<div dir="ltr"><div class="gmail_default" style="font-family:verdana,sans-serif">Gerry,</div><div class="gmail_default" style="font-family:verdana,sans-serif"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif">This message tells you that you have a HDF5 version used/installed is different to</div><div class="gmail_default" style="font-family:verdana,sans-serif">what NCL used.</div><div class="gmail_default" style="font-family:verdana,sans-serif"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif">Usually, just set env. variable <span style="font-size:12.8000001907349px;font-family:arial,sans-serif">HDF5_DISABLE_VERSION_CHECK to 1,</span></div><div class="gmail_default" style="font-family:verdana,sans-serif"><span style="font-size:12.8000001907349px;font-family:arial,sans-serif">as suggested in the error message, should solve your problem.</span></div><div class="gmail_default" style="font-family:verdana,sans-serif"><span style="font-size:12.8000001907349px;font-family:arial,sans-serif">Or, you probably need to switch your current HDF5 off.</span></div><div class="gmail_default" style="font-family:verdana,sans-serif"><span style="font-size:12.8000001907349px;font-family:arial,sans-serif"><br></span></div><div class="gmail_default" style="font-family:verdana,sans-serif"><span style="font-size:12.8000001907349px;font-family:arial,sans-serif">Regards,</span></div><div class="gmail_default" style="font-family:verdana,sans-serif"><span style="font-size:12.8000001907349px;font-family:arial,sans-serif"><br></span></div><div class="gmail_default" style="font-family:verdana,sans-serif"><span style="font-size:12.8000001907349px;font-family:arial,sans-serif">Wei</span></div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature"><div dir="ltr"><font face="tahoma, sans-serif">================================================</font><div><font face="tahoma, sans-serif">1850 Table Mesa Dr.</font></div><div><font face="tahoma, sans-serif">Boulder, CO 80307</font></div><div><font face="tahoma, sans-serif">Phone: 303-497-8924</font></div></div></div></div>
<br><div class="gmail_quote">On Tue, Dec 16, 2014 at 2:40 PM, Gerry Creager - NOAA Affiliate <span dir="ltr"><<a href="mailto:gerry.creager@noaa.gov" target="_blank">gerry.creager@noaa.gov</a>></span> wrote:<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">We attempted to run the attached script against a wrfout, and see the following error:<div><br></div><div><div>Warning! ***HDF5 library version mismatched error***</div><div>The HDF5 header files used to compile this application do not match</div><div>the version used by the HDF5 library to which this application is linked.</div><div>Data corruption or segmentation faults may occur if the application continues.</div><div>This can happen when an application was compiled by one version of HDF5 but</div><div>linked with a different version of static or shared HDF5 library.</div><div>You should recompile the application or check your shared library related</div><div>settings such as 'LD_LIBRARY_PATH'.</div><div>You can, at your own risk, disable this warning by setting the environment</div><div>variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.</div><div>Setting it to 2 or higher will suppress the warning messages totally.</div><div>Headers are 1.8.5, library is 1.8.13</div><div><span style="white-space:pre-wrap"> </span> SUMMARY OF THE HDF5 CONFIGURATION</div><div><span style="white-space:pre-wrap"> </span> =================================</div><div><br></div><div>General Information:</div><div>-------------------</div><div><span style="white-space:pre-wrap"> </span> HDF5 Version: 1.8.13</div><div><span style="white-space:pre-wrap"> </span> Configured on: Sun Aug 31 08:57:09 MDT 2014</div><div><span style="white-space:pre-wrap"> </span> Configured by: haley@k5</div><div><span style="white-space:pre-wrap"> </span> Configure mode: production</div><div><span style="white-space:pre-wrap"> </span> Host system: i686-pc-linux-gnu</div><div><span style="white-space:pre-wrap"> </span> Uname information: Linux k5 2.6.18-371.9.1.el5 #1 SMP Tue May 13 06:54:02 EDT 2014 i686 i686 i386 GNU/Linux</div><div><span style="white-space:pre-wrap"> </span> Byte sex: little-endian</div><div><span style="white-space:pre-wrap"> </span> Libraries: static</div><div><span style="white-space:pre-wrap"> </span> Installation point: /d2/haley/external</div><div><br></div><div>Compiling Options:</div><div>------------------</div><div> Compilation Mode: production</div><div> C Compiler: /usr/bin/gcc ( gcc (GCC) 4.1.2 20080704 )</div><div> CFLAGS: -fPIC</div><div> H5_CFLAGS: -std=c99 -pedantic -Wall -Wextra -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -Wno-long-long -Wfloat-equal -Wmissing-format-attribute -Wmissing-noreturn -Wpacked -Wdisabled-optimization -Wformat=2 -Wunreachable-code -Wendif-labels -Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch -Wvariadic-macros -Wnonnull -Winit-self -Wmissing-include-dirs -Wswitch-default -Wswitch-enum -Wunused-macros -Wunsafe-loop-optimizations -Wc++-compat -Wvolatile-register-var -O3 -fomit-frame-pointer -finline-functions</div><div> AM_CFLAGS:</div><div> CPPFLAGS: -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE</div><div> H5_CPPFLAGS: -D_POSIX_C_SOURCE=199506L -DNDEBUG -UH5_DEBUG_API</div><div> AM_CPPFLAGS: -I/d2/haley/external/include -I/d2/haley/external/include -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE</div><div> Shared C Library: no</div><div> Static C Library: yes</div><div> Statically Linked Executables: no</div><div> LDFLAGS:</div><div> H5_LDFLAGS:</div><div> AM_LDFLAGS: -L/d2/haley/external/lib -L/d2/haley/external/lib</div><div> <span style="white-space:pre-wrap"> </span> <span style="white-space:pre-wrap"> </span>Extra libraries: -lsz -lz -lrt -ldl -lm</div><div> <span style="white-space:pre-wrap"> </span> Archiver: ar</div><div> <span style="white-space:pre-wrap"> </span> <span style="white-space:pre-wrap"> </span> Ranlib: ranlib</div><div> <span style="white-space:pre-wrap"> </span> Debugged Packages:</div><div><span style="white-space:pre-wrap"> </span> API Tracing: no</div><div><br></div><div>Languages:</div><div>----------</div><div> Fortran: no</div><div><br></div><div> C++: no</div><div><br></div><div>Features:</div><div>---------</div><div> Parallel HDF5: no</div><div> High Level library: yes</div><div> Threadsafety: no</div><div> Default API Mapping: v18</div><div> With Deprecated Public Symbols: yes</div><div> I/O filters (external): deflate(zlib),szip(encoder)</div><div> I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset</div><div> MPE: no</div><div> Direct VFD: no</div><div> dmalloc: no</div><div>Clear file buffers before write: yes</div><div> Using memory checker: no</div><div> Function Stack Tracing: no</div><div> Strict File Format Checks: no</div><div> Optimization Instrumentation: no</div><div> Large File Support (LFS): yes</div><div>Bye...</div><div>Abort (core dumped)</div><div><br></div><div><br></div><div>I'll upload some sample wrfouts so you can see what the input files look like.</div><div><br></div><div>Thanks</div><span class="HOEnZb"><font color="#888888"><div>Gerry</div>-- <br><div><div dir="ltr">Gerry Creager<div>NSSL/CIMMS</div><div><a href="tel:405.325.6371" value="+14053256371" target="_blank">405.325.6371</a></div><div>++++++++++++++++++++++</div><div><div>“Big whorls have little whorls,</div><div>That feed on their velocity; </div><div>And little whorls have lesser whorls, </div><div>And so on to viscosity.” </div><div>Lewis Fry Richardson (1881-1953)</div></div></div></div>
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