<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><blockquote type="cite" class="">And you don't want to try to add 75.0 to the fill value in the script.</blockquote><br class=""></div>Just to respond to this and clarify, the missing value in the documentation that was linked to is 330. ( <a href="http://www.cpc.ncep.noaa.gov/products/global_precip/html/README" class="">http://www.cpc.ncep.noaa.gov/products/global_precip/html/README</a> )<div class=""><br class=""></div><div class="">When I put the example script together I first posted, I just saw what was obviously a missing value at 255, having forgotten the offset. 255 is a very reasonable value in the world of brightness temps, so apologies for that, in my haste I made a mistake there in the first script. </div><div class=""><br class=""></div><div class="">So the real _FillValue should be 330 (i.e. 255+75 )</div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On 5 Feb 2016, at 09:15, HAVENER, KEVIN F GS-12 USAF ACC 14 WS/WXED <<a href="mailto:kevin.havener@us.af.mil" class="">kevin.havener@us.af.mil</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">And you don't want to try to add 75.0 to the fill value in the script.<br class=""><br class="">Kevin Havener<br class=""><br class="">-----Original Message-----<br class="">From: <a href="mailto:ncl-talk-bounces@ucar.edu" class="">ncl-talk-bounces@ucar.edu</a> [<a href="mailto:ncl-talk-bounces@ucar.edu" class="">mailto:ncl-talk-bounces@ucar.edu</a>] On Behalf Of alesall<br class="">Sent: Friday, February 05, 2016 9:03 AM<br class="">To: Benjamin Alabi<br class="">Cc: <a href="mailto:ncl-talk@ucar.edu" class="">ncl-talk@ucar.edu</a><br class="">Subject: Re: [ncl-talk] Data conversion<br class=""><br class=""><br class="">the error message is:<br class=""><br class="">fatal:Undefined identifier: (byte2flt) is undefined, can't continue<br class=""><br class="">it is not finding the function “byte2flt"<br class="">on the documentation page, this one: <<a href="http://ncl.ucar.edu/Document/Functions/Contributed/byte2flt.shtml" class="">http://ncl.ucar.edu/Document/Functions/Contributed/byte2flt.shtml</a>><br class="">it says that such function is in the “contributed” file.<br class=""><br class="">you need to add statements such as:<br class="">load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/contributed.ncl <<a href="http://ncl.ucar.edu/Document/Functions/Contributed/contrib.shtml" class="">http://ncl.ucar.edu/Document/Functions/Contributed/contrib.shtml</a>> "<br class="">at the beginning of your script, actually before the “begin”<br class=""><br class="">I have all of these in my scripts:<br class=""><br class="">load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl"<br class="">load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_csm.ncl"<br class="">load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/shea_util.ncl"<br class="">load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/contributed.ncl"<br class=""><br class="">hope this helps!<br class=""><br class=""><br class=""><br class="">--<br class="">Alessandra Giannini<br class="">IRI for Climate and Society - The Earth Institute at Columbia University P.O. Box 1000, Palisades NY 10964-8000<br class="">phone/fax: +1 845 680-4473/4864 - email: <a href="mailto:alesall@iri.columbia.edu" class="">alesall@iri.columbia.edu</a><br class=""><br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>On Feb 5, 2016, at 8:57 AM, Benjamin Alabi <<a href="mailto:alabibenjamin2@gmail.com" class="">alabibenjamin2@gmail.com</a>> wrote:<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>Goodday sir,<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>I appreciate your effort in guiding me. I'm new in this platform, please dont be offended by sending the message three times, I'm just learning to get help from here. <br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>I used the script, <br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>begin<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>file_name_read = "merg_2012090101_4km-pixel"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u = byte2flt( fbindirread (file_name_read ,0, (/2,3298,9896/),"ubyte")) +75.0<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>lon_g = fspan(0.0182,360,9896)<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>lat_g = fspan(59.982,59.982-0.036383683*3298,3298)<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span> <br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>lon_g@units = "degrees_east"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>lon_g@long_name = "longitude"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>lon_g@short_name = "longitude"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>lon_g!0 = "lon"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>lon_g&lon = lon_g<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>lat_g@units = "degrees_north"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>lat_g@long_name = "latitude"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>lat_g@short_name = "latitude"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>lat_g!0 = "lat"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>lat_g&lat = lat_g<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u!0 = "time"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u!1 = "lat"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u!2 = "lon"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u&lat = lat_g<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u&lon = lon_g<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u@_FillValue= 255+75.0<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>wks = gsn_open_wks("X11","")<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>res = True<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>res@cnFillOn = True<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>res@cnFillMode = "RasterFill"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>res@cnLinesOn = False<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>plot = gsn_csm_contour_map(wks, ir_u(0,:,:), res)<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>ncout = addfile(file_name_read+".nc","c")<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>ncout->ir_data = ir_u<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>end<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>But it was generating this error:<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>fatal:Undefined identifier: (byte2flt) is undefined, can't continue<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>fatal:["Execute.c":7741]:Execute: Error occurred at or near line 41<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>Waiting for guide, Thanks.<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span>On Thu, Feb 4, 2016 at 8:07 PM, Alan Brammer <<a href="mailto:abrammer@albany.edu" class="">abrammer@albany.edu</a>> wrote:<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>Forgot the offset, which is mentioned in the link Kevin sent. <br class=""><br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u = byte2flt( fbindirread (file_name_read ,0, (/2,3298,9896/),"ubyte")) +75.<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u@_FillValue= 255+75.<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>"Each record is a 9896 x 3298 Fortran array of IR brightness temperatures that have been scaled to fit into 1-byte by subtracting "75" from each datum. Therefore it is necessary for the user to add a value of "75" to each data value when using the data."<br class=""><br class=""><br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>On 4 Feb 2016, at 13:30, Alan Brammer <<a href="mailto:abrammer@albany.edu" class="">abrammer@albany.edu</a>> wrote:<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>ok, wow. Don’t send the same message 3 times, if the first answers weren’t complete at least expand and attempt something not just copy paste the same lines again. <br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>as said before .Z means it’s compressed. gunzip merg_2016020123_4km-pixel.Z will uncompress it. Then you have a binary file as a small amount of googling would have told you. <br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>The same search would have linked you to various messages on here and various scripts where other people have included simple examples of this file type (myself included). Here is an example of reading and making a simple plot. There are plenty of examples on how to write netcdf on the NCL website so you should develop code from there. Most simple example at bottom of script below. <br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><a href="https://www.ncl.ucar.edu/Applications/o-netcdf.shtml" class="">https://www.ncl.ucar.edu/Applications/o-netcdf.shtml</a><br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>Read the documentation on the below functions and understand what is occurring .<br class=""><br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>begin<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>file_name_read = "merg_2016020123_4km-pixel"<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u = byte2flt( fbindirread (file_name_read ,0, (/2,3298,9896/),"ubyte")) <br class=""><br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>lon_g = fspan(0.0182,360,9896)<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>lat_g = fspan(59.982,59.982-0.036383683*3298,3298)<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span> <br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>lon_g@units = "degrees_east"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>lon_g@long_name = "longitude"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>lon_g@short_name = "longitude"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>lon_g!0 = "lon"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>lon_g&lon = lon_g<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>lat_g@units = "degrees_north"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>lat_g@long_name = "latitude"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>lat_g@short_name = "latitude"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>lat_g!0 = "lat"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>lat_g&lat = lat_g<br class=""><br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u!0 = "time"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u!1 = "lat"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u!2 = "lon"<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u&lat = lat_g<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u&lon = lon_g<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>ir_u@_FillValue= 255<br class=""><br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>wks = gsn_open_wks("X11","")<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>res = True<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>res@cnFillOn = True<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>res@cnFillMode = "RasterFill"<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>res@cnLinesOn = False<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>plot = gsn_csm_contour_map(wks, ir_u(0,:,:), res)<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>ncout = addfile(file_name_read+”.nc”,”c”)<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>ncout->ir_data = ir_u<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>end<br class=""><br class=""><br class=""><br class=""><br class=""><br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>On 4 Feb 2016, at 13:04, Benjamin Alabi <alabibenjamin2@gmail.com> wrote:<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>Thanks for your assistance sir. I've tried the cdo to get general information on the data, but it didn't work<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>I need help from someone that can guide me to convert this data format - 'merg_2012091000_4km-pixel.Z' to netcdf format.<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>I download Gobally-merged (60N-60S) pixel-resolution IR brightness temperature data (equivalent blackbody temps), merged from all available geostationary satellites (GOES-8/10, METEOSAT-7/5)<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>This is the link:<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>http://mirador.gsfc.nasa.gov/cgi-bin/mirador/presentNavigation.pl?tree=project&dataset=Global-merged%20IR%20Brightness%20Temperature%20Data&project=TRMM&dataGroup=Ancillary&version=001&CGISESSID=25c6337b80163b3743e8bea85d015558.<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span>I really want it to be in netcdf format.<br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><span class="Apple-tab-span" style="white-space:pre">        </span><br class=""><span class="Apple-tab-span" 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