<html><head><meta http-equiv="content-type" content="text/html; charset=utf-8"></head><body dir="auto"><div>Hi,</div><div><br></div><div>The error message of cdo tells you that you don't have the permission to write into the current directory. Write the file into a directory where you have permission to. Thats it.<br><br>Bye<br><div>Karin</div><div><br></div></div><div><br>Am 13.09.2014 um 15:00 schrieb "<a href="mailto:mamadoulamine.mbaye@ucad.edu.sn">mamadoulamine.mbaye@ucad.edu.sn</a>" <<a href="mailto:mamadoulamine.mbaye@ucad.edu.sn">mamadoulamine.mbaye@ucad.edu.sn</a>>:<br><br></div><blockquote type="cite"><div>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<p>Hi Azizul,</p>
<p>try to use others cdo commands (e.g ymonmean or yearmean) to see if it works.</p>
<p>you can make a quick plot with ncview or ferret to see also the data.<br>
</p>
<p>Regards,</p>
<p>Mamadou<br>
</p>
<div style="color: rgb(33, 33, 33);">
<hr tabindex="-1" style="display:inline-block; width:98%">
<div id="divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>De :</b> azizul haque <<a href="mailto:haque.azizul320@yahoo.com">haque.azizul320@yahoo.com</a>><br>
<b>Envoyé :</b> samedi 13 septembre 2014 05:51<br>
<b>À :</b> <a href="mailto:mamadoulamine.mbaye@ucad.edu.sn">mamadoulamine.mbaye@ucad.edu.sn</a>; <a href="mailto:ncl-talk@ucar.edu">ncl-talk@ucar.edu</a><br>
<b>Objet :</b> Re: [ncl-talk] Error for cdc create</font>
<div> </div>
</div>
<div>
<div style="color:#000; background-color:#fff; font-family:times new roman,new york,times,serif; font-size:10pt">
<div class="" style=""><span class="" style="">Hi Mamadou,</span></div>
<div class="" style="color:rgb(0,0,0); font-size:13px; font-family:'times new roman','new york',times,serif; background-color:transparent; font-style:normal">
<span class="" style="">Thank you very much indeed for your quick response. I checked all downloaded files using ncdum and I assume files download is done properly.</span></div>
<div class="" style="color:rgb(0,0,0); font-size:13px; font-family:'times new roman','new york',times,serif; background-color:transparent; font-style:normal">
You can see a output of ncdum here. I really do not know what to do not. I have to do some very importance analysis this weekned.</div>
<div class="" style="color:rgb(0,0,0); font-size:13px; font-family:'times new roman','new york',times,serif; background-color:transparent; font-style:normal">
<br>
</div>
<div class="" style="color:rgb(0,0,0); font-size:13px; font-family:'times new roman','new york',times,serif; background-color:transparent; font-style:normal">
If possible please guide me</div>
<div class="" style="color:rgb(0,0,0); font-size:13px; font-family:'times new roman','new york',times,serif; background-color:transparent; font-style:normal">
<br>
</div>
<div class="" style="color:rgb(0,0,0); font-size:13px; font-family:'times new roman','new york',times,serif; background-color:transparent; font-style:normal">
Regards</div>
<div class="" style="color:rgb(0,0,0); font-size:13px; font-family:'times new roman','new york',times,serif; background-color:transparent; font-style:normal">
Azizul</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
mac06:r1i1p1 ahaque$ ncdump -h pr_day_MPI-ESM-MR_rcp85_r1i1p1_20060101-21001231.nc | less</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo; min-height:13px">
<br class="" style="">
</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:experiment_id = "rcp85" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:source = "MPI-ESM-MR 2011; URL: <a href="http://svn.zmaw.de/svn/cosmos/branches/releases/mpi-esm-cmip5/src/mod">http://svn.zmaw.de/svn/cosmos/branches/releases/mpi-esm-cmip5/src/mod</a>; atmosphere: ECHAM6 (REV: 4936), T63L47; land: JSBACH (REV: 4936); ocean: MPIOM (REV: 4936), GR15L40; sea ice: 4936; marine bgc: HAMOCC (REV:
4936);" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:model_id = "MPI-ESM-MR" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:forcing = "GHG,Oz,SD,Sl,Vl,LU" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:parent_experiment_id = "historical" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:parent_experiment_rip = "r1i1p1" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:branch_time = 56978. ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:contact = "<a href="mailto:cmip5-mpi-esm@dkrz.de">cmip5-mpi-esm@dkrz.de</a>" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:history = "Sat Apr 19 10:33:27 2014: ncks -D 3 --fl_fmt=netcdf4_classic -L 5 --overwrite pr_day_MPI-ESM-MR_rcp85_r1i1p1_20060101-21001231.tmp.nc /Projects/CMIP5A//Daily/rcp85/MPI-ESM-MR//r1i1p1//pr_day_MPI-ESM-MR_rcp85_r1i1p1_20060101-21001231.nc\n",</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
"Sat Apr 19 10:32:01 2014: ncrcat -D 3 --overwrite pr_day_MPI-ESM-MR_rcp85_r1i1p1_20060101-20091231.nc pr_day_MPI-ESM-MR_rcp85_r1i1p1_20100101-20191231.nc pr_day_MPI-ESM-MR_rcp85_r1i1p1_20200101-20291231.nc pr_day_MPI-ESM-MR_rcp85_r1i1p1_20300101-20391231.nc
pr_day_MPI-ESM-MR_rcp85_r1i1p1_20400101-20491231.nc pr_day_MPI-ESM-MR_rcp85_r1i1p1_20500101-20591231.nc pr_day_MPI-ESM-MR_rcp85_r1i1p1_20600101-20691231.nc pr_day_MPI-ESM-MR_rcp85_r1i1p1_20700101-20791231.nc pr_day_MPI-ESM-MR_rcp85_r1i1p1_20800101-20891231.nc
pr_day_MPI-ESM-MR_rcp85_r1i1p1_20900101-21001231.nc pr_day_MPI-ESM-MR_rcp85_r1i1p1_20060101-21001231.tmp.nc\n",</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
"Model raw output postprocessing with modelling environment (IMDI) at DKRZ: URL: <a href="http://svn-mad.zmaw.de/svn/mad/Model/IMDI/trunk">http://svn-mad.zmaw.de/svn/mad/Model/IMDI/trunk</a>, REV: 3998 2011-11-14T17:28:10Z CMOR rewrote data to comply with CF standards and CMIP5 requirements." ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:references = "ECHAM6: n/a; JSBACH: Raddatz et al., 2007. Will the tropical land biosphere dominate the climate-carbon cycle feedback during the twenty first century? Climate Dynamics, 29, 565-574, doi 10.1007/s00382-007-0247-8; MPIOM: Marsland
et al., 2003. The Max-Planck-Institute global ocean/sea ice model with orthogonal curvilinear coordinates. Ocean Modelling, 5, 91-127; HAMOCC: Technical Documentation, <a href="http://www.mpimet.mpg.de/fileadmin/models/MPIOM/HAMOCC5.1_TECHNICAL_REPORT.pdf">http://www.mpimet.mpg.de/fileadmin/models/MPIOM/HAMOCC5.1_TECHNICAL_REPORT.pdf</a>;" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:initialization_method = 1 ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:physics_version = 1 ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:tracking_id = "bfd476dc-f2be-4061-9184-6a0e7a55219b" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:product = "output" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:experiment = "RCP8.5" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:frequency = "day" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:creation_date = "2011-11-14T17:28:14Z" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:Conventions = "CF-1.4" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:project_id = "CMIP5" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:table_id = "Table day (27 April 2011) 86d1558d99b6ed1e7a886ab3fd717b58" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:title = "MPI-ESM-MR model output prepared for CMIP5 RCP8.5" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:parent_experiment = "historical" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:modeling_realm = "atmos" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:realization = 1 ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:cmor_version = "2.6.0" ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:nco_openmp_thread_number = 1 ;</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
:NCO = "4.4.0" ;</div>
<div class="" style="background-color:transparent"></div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
}</div>
<div class="" style=""><br class="" style="">
</div>
<div class="qtdSeparateBR"><br>
<br>
</div>
<div class="yahoo_quoted" style="display:block">
<div class="" style="font-family:times new roman,new york,times,serif; font-size:10pt">
<div class="" style="font-family:HelveticaNeue,Helvetica Neue,Helvetica,Arial,Lucida Grande,Sans-Serif; font-size:12pt">
<div dir="ltr" class="" style=""><font class="" style="" face="Arial" size="2">On Saturday, 13 September 2014, 6:36, "<a href="mailto:mamadoulamine.mbaye@ucad.edu.sn">mamadoulamine.mbaye@ucad.edu.sn</a>" <<a href="mailto:mamadoulamine.mbaye@ucad.edu.sn">mamadoulamine.mbaye@ucad.edu.sn</a>> wrote:<br class="" style="">
</font></div>
<br class="" style="">
<br class="" style="">
<div class="" style="">
<div id="yiv3752102309" class="" style=""><style type="text/css" class="" style="">
<!--
#yiv3752102309 #yiv3752102309 --P
{margin-top:0;
margin-bottom:0}
#yiv3752102309 --P
{margin-top:0;
margin-bottom:0}
-->
</style>
<div dir="ltr" class="" style="">
<div class="" style="">Hi Azizul,</div>
<div class="" style="">could you verify if the file is correctly download.</div>
<div class="" style="">You can see also the cdo forum. <a rel="nofollow" shape="rect" id="yiv3752102309lnk920427" target="_blank" href="https://code.zmaw.de/projects/cdo/boards" class="" style="">
https://code.zmaw.de/projects/cdo/boards</a></div>
<div class="" style=""><br class="" style="" clear="none">
</div>
<div class="" style="">Best Regards,</div>
<div class="" style="">Mamadou<br class="" style="" clear="none">
</div>
<div class="" style="color:rgb(33,33,33)">
<hr tabindex="-1" class="" style="display:inline-block; width:98%">
<div dir="ltr" id="yiv3752102309divRplyFwdMsg" class="" style=""><font class="" style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b class="" style="">De :</b> azizul haque <<a href="mailto:haque.azizul320@yahoo.com">haque.azizul320@yahoo.com</a>><br class="" style="" clear="none">
<b class="" style="">Envoyé :</b> samedi 13 septembre 2014 05:18<br class="" style="" clear="none">
<b class="" style="">À :</b> <a href="mailto:mamadoulamine.mbaye@ucad.edu.sn">mamadoulamine.mbaye@ucad.edu.sn</a>; <a href="mailto:ncl-talk@ucar.edu">ncl-talk@ucar.edu</a><br class="" style="" clear="none">
<b class="" style="">Objet :</b> Re: [ncl-talk] Error for cdc create</font>
<div class="" style=""> </div>
</div>
<div class="" id="yiv3752102309yqt57468" style="">
<div class="" style="">
<div class="" style="color:#000; background-color:#fff; font-family:times new roman,new york,times,serif; font-size:10pt">
<div class="" style=""><span class="" style="">Hi Mamadou,</span></div>
<div class="" style="color:rgb(0,0,0); font-size:13px; font-family:'times new roman','new york',times,serif; background-color:transparent; font-style:normal">
<span class="" style="">Thanks. I tried according to your instruction and getting same problem. Earlier I extracted a couple of files using cdo selyear,1980/2000 command and it worked properly. But do not know what happened now. Pls guide me if possible.</span></div>
<div class="" style="color:rgb(0,0,0); font-size:13px; font-family:'times new roman','new york',times,serif; background-color:transparent; font-style:normal">
<span class="" style="">Regards</span></div>
<div class="" style="color:rgb(0,0,0); font-size:13px; font-family:'times new roman','new york',times,serif; background-color:transparent; font-style:normal">
<span class="" style="">Azizul</span></div>
<div class="" style=""><br class="" style="" clear="none">
<br class="" style="" clear="none">
</div>
<div class="" style="display:block">
<div class="" style="font-family:'times new roman','new york',times,serif; font-size:10pt">
<div class="" style="font-family:HelveticaNeue,'Helvetica Neue',Helvetica,Arial,'Lucida Grande',sans-serif; font-size:12pt">
<div dir="ltr" class="" style=""><font class="" style="" face="Arial" size="2">On Saturday, 13 September 2014, 2:54, "<a href="mailto:mamadoulamine.mbaye@ucad.edu.sn">mamadoulamine.mbaye@ucad.edu.sn</a>" <<a href="mailto:mamadoulamine.mbaye@ucad.edu.sn">mamadoulamine.mbaye@ucad.edu.sn</a>> wrote:<br class="" style="" clear="none">
</font></div>
<br class="" style="" clear="none">
<br class="" style="" clear="none">
<div class="" style="">
<div id="yiv3752102309" class="" style="">
<div dir="ltr" class="" style="">
<div class="" style=""><span class="" style="font-size:12pt">Hi Azizul,</span></div>
<div class="" style=""><span class="" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt">You can use cdo seldate,2080-01-01,2100-12-31 pr_day_CNRM-CM5_rcp85_r1i1p1_20060101-21001231.nc pr_day_CNRM-CM5_rcp85_r1i1p1_20800101-21001231.nc<br class="" style="" clear="none">
</span></div>
<div class="" style="">Permission denied: I think you don't have right administrator</div>
<div class="" style="">otherwise the netcdf version of your data is not built with your cdo</div>
<div class="" style="">Hope this helps</div>
<div class="" style="">Regards,</div>
<div class="" style="">Mamadou<br class="" style="" clear="none">
</div>
<div class="" style="color:rgb(33,33,33)">
<hr tabindex="-1" class="" style="display:inline-block; width:98%">
<div dir="ltr" id="yiv3752102309divRplyFwdMsg" class="" style=""><font class="" style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b class="" style="">De :</b> <a href="mailto:ncl-talk-bounces@ucar.edu">ncl-talk-bounces@ucar.edu</a> <<a href="mailto:ncl-talk-bounces@ucar.edu">ncl-talk-bounces@ucar.edu</a>> de la part de azizul haque
<<a href="mailto:haque.azizul320@yahoo.com">haque.azizul320@yahoo.com</a>><br class="" style="" clear="none">
<b class="" style="">Envoyé :</b> vendredi 12 septembre 2014 23:40<br class="" style="" clear="none">
<b class="" style="">À :</b> <a href="mailto:ncl-talk@ucar.edu">ncl-talk@ucar.edu</a><br class="" style="" clear="none">
<b class="" style="">Objet :</b> [ncl-talk] Error for cdc create</font>
<div class="" style=""> </div>
</div>
<div class="" id="yiv3752102309yqt20870" style="">
<div class="" style="">
<div class="" style="color:rgb(0,0,0); background-color:rgb(255,255,255); font-family:'times new roman','new york',times,serif; font-size:10pt">
<div class="" style="">Hi All,</div>
<div class="" style="">I try to extract 2080-2100 precipitation using CDO(<span class="" style="font-family:Menlo; font-size:11px">cdo selyear,2080/2100 pr_day_CNRM-CM5_rcp85_r1i1p1_20060101-21001231.nc pr_day_CNRM-CM5_rcp85_r1i1p1_20800101-21001231.nc)</span><span class="" style="font-size:10pt"> in
the linux environment and getting following error message</span></div>
<div class="" style="">###########<span class="" style="font-family:Menlo; font-size:11px">Error (cdf_create) : pr_day_CNRM-CM5_rcp85_r1i1p1_20800101-21001231.nc: Permission denied</span></div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 0:</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
#000: H5T.c line 1766 in H5Tclose(): not a datatype</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
major: Invalid arguments to routine</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
minor: Inappropriate type</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo; min-height:13px">
<br class="" style="" clear="none">
</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
Error (cdf_close) : NetCDF: HDF error###############</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
Any suggestion is greatly appreciated</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
Regards</div>
<div class="" style="margin-top:0px; margin-bottom:0px; font-size:11px; font-family:Menlo">
Azizul</div>
</div>
</div>
</div>
</div>
</div>
</div>
<br class="" style="" clear="none">
<br class="" style="" clear="none">
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<br class="" style="">
<br class="" style="">
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div></blockquote><blockquote type="cite"><div><span>_______________________________________________</span><br><span>ncl-talk mailing list</span><br><span>List instructions, subscriber options, unsubscribe:</span><br><span><a href="http://mailman.ucar.edu/mailman/listinfo/ncl-talk">http://mailman.ucar.edu/mailman/listinfo/ncl-talk</a></span><br></div></blockquote></body></html>