p = dim_avg_n_Wrap(p1(startindx:en<wbr>dindx,:,:,:),0)</font></div><div class="gmail_default"><font face="monospace, monospace"> delete(p1)<br> printVarSummary(p)</font></div><div class="gmail_default"><font face="monospace, monospace"> . . .</font></div><div class="gmail_default"><div class="gmail_default"><font face="monospace, monospace"> tc1 = wrf_user_getvar(a,"tc",-1) ; 3D temperature </font></div><div class="gmail_default"><font face="monospace, monospace"> tc = dim_avg_n_Wrap(tc1(startindx:e<wbr>ndindx,:,:,:),0)</font></div><div class="gmail_default"><font face="monospace, monospace"> delete(tc1)</font></div><div class="gmail_default"><font face="monospace, monospace"> tc_plane = wrf_user_intrp3d(tc,p,"h",leve<wbr>l,0.,False)</font></div><div class="gmail_default"><font face="monospace, monospace"> delete(tc)</font></div><div class="gmail_default"><font face="monospace, monospace"> printVarSummary(tc_plane)</font></div><div class="gmail_default"><font face="monospace, monospace"> ... etc...<br></font><br></div></div></div><div class="gmail_default" style="font-size:small">2)</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">A "debugging trick" that I tell people who are not sure how far NCL is getting into their script before it hangs, is to use the "-x" option when you run your NCL script. This will cause every line of the script to be echoed to the screen as it is being executed. </div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">In order for "-x" to work properly, you need to comment out the "begin" and "end" statements, and then you can run your script with:</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small"> ncl -x z85hPaPlots.ncl</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">3)</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">If the script appears to be bogging down in the section that writes the NetCDF file, then you may want to use the "efficient" method for writing a NetCDF file. If you go to this page:</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default"><a href="http://www.ncl.ucar.edu/Applications/o-netcdf.shtml" target="_blank">http://www.ncl.ucar.edu/Applic<wbr>ations/o-netcdf.shtml</a><br></div><div class="gmail_default"><br></div><div class="gmail_default">you will see a "method 1" (which is the method you're using) and a "method 2" which is the more efficient method. I'm not sure how much this will help in your case, since you are only writing a few variables, but it's worth a look. The key is to predefine your variables on the output file before you actually write the variables, and that will cause them to be written much faster.</div><div class="gmail_default"><br></div><div class="gmail_default">Hope this helps you figure out the location of your problem, and maybe how to fix it.</div><div class="gmail_default"><br></div><div class="gmail_default">--Mary</div><div class="gmail_default"><br></div><div class="gmail_default" style="font-size:small"><span style="font-variant-ligatures:no-common-ligatures;background-color:rgb(188,188,188);font-family:monaco;font-size:18px"><br></span></div>
<div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small"><br></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Dec 20, 2016 at 11:16 PM, afwande juliet <span dir="ltr"><<a href="mailto:afwandej965@gmail.com" target="_blank">afwandej965@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div>Dear ALL<br></div>I have a script to extract wrfoutput at 850mb, it runs but saves no output and hangs forever but no error. below is how the script reads data . Attached is the script for help. The output filename is <br> <b><a href="http://file850wind.nc" target="_blank">file850wind.nc</a></b><br><br>Variable: times<br>Type: string<br>Total Size: 7896 bytes<br> 987 values<br>Number of Dimensions: 1<br>Dimensions and sizes: [987]<br>Coordinates: <br>Number Of Attributes: 2<br> _FillValue : missing<br> description : times in file<br>(0) 1988-09-30_06:00:00<br>(1) 1988-09-30_12:00:00<br>(2) 1988-09-30_18:00:00<br>(3) 1988-10-01_00:00:00<br>(4) 1988-10-01_06:00:00<br>(5) 1988-10-01_12:00:00<br>(6) 1988-10-01_18:00:00<br>(7) 1988-10-02_00:00:00<br>(8) 1988-10-02_06:00:00<br>(9) 1988-10-02_12:00:00<br>(10) 1988-10-02_18:00:00<br>(11) 1988-10-03_00:00:00<br>(12) 1988-10-03_06:00:00<br>(13) 1988-10-03_12:00:00<br>(14) 1988-10-03_18:00:00<br>(15) 1988-10-04_00:00:00<br>(16) 1988-10-04_06:00:00<br>(17) 1988-10-04_12:00:00<br>(18) 1988-10-04_18:00:00<br>(19) 1988-10-05_00:00:00<br>(20) 1988-10-05_06:00:00<br>(21) 1988-10-05_12:00:00<br>(22) 1988-10-05_18:00:00<br>(23) 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1988-12-30_12:00:00<br>(366) 1988-12-30_18:00:00<br>(367) 1988-12-31_00:00:00<br>(368) 1988-12-31_06:00:00<br>(369) 1988-12-31_12:00:00<br>(370) 1988-12-31_18:00:00<br>(371) 1989-01-01_00:00:00<br>(372) 1989-01-01_06:00:00<br>(373) 1989-01-01_12:00:00<br>(374) 1989-01-01_18:00:00<br>(375) 1989-01-02_00:00:00<br>(376) 1989-01-02_06:00:00<br>(377) 1989-01-02_12:00:00<br>(378) 1989-01-02_18:00:00<br>(379) 1989-01-03_00:00:00<br>(380) 1989-01-03_06:00:00<br>(381) 1989-01-03_12:00:00<br>(382) 1989-01-03_18:00:00<br>(383) 1989-01-04_00:00:00<br>(384) 1989-01-04_06:00:00<br>(385) 1989-01-04_12:00:00<br>(386) 1989-01-04_18:00:00<br>(387) 1989-01-05_00:00:00<br>(388) 1989-01-05_06:00:00<br>(389) 1989-01-05_12:00:00<br>(390) 1989-01-05_18:00:00<br>(391) 1989-01-06_00:00:00<br>(392) 1989-01-06_06:00:00<br>(393) 1989-01-06_12:00:00<br>(394) 1989-01-06_18:00:00<br>(395) 1989-01-07_00:00:00<br>(396) 1989-01-07_06:00:00<br>(397) 1989-01-07_12:00:00<br>(398) 1989-01-07_18:00:00<br>(399) 1989-01-08_00:00:00<br>(400) 1989-01-08_06:00:00<br>(401) 1989-01-08_12:00:00<br>(402) 1989-01-08_18:00:00<br>(403) 1989-01-09_00:00:00<br>(404) 1989-01-09_06:00:00<br>(405) 1989-01-09_12:00:00<br>(406) 1989-01-09_18:00:00<br>(407) 1989-01-10_00:00:00<br>(408) 1989-01-10_06:00:00<br>(409) 1989-01-10_12:00:00<br>(410) 1989-01-10_18:00:00<br>(411) 1989-01-11_00:00:00<br>(412) 1989-01-11_06:00:00<br>(413) 1989-01-11_12:00:00<br>(414) 1989-01-11_18:00:00<br>(415) 1989-01-12_00:00:00<br>(416) 1989-01-12_06:00:00<br>(417) 1989-01-12_12:00:00<br>(418) 1989-01-12_18:00:00<br>(419) 1989-01-13_00:00:00<br>(420) 1989-01-13_06:00:00<br>(421) 1989-01-13_12:00:00<br>(422) 1989-01-13_18:00:00<br>(423) 1989-01-14_00:00:00<br>(424) 1989-01-14_06:00:00<br>(425) 1989-01-14_12:00:00<br>(426) 1989-01-14_18:00:00<br>(427) 1989-01-15_00:00:00<br>(428) 1989-01-15_06:00:00<br>(429) 1989-01-15_12:00:00<br>(430) 1989-01-15_18:00:00<br>(431) 1989-01-16_00:00:00<br>(432) 1989-01-16_06:00:00<br>(433) 1989-01-16_12:00:00<br>(434) 1989-01-16_18:00:00<br>(435) 1989-01-17_00:00:00<br>(436) 1989-01-17_06:00:00<br>(437) 1989-01-17_12:00:00<br>(438) 1989-01-17_18:00:00<br>(439) 1989-01-18_00:00:00<br>(440) 1989-01-18_06:00:00<br>(441) 1989-01-18_12:00:00<br>(442) 1989-01-18_18:00:00<br>(443) 1989-01-19_00:00:00<br>(444) 1989-01-19_06:00:00<br>(445) 1989-01-19_12:00:00<br>(446) 1989-01-19_18:00:00<br>(447) 1989-01-20_00:00:00<br>(448) 1989-01-20_06:00:00<br>(449) 1989-01-20_12:00:00<br>(450) 1989-01-20_18:00:00<br>(451) 1989-01-21_00:00:00<br>(452) 1989-01-21_06:00:00<br>(453) 1989-01-21_12:00:00<br>(454) 1989-01-21_18:00:00<br>(455) 1989-01-22_00:00:00<br>(456) 1989-01-22_06:00:00<br>(457) 1989-01-22_12:00:00<br>(458) 1989-01-22_18:00:00<br>(459) 1989-01-23_00:00:00<br>(460) 1989-01-23_06:00:00<br>(461) 1989-01-23_12:00:00<br>(462) 1989-01-23_18:00:00<br>(463) 1989-01-24_00:00:00<br>(464) 1989-01-24_06:00:00<br>(465) 1989-01-24_12:00:00<br>(466) 1989-01-24_18:00:00<br>(467) 1989-01-25_00:00:00<br>(468) 1989-01-25_06:00:00<br>(469) 1989-01-25_12:00:00<br>(470) 1989-01-25_18:00:00<br>(471) 1989-01-26_00:00:00<br>(472) 1989-01-26_06:00:00<br>(473) 1989-01-26_12:00:00<br>(474) 1989-01-26_18:00:00<br>(475) 1989-01-27_00:00:00<br>(476) 1989-01-27_06:00:00<br>(477) 1989-01-27_12:00:00<br>(478) 1989-01-27_18:00:00<br>(479) 1989-01-28_00:00:00<br>(480) 1989-01-28_06:00:00<br>(481) 1989-01-28_12:00:00<br>(482) 1989-01-28_18:00:00<br>(483) 1989-01-29_00:00:00<br>(484) 1989-01-29_06:00:00<br>(485) 1989-01-29_12:00:00<br>(486) 1989-01-29_18:00:00<br>(487) 1989-01-30_00:00:00<br>(488) 1989-01-30_06:00:00<br>(489) 1989-01-30_12:00:00<br>(490) 1989-01-30_18:00:00<br>(491) 1989-01-31_00:00:00<br>(492) 1989-01-31_06:00:00<br>(493) 1989-01-31_12:00:00<br>(494) 1989-01-31_18:00:00<br>(495) 1989-02-01_00:00:00<br>(496) 1989-02-01_06:00:00<br>(497) 1989-02-01_12:00:00<br>(498) 1989-02-01_18:00:00<br>(499) 1989-02-02_00:00:00<br>(500) 1989-02-02_06:00:00<br>(501) 1989-02-02_12:00:00<br>(502) 1989-02-02_18:00:00<br>(503) 1989-02-03_00:00:00<br>(504) 1989-02-03_06:00:00<br>(505) 1989-02-03_12:00:00<br>(506) 1989-02-03_18:00:00<br>(507) 1989-02-04_00:00:00<br>(508) 1989-02-04_06:00:00<br>(509) 1989-02-04_12:00:00<br>(510) 1989-02-04_18:00:00<br>(511) 1989-02-05_00:00:00<br>(512) 1989-02-05_06:00:00<br>(513) 1989-02-05_12:00:00<br>(514) 1989-02-05_18:00:00<br>(515) 1989-02-06_00:00:00<br>(516) 1989-02-06_06:00:00<br>(517) 1989-02-06_12:00:00<br>(518) 1989-02-06_18:00:00<br>(519) 1989-02-07_00:00:00<br>(520) 1989-02-07_06:00:00<br>(521) 1989-02-07_12:00:00<br>(522) 1989-02-07_18:00:00<br>(523) 1989-02-08_00:00:00<br>(524) 1989-02-08_06:00:00<br>(525) 1989-02-08_12:00:00<br>(526) 1989-02-08_18:00:00<br>(527) 1989-02-09_00:00:00<br>(528) 1989-02-09_06:00:00<br>(529) 1989-02-09_12:00:00<br>(530) 1989-02-09_18:00:00<br>(531) 1989-02-10_00:00:00<br>(532) 1989-02-10_06:00:00<br>(533) 1989-02-10_12:00:00<br>(534) 1989-02-10_18:00:00<br>(535) 1989-02-11_00:00:00<br>(536) 1989-02-11_06:00:00<br>(537) 1989-02-11_12:00:00<br>(538) 1989-02-11_18:00:00<br>(539) 1989-02-12_00:00:00<br>(540) 1989-02-12_06:00:00<br>(541) 1989-02-12_12:00:00<br>(542) 1989-02-12_18:00:00<br>(543) 1989-02-13_00:00:00<br>(544) 1989-02-13_06:00:00<br>(545) 1989-02-13_12:00:00<br>(546) 1989-02-13_18:00:00<br>(547) 1989-02-14_00:00:00<br>(548) 1989-02-14_06:00:00<br>(549) 1989-02-14_12:00:00<br>(550) 1989-02-14_18:00:00<br>(551) 1989-02-15_00:00:00<br>(552) 1989-02-15_06:00:00<br>(553) 1989-02-15_12:00:00<br>(554) 1989-02-15_18:00:00<br>(555) 1989-02-16_00:00:00<br>(556) 1989-02-16_06:00:00<br>(557) 1989-02-16_12:00:00<br>(558) 1989-02-16_18:00:00<br>(559) 1989-02-17_00:00:00<br>(560) 1989-02-17_06:00:00<br>(561) 1989-02-17_12:00:00<br>(562) 1989-02-17_18:00:00<br>(563) 1989-02-18_00:00:00<br>(564) 1989-02-18_06:00:00<br>(565) 1989-02-18_12:00:00<br>(566) 1989-02-18_18:00:00<br>(567) 1989-02-19_00:00:00<br>(568) 1989-02-19_06:00:00<br>(569) 1989-02-19_12:00:00<br>(570) 1989-02-19_18:00:00<br>(571) 1989-02-20_00:00:00<br>(572) 1989-02-20_06:00:00<br>(573) 1989-02-20_12:00:00<br>(574) 1989-02-20_18:00:00<br>(575) 1989-02-21_00:00:00<br>(576) 1989-02-21_06:00:00<br>(577) 1989-02-21_12:00:00<br>(578) 1989-02-21_18:00:00<br>(579) 1989-02-22_00:00:00<br>(580) 1989-02-22_06:00:00<br>(581) 1989-02-22_12:00:00<br>(582) 1989-02-22_18:00:00<br>(583) 1989-02-23_00:00:00<br>(584) 1989-02-23_06:00:00<br>(585) 1989-02-23_12:00:00<br>(586) 1989-02-23_18:00:00<br>(587) 1989-02-24_00:00:00<br>(588) 1989-02-24_06:00:00<br>(589) 1989-02-24_12:00:00<br>(590) 1989-02-24_18:00:00<br>(591) 1989-02-25_00:00:00<br>(592) 1989-02-25_06:00:00<br>(593) 1989-02-25_12:00:00<br>(594) 1989-02-25_18:00:00<br>(595) 1989-02-26_00:00:00<br>(596) 1989-02-26_06:00:00<br>(597) 1989-02-26_12:00:00<br>(598) 1989-02-26_18:00:00<br>(599) 1989-02-27_00:00:00<br>(600) 1989-02-27_06:00:00<br>(601) 1989-02-27_12:00:00<br>(602) 1989-02-27_18:00:00<br>(603) 1989-02-28_00:00:00<br>(604) 1989-02-28_06:00:00<br>(605) 1989-02-28_12:00:00<br>(606) 1989-02-28_18:00:00<br>(607) 1989-03-01_00:00:00<br>(608) 1989-03-01_06:00:00<br>(609) 1989-03-01_12:00:00<br>(610) 1989-03-01_18:00:00<br>(611) 1989-03-02_00:00:00<br>(612) 1989-03-02_06:00:00<br>(613) 1989-03-02_12:00:00<br>(614) 1989-03-02_18:00:00<br>(615) 1989-03-03_00:00:00<br>(616) 1989-03-03_06:00:00<br>(617) 1989-03-03_12:00:00<br>(618) 1989-03-03_18:00:00<br>(619) 1989-03-04_00:00:00<br>(620) 1989-03-04_06:00:00<br>(621) 1989-03-04_12:00:00<br>(622) 1989-03-04_18:00:00<br>(623) 1989-03-05_00:00:00<br>(624) 1989-03-05_06:00:00<br>(625) 1989-03-05_12:00:00<br>(626) 1989-03-05_18:00:00<br>(627) 1989-03-06_00:00:00<br>(628) 1989-03-06_06:00:00<br>(629) 1989-03-06_12:00:00<br>(630) 1989-03-06_18:00:00<br>(631) 1989-03-07_00:00:00<br>(632) 1989-03-07_06:00:00<br>(633) 1989-03-07_12:00:00<br>(634) 1989-03-07_18:00:00<br>(635) 1989-03-08_00:00:00<br>(636) 1989-03-08_06:00:00<br>(637) 1989-03-08_12:00:00<br>(638) 1989-03-08_18:00:00<br>(639) 1989-03-09_00:00:00<br>(640) 1989-03-09_06:00:00<br>(641) 1989-03-09_12:00:00<br>(642) 1989-03-09_18:00:00<br>(643) 1989-03-10_00:00:00<br>(644) 1989-03-10_06:00:00<br>(645) 1989-03-10_12:00:00<br>(646) 1989-03-10_18:00:00<br>(647) 1989-03-11_00:00:00<br>(648) 1989-03-11_06:00:00<br>(649) 1989-03-11_12:00:00<br>(650) 1989-03-11_18:00:00<br>(651) 1989-03-12_00:00:00<br>(652) 1989-03-12_06:00:00<br>(653) 1989-03-12_12:00:00<br>(654) 1989-03-12_18:00:00<br>(655) 1989-03-13_00:00:00<br>(656) 1989-03-13_06:00:00<br>(657) 1989-03-13_12:00:00<br>(658) 1989-03-13_18:00:00<br>(659) 1989-03-14_00:00:00<br>(660) 1989-03-14_06:00:00<br>(661) 1989-03-14_12:00:00<br>(662) 1989-03-14_18:00:00<br>(663) 1989-03-15_00:00:00<br>(664) 1989-03-15_06:00:00<br>(665) 1989-03-15_12:00:00<br>(666) 1989-03-15_18:00:00<br>(667) 1989-03-16_00:00:00<br>(668) 1989-03-16_06:00:00<br>(669) 1989-03-16_12:00:00<br>(670) 1989-03-16_18:00:00<br>(671) 1989-03-17_00:00:00<br>(672) 1989-03-17_06:00:00<br>(673) 1989-03-17_12:00:00<br>(674) 1989-03-17_18:00:00<br>(675) 1989-03-18_00:00:00<br>(676) 1989-03-18_06:00:00<br>(677) 1989-03-18_12:00:00<br>(678) 1989-03-18_18:00:00<br>(679) 1989-03-19_00:00:00<br>(680) 1989-03-19_06:00:00<br>(681) 1989-03-19_12:00:00<br>(682) 1989-03-19_18:00:00<br>(683) 1989-03-20_00:00:00<br>(684) 1989-03-20_06:00:00<br>(685) 1989-03-20_12:00:00<br>(686) 1989-03-20_18:00:00<br>(687) 1989-03-21_00:00:00<br>(688) 1989-03-21_06:00:00<br>(689) 1989-03-21_12:00:00<br>(690) 1989-03-21_18:00:00<br>(691) 1989-03-22_00:00:00<br>(692) 1989-03-22_06:00:00<br>(693) 1989-03-22_12:00:00<br>(694) 1989-03-22_18:00:00<br>(695) 1989-03-23_00:00:00<br>(696) 1989-03-23_06:00:00<br>(697) 1989-03-23_12:00:00<br>(698) 1989-03-23_18:00:00<br>(699) 1989-03-24_00:00:00<br>(700) 1989-03-24_06:00:00<br>(701) 1989-03-24_12:00:00<br>(702) 1989-03-24_18:00:00<br>(703) 1989-03-25_00:00:00<br>(704) 1989-03-25_06:00:00<br>(705) 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<br></blockquote></div>Thanks very much. I tried the script later but got memory issue error. I am not very sure how to go about this issue<br></div></blockquote><div>fatal:NhlRealloc Failed:[errno=12]<br>fatal:Memory allocation failure:[errno=12]<br>fatal:["Execute.c":8575]:<wbr>Execute: Error occurred at or near line 900 in file /opt/NCL/V630/lib/ncarg/<wbr>nclscripts/wrf/WRFUserARW.ncl<br><br>fatal:["Execute.c":8575]:<wbr>Execute: Error occurred at or near line 39 in file z850hPaPlots.ncl <br></div></div></div>
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