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<p class="MsoNormal"><span style="font-size:11.0pt">Hi again,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">I think I’ve solved it.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">It was a bit of a cheat, but I just linked my homebrew gcc library into the ncl_stable library.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Seems to be working now.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Thanks<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
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<td nowrap="1"><font style="font-family:calibri;font-size:10pt;color:Black;font-weight:bold;">Dr</font>
<font style="font-family:Calibri;font-size:10pt;color:#000000;font-weight:bold;">
Alison Kohout</font></td>
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<td nowrap="1"><font style="font-family:Calibri Light;font-size:9pt;color:#000000;font-weight:bold;">Hydrodynamics Scientist</font></td>
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</font><font style="font-family:Calibri;font-size:9pt;">+64-3-343-7842</font></font></font></td>
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<td nowrap="1"><font style="font-family:Calibri;font-size:9pt;color:#000000;">National Institute of Water & Atmospheric Research Ltd (NIWA)</font></td>
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<td nowrap="1"><font style="font-family:Calibri;font-size:9pt;color:#000000;font-weight:bold;">Connect with NIWA:
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<td><font style="font-family:Calibri;font-size:7pt;color:#244061;"><font style="font-family:Calibri;font-size:8pt;color:#244061;">To ensure compliance with legal requirements and to maintain cyber security standards, NIWA's IT systems are subject to ongoing
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<p class="MsoNormal"><b><span style="color:black">From: </span></b><span style="color:black">Alison Kohout <Alison.Kohout@niwa.co.nz><br>
<b>Date: </b>Friday, 26 October 2018 at 10:08<br>
<b>To: </b>"ncl-install@ucar.edu" <ncl-install@ucar.edu><br>
<b>Subject: </b>Trouble installing on MacOS 10.14 Mojave<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
</div>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">Hi,</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">I’ve been trying to install ncl from conda on my macOS 10.14, but running into trouble. Originally I tried using clang gcc, but ran into trouble. I then tried the latest gcc on homebrew, still
having trouble.</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">It would be fantastic if you could help me out.</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">THANKS</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">Here are the details:</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">[kohoutal@niwa-36847 ~]$ source activate ncl_stable</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">(ncl_stable) [kohoutal@niwa-36847 ~]$ which ncl</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">/Users/kohoutal/miniconda3/envs/ncl_stable/bin/ncl</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">(ncl_stable) [kohoutal@niwa-36847 ~]$ ncl -V</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> Referenced from: /Users/kohoutal/miniconda3/envs/ncl_stable/lib/libgomp.1.dylib</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> Expected in: /usr/lib/libSystem.B.dylib</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">dyld: Symbol not found: ___emutls_get_address</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> Referenced from: /Users/kohoutal/miniconda3/envs/ncl_stable/lib/libgomp.1.dylib</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> Expected in: /usr/lib/libSystem.B.dylib</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">Abort trap: 6</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">(ncl_stable) [kohoutal@niwa-36847 ~]$ otool -L `which ncl`</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">/Users/kohoutal/miniconda3/envs/ncl_stable/bin/ncl:</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 307.5.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libnetcdf.13.dylib (compatibility version 13.0.0, current version 13.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libcurl.4.dylib (compatibility version 10.0.0, current version 10.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libhdf5_hl.100.dylib (compatibility version 102.0.0, current version 102.1.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libhdf5.103.dylib (compatibility version 104.0.0, current version 104.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libmfhdf.0.dylib (compatibility version 1.0.0, current version 1.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libdf.0.dylib (compatibility version 1.0.0, current version 1.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libjpeg.9.dylib (compatibility version 13.0.0, current version 13.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libz.1.dylib (compatibility version 1.0.0, current version 1.2.11)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libgdal.20.dylib (compatibility version 24.0.0, current version 24.3.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libproj.12.dylib (compatibility version 13.0.0, current version 13.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libudunits2.0.dylib (compatibility version 2.0.0, current version 2.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libexpat.1.dylib (compatibility version 8.0.0, current version 8.7.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libjasper.1.dylib (compatibility version 2.0.0, current version 2.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libpng16.16.dylib (compatibility version 51.0.0, current version 51.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> /opt/X11/lib/libcairo.2.dylib (compatibility version 11403.0.0, current version 11403.6.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> /opt/X11/lib/libfontconfig.1.dylib (compatibility version 11.0.0, current version 11.2.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> /opt/X11/lib/libpixman-1.0.dylib (compatibility version 35.0.0, current version 35.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> /opt/X11/lib/libfreetype.6.dylib (compatibility version 19.0.0, current version 19.6.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> /opt/X11/lib/libXrender.1.dylib (compatibility version 5.0.0, current version 5.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libiconv.2.dylib (compatibility version 9.0.0, current version 9.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libbz2.dylib (compatibility version 0.0.0, current version 0.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libgsl.19.dylib (compatibility version 22.0.0, current version 22.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libopenblas.dylib (compatibility version 0.0.0, current version 0.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> /opt/X11/lib/libXpm.4.dylib (compatibility version 16.0.0, current version 16.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> /opt/X11/lib/libX11.6.dylib (compatibility version 10.0.0, current version 10.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> /opt/X11/lib/libXext.6.dylib (compatibility version 11.0.0, current version 11.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libgfortran.3.dylib (compatibility version 4.0.0, current version 4.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libquadmath.0.dylib (compatibility version 1.0.0, current version 1.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libstdc++.6.dylib (compatibility version 7.0.0, current version 7.19.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libgomp.1.dylib (compatibility version 2.0.0, current version 2.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1238.60.2)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> @rpath/libgcc_s.1.dylib (compatibility version 1.0.0, current version 1.0.0)</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">(ncl_stable) [kohoutal@niwa-36847 ~]$ env | grep NCARG</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">NCARG_ROOT=/Users/kohoutal/miniconda3/envs/ncl_stable</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">(ncl_stable) [kohoutal@niwa-36847 ~]$ which gcc</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">/usr/local/bin/gcc</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">(ncl_stable) [kohoutal@niwa-36847 ~]$ which gfortran</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">/usr/local/bin/gfortran</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">(ncl_stable) [kohoutal@niwa-36847 ~]$ gfortran --version</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">GNU Fortran (Homebrew GCC 8.2.0) 8.2.0</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">Copyright (C) 2018 Free Software Foundation, Inc.</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">This is free software; see the source for copying conditions. There is NO</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">(ncl_stable) [kohoutal@niwa-36847 ~]$ gcc --version</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">gcc (Homebrew GCC 8.2.0) 8.2.0</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">Copyright (C) 2018 Free Software Foundation, Inc.</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">This is free software; see the source for copying conditions. There is NO</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt">warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.</span><o:p></o:p></p>
<p class="MsoNormal"><span lang="EN-AU" style="font-size:11.0pt"> </span><o:p></o:p></p>
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