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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Hi Mary,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks for this – upgrading Cygwin has solved the problem.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">For info, if anyone else reading this has the same issue, you must delete the duplicate binaries from v6.3.0 to make sure that the v6.4.0 ones are used.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Many thanks for your help,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Helen<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> Mary Haley [mailto:haley@ucar.edu]
<br>
<b>Sent:</b> 30 May 2017 20:18<br>
<b>To:</b> Helen Macintyre<br>
<b>Cc:</b> ncl-install@ucar.edu<br>
<b>Subject:</b> Re: [ncl-install] v6.4.0 with non-OPeNDAP<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hi Helen,<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Usually when you type "ncl" and nothing happens, this is because there's a compatibility issue between the NCL binary you're running, and the system you are on.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Has it been awhile since you updated Cygwin? NCL V6.4.0 was built under whatever the latest version of Cygwin was around January/February 2017. If your Cygwin is older than this, then this could be the source of the problem.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">What I recommend is updating Cygwin.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<ul type="disc">
<li class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt;mso-list:l1 level1 lfo1">
Exit out of your current Cygwin window.<o:p></o:p></li><li class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt;mso-list:l1 level1 lfo1">
Go to <a href="http://x.cygwin.com/">http://x.cygwin.com/</a><o:p></o:p></li><li class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt;mso-list:l1 level1 lfo1">
Download the setup-x86.exe file (NOT setup-x86_64.exe)<o:p></o:p></li><li class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt;mso-list:l1 level1 lfo1">
Run setup-x86.exe. <br>
<br>
Hopefully you should be able to accept all the defaults, UNLESS when you originally installed Cygwin, you didn't use the defaults. In that case, you'll want to use the same answers that you used before.<br>
<br>
As you run this program, you may notice that it detects some of your packages are out of date, and it will indicate what new version it's going to install. This is what you want.<o:p></o:p></li><li class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;mso-list:l1 level1 lfo1">
Once you finish answering all the setup questions, it should then start updating all the software that it found was out of date.<o:p></o:p></li></ul>
<ul type="disc">
<li class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;mso-list:l0 level1 lfo2">
Once this finishes, try running cygwin like you normally do, and trying your NCL command again.<o:p></o:p></li></ul>
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<p class="MsoNormal">--Mary<o:p></o:p></p>
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<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Tue, May 30, 2017 at 10:40 AM, Helen Macintyre <<a href="mailto:Helen.Macintyre@phe.gov.uk" target="_blank">Helen.Macintyre@phe.gov.uk</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Hi Mary,</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks for the explanation, that’s helpful.</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">I have one other issue. I’ve unpacked the code from the tarball into my $NCAR_ROOT, but I’m still
finding that when I type ncl at the prompt, it goes to version 6.3.0. On closer inspection the new (6.4.0) binaries all have the *.exe extension. So I now have an ‘ncl’ and an ‘ncl.exe’ in my $NCAR_ROOT/bin/ (one from each version I assume).</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">I tried deleting the ‘ncl’, and running ncl.exe, but nothing happened. I also tried removing all
the old binaries and only having the new ones, but again nothing happens when I type ncl at the command prompt. It doesn’t throw an error either which is odd – nothing at all happens.</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Am I missing a step? I have $NCAR_ROOT/bin added to my $PATH, so it should be able to see it.</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Best,</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Helen</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> Mary
Haley [mailto:<a href="mailto:haley@ucar.edu" target="_blank">haley@ucar.edu</a>]
<br>
<b>Sent:</b> 30 May 2017 17:06<br>
<b>To:</b> Helen Macintyre<br>
<b>Cc:</b> <a href="mailto:ncl-install@ucar.edu" target="_blank">ncl-install@ucar.edu</a><br>
<b>Subject:</b> Re: [ncl-install] v6.4.0 with non-OPeNDAP</span><o:p></o:p></p>
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<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Hi Helen,<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">We don't have a non-OPeNDAP version of NCL for Cygwin, and it won't hurt if you use the OPeNDAP version. With NCL version 6.3.0, we didn't provide a non-opendap version either,
so you are likely using an OPeNDAP-enabled version already.<o:p></o:p></p>
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<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">The OPeNDAP-enabled version of NCL allows you to use "addfile" to access data files on the web that are served by OPeNDAP servers. The reason we provide different versions of NCL
is because the OPeNDAP version requires additional software be installed on your system, which some users find to be a pain. <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Since you are likely already running an OPeNDAP version of NCL on Cygwin, this means you already have the additional software needed, so you should be good to go.<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">--Mary<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">On Tue, May 30, 2017 at 5:14 AM, Helen Macintyre <<a href="mailto:Helen.Macintyre@phe.gov.uk" target="_blank">Helen.Macintyre@phe.gov.uk</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Hi,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I’m upgrading from 6.3.0 to 6.4.0, but I can’t find the precompiled binaries for Cygwin at the non-OPeNDAP-enabled page here:
<a href="https://www.earthsystemgrid.org/dataset/ncl.640.nodap/file.html" target="_blank">
https://www.earthsystemgrid.org/dataset/ncl.640.nodap/file.html</a><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Or in the direct link under downloads here (gives 404 error):
<a href="https://www.ncl.ucar.edu/Download/windows_cygwin.shtml" target="_blank">
https://www.ncl.ucar.edu/Download/windows_cygwin.shtml</a><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I honestly can’t remember which one (opendap or non-opendap) I have installed already – what’s the difference? Does it matter if I use opendap??<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Best,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Helen<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b>Dr Helen Macintyre</b><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Senior Environmental Scientist (Modeller)<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Chemical and Environmental Effects<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Centre for Radiation, Chemical and Environmental Hazards<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Public Health England<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Chilton, Didcot<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">OX11 0RQ<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Email:
<a href="mailto:Helen.Macintyre@phe.gov.uk" target="_blank">Helen.Macintyre@phe.gov.uk</a><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<span lang="EN-US" style="font-size:10.0pt;font-family:"Arial","sans-serif""><a href="http://www.gov.uk/phe" target="_blank">www.gov.uk/phe</a> Follow us on
<a href="https://twitter.com/PHE_uk" target="_blank">Twitter<span style="font-size:12.0pt"> @PHE_uk</span></a></span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-size:10.0pt;color:black">Protecting and improving the nation’s health</span></b><o:p></o:p></p>
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The information contained in the EMail and any attachments is confidential and intended solely and for the attention and use of the named addressee(s). It may not be disclosed to any other person without the express authority of Public Health England, or the intended recipient, or both. If you are not the intended recipient, you must not disclose, copy, distribute or retain this message or any part of it. This footnote also confirms that this EMail has been swept for computer viruses by Symantec.Cloud, but please re-sweep any attachments before opening or saving. http://www.gov.uk/PHE<BR>
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