<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">thank you Will and apologies for my inefficient search of previous posts.<div class=""><br class=""></div><div class="">Indeed, nc-config gives me version 4.6.2. Interestingly, when I run cdo in the same ncl_stable environment, it indicates that it runs version 4.6.3… </div><div class=""><br class=""></div><div class="">In any case, for now I will not fight with 6.6.2, since 6.5.0 meets my needs. I restored the whole miniconda3 file from my backups and I’m back to 6.5.0 with netcdf 4.6.1 and no warnings. </div><div class=""> </div><div class=""><div class=""><div class="">
<div dir="auto" style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div style="orphans: 2; widows: 2; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Christina </div><div style="orphans: 2; widows: 2; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><br class=""></div></div>
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<div><br class=""><blockquote type="cite" class=""><div class="">On Apr 11, 2019, at 4:30 PM, Will Hobbs <<a href="mailto:will.hobbs@utas.edu.au" class="">will.hobbs@utas.edu.au</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="WordSection1" style="page: WordSection1; caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Christina<o:p class=""></o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">There have been a number of posts about this issue, it seems to be that conda installs an older version of netcdf (4.62.) with this bug, instead of the latest version (4.6.3). You could fix it by somehow installing the latest version of netcdf4 into your conda environment, or installing NCL from binary like back in the good old days.<o:p class=""></o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">An alternative hack – which I in no way advocate or endorse, nor would I ever admit to using myself – is to invoke NCL in the following fashion:<o:p class=""></o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">ncl 2>dev/null …<o:p class=""></o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">You’ll still get NCL error/warning messages<o:p class=""></o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Will<o:p class=""></o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div style="border-style: solid none none; border-top-width: 1pt; border-top-color: rgb(181, 196, 223); padding: 3pt 0cm 0cm;" class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><b class=""><span style="font-size: 12pt;" class="">From:<span class="Apple-converted-space"> </span></span></b><span style="font-size: 12pt;" class="">ncl-install <<a href="mailto:ncl-install-bounces@ucar.edu" class="">ncl-install-bounces@ucar.edu</a>> on behalf of Christina Karamperidou via ncl-install <<a href="mailto:ncl-install@ucar.edu" class="">ncl-install@ucar.edu</a>><br class=""><b class="">Reply-To:<span class="Apple-converted-space"> </span></b>Christina Karamperidou <<a href="mailto:ckaramp@hawaii.edu" class="">ckaramp@hawaii.edu</a>><br class=""><b class="">Date:<span class="Apple-converted-space"> </span></b>Friday, 12 April 2019 at 12:16 PM<br class=""><b class="">To:<span class="Apple-converted-space"> </span></b>"<a href="mailto:ncl-install@ucar.edu" class="">ncl-install@ucar.edu</a>" <<a href="mailto:ncl-install@ucar.edu" class="">ncl-install@ucar.edu</a>><br class=""><b class="">Subject:<span class="Apple-converted-space"> </span></b>[ncl-install] HDF5 and NC4 messages in NCL<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Hello NCL-install <span class="Apple-converted-space"> </span><o:p class=""></o:p></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">I believe this may be an installation issue but I cannot trace it back to its source to make it stop. <o:p class=""></o:p></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">NCL (version 6.6.2) prints a list of messages when I read datasets. <o:p class=""></o:p></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Examples: <o:p class=""></o:p></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div></div><div class=""><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">f5 = addfile ("<a href="http://test.nc/" style="color: purple; text-decoration: underline;" class="">test.nc</a>", "r")<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">NC4_open: path<span class="Apple-converted-space"> </span><a href="http://test.nc/" style="color: purple; text-decoration: underline;" class="">test.nc</a><span class="Apple-converted-space"> </span>mode 4096 params 0<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">HDF5 error messages turned on.<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">nc4_open_file: path<span class="Apple-converted-space"> </span><a href="http://test.nc/" style="color: purple; text-decoration: underline;" class="">test.nc</a><span class="Apple-converted-space"> </span>mode 4096<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">nc4_grp_list_add: name / <o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">nc4_rec_read_metadata: grp-><a href="http://hdr.name/" style="color: purple; text-decoration: underline;" class="">hdr.name</a><span class="Apple-converted-space"> </span>/<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">found dataset lon<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">found dataset lat<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">found dataset lev<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">When I exit NCL (after having read the dataset), I get the following (with many similar lines following): <o:p class=""></o:p></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><br class=""><br class=""><o:p class=""></o:p></div></div><div class=""><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">ncl 1> exit<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">NC4_close: ncid 0x10000<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">nc4_close_hdf5_file: h5->path<span class="Apple-converted-space"> </span><a href="http://test.nc/" style="color: purple; text-decoration: underline;" class="">/test.nc</a><span class="Apple-converted-space"> </span>abort 0<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">nc4_rec_grp_HDF5_del: grp->name /<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">closing HDF5 dataset 360287970189639751<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">closing HDF5 dataset 360287970189639752<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">closing HDF5 dataset 360287970189639753<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">closing HDF5 dataset 360287970189639754<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; background-color: rgb(254, 244, 156);" class=""><span style="font-size: 8.5pt; font-family: Menlo;" class="">closing HDF5 dataset 360287970189639756<o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><br class=""><br class=""><o:p class=""></o:p></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><br class=""><br class=""><o:p class=""></o:p></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Is there a way to mute these warnings/notifications? <o:p class=""></o:p></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">I tried uninstalling and reinstalling HDF5 and NCL via conda, but it didn’t help. <o:p class=""></o:p></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">I do not get these messages outside the ncl_stable environment, where I run NCL version 6.2.1. <o:p class=""></o:p></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><br class=""><br class=""><o:p class=""></o:p></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">thank you,<o:p class=""></o:p></div></div></div></div><div class=""><div class=""><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="font-size: 9pt; font-family: Helvetica;" class="">Christina <o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="font-size: 9pt; font-family: Helvetica;" class=""><o:p class=""> </o:p></span></div></div></div></div></div><p style="caret-color: rgb(0, 0, 0); font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-size: 10pt; line-height: 10pt; font-family: Calibri, sans-serif;" class=""><br class=""><br class="">University of Tasmania Electronic Communications Policy (December, 2014).<span class="Apple-converted-space"> </span><br class="">This email is confidential, and is for the intended recipient only. Access, disclosure, copying, distribution, or reliance on any of it by anyone outside the intended recipient organisation is prohibited and may be a criminal offence. Please delete if obtained in error and email confirmation to the sender. The views expressed in this email are not necessarily the views of the University of Tasmania, unless clearly intended otherwise.</p></div></blockquote></div><br class=""></div></div></body></html>