<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Mary,<div class=""><br class=""></div><div class="">I tried everything you did here and now I am getting a different error for a different symbol not found. </div><div class=""><br class=""></div><div class="">This one is </div><div class=""><span style="font-family: Menlo;" class="">dyld: Symbol not found: __ZTTNSt7__cxx1118basic_stringstreamIcSt11char_traitsIcESaIcEEE</span></div><div class=""><br class=""></div><div class="">Andrea<br class=""><div class=""><div><blockquote type="cite" class=""><div class="">On Mar 19, 2017, at 11:43 AM, Mary Haley <<a href="mailto:haley@ucar.edu" class="">haley@ucar.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div class="gmail_default" style="font-size:small">Hi everybody,</div><div class="gmail_default" style="font-size:small"><br class=""></div><div class="gmail_default" style="font-size:small">This email is for Will and Andrea and everybody else who is running into the "_<span class="" id=":293.1" tabindex="-1">ZdaPvm</span> missing symbol" issue with the <span class="" id=":293.2" tabindex="-1">NCL</span> 6.4.0 <span class="" id=":293.3" tabindex="-1">MacOS</span> 10.11 (El <span class="" id=":293.4" tabindex="-1">Capitan</span>) binary</div><div class="gmail_default" style="font-size:small"><br class=""></div><div class="gmail_default" style="font-size:small">This is due to me having built <span class="" id=":293.5" tabindex="-1">NCL</span> with the 6.1.0 GNU compilers, and you likely only have GNU 5.4.0 or earlier on your systems. Thanks to Dave Allured and Will and others who helped me debug this issue!</div><div class="gmail_default" style="font-size:small"><br class=""></div><div class="gmail_default" style="font-size:small">After some fisticuffs with my El <span class="" id=":293.6" tabindex="-1">Capitan</span> system, I was able to download and use <span class="" id=":293.7" tabindex="-1">MacPorts</span> GNU 5.4.0 to rebuild <span class="" id=":293.8" tabindex="-1">NCL</span>. I verified that there are no references to _<span class="" id=":293.9" tabindex="-1">ZdaPvm</span> in the binary.</div><div class="gmail_default" style="font-size:small"><br class=""></div><div class="gmail_default" style="font-size:small">Please download and try one of these binaries if you have <span class="" id=":293.10" tabindex="-1">MacOS</span> 10.11 (they can also be used on <span class="" id=":293.11" tabindex="-1">MacOS</span> 10.12):</div><div class="gmail_default" style="font-size:small"><br class=""></div><div class="gmail_default" style="font-size:small"><b class="">Non-<span class="" id=":293.12" tabindex="-1">OPeNDAP</span> enabled binary:</b><br class=""></div><div class="gmail_default" style="font-size:small"><p class="gmail-p1"><span class="gmail-s1"><a href="https://www.earthsystemgrid.org/dataset/ncl.640.nodap/file.html" class="">https://www.<span class="" id=":293.13" tabindex="-1">earthsystemgrid</span>.org/<span class="" id=":293.14" tabindex="-1">dataset</span>/<span class="" id=":293.15" tabindex="-1">ncl</span>.640.<span class="" id=":293.16" tabindex="-1">nodap</span>/file.html</a></span></p><p class="gmail-p1"><span class="gmail-s1">Click on <a href="https://www.earthsystemgrid.org/download/fileDownload.html?logicalFileId=48c0481e-0cc9-11e7-9b99-00c0f03d5b7c" class="">"<span class="" id=":293.17" tabindex="-1">ncl</span>_<span class="" id=":293.18" tabindex="-1">ncarg</span>-6.4.0-<span class="" id=":293.19" tabindex="-1">MacOS</span>_10.11_64bit_<span class="" id=":293.20" tabindex="-1">nodap</span>_gnu540.tar.<span class="" id=":293.21" tabindex="-1">gz</span></a>"</span></p></div><div class="gmail_default"><a href="https://www/" class="">https://www</a>.<span class="" id=":293.22" tabindex="-1">earthsystemgrid</span>.org/download/<span class="" id=":293.23" tabindex="-1">fileDownload</span>.html?<span class="" id=":293.24" tabindex="-1">logicalFileId</span>=48c0481e-0cc9-11e7-9b99-00c0f03d5b7c<br class=""></div><div class="gmail_default"><br class=""></div><div class="gmail_default"><div class="gmail_default"><p class="gmail-p1"><span class="gmail-s1"><b class=""><span class="" id=":293.25" tabindex="-1">OPeNDAP</span> enabled binary:</b></span></p><div class="gmail_default"><div class="gmail_default"><p class="gmail-p1"><a href="https://www.earthsystemgrid.org/dataset/ncl.640.dap/file.html" class="">https://www.<span class="" id=":293.26" tabindex="-1">earthsystemgrid</span>.org/<span class="" id=":293.27" tabindex="-1">dataset</span>/<span class="" id=":293.28" tabindex="-1">ncl</span>.640.<span class="" id=":293.29" tabindex="-1">dap</span>/file.html</a></p></div></div><p class="gmail-p1"><span class="gmail-s1">Click on "<a href="https://www.earthsystemgrid.org/download/fileDownload.html?logicalFileId=d82e7332-0cc6-11e7-9b99-00c0f03d5b7c" class=""><span class="" id=":293.30" tabindex="-1">ncl</span>_<span class="" id=":293.31" tabindex="-1">ncarg</span>-6.4.0-<span class="" id=":293.32" tabindex="-1">MacOS</span>_10.11_64bit_gnu540.tar.<span class="" id=":293.33" tabindex="-1">gz</span></a>"<br class=""></span><br class=""></p><p class="gmail-p1">I would appreciate hearing from anybody who is able to successfully use these binaries, especially from folks who ran into the "_<span class="" id=":293.34" tabindex="-1">ZdaPvm</span>" issue, so I know if I can resolve this.</p><p class="gmail-p1">Thanks,</p><p class="gmail-p1">--Mary</p><p class="gmail-p1"><br class=""></p></div></div></div><div class="gmail_extra"><br class=""><div class="gmail_quote">On Thu, Mar 16, 2017 at 4:22 PM, Will Hobbs <span dir="ltr" class=""><<a href="mailto:will.hobbs@utas.edu.au" target="_blank" class="">will.hobbs@utas.edu.au</a>></span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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<div class="m_3398179721102472985WordSection1"><p class="MsoNormal"><span style="font-size:11.0pt;font-family:Calibri" class="">Andrea<u class=""></u><u class=""></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:Calibri" class=""><u class=""></u> <u class=""></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:Calibri" class="">I already responded to Mary; I updated al my Macports stuff but it hasn’t helped.<u class=""></u><u class=""></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:Calibri" class=""><u class=""></u> <u class=""></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:Calibri" class="">Will<u class=""></u><u class=""></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:Calibri" class=""><u class=""></u> <u class=""></u></span></p>
<div style="border:none;border-top:solid #b5c4df 1.0pt;padding:3.0pt 0cm 0cm 0cm" class=""><p class="MsoNormal"><b class=""><span style="font-family: Calibri;" class="">From: </span>
</b><span style="font-family: Calibri;" class=""><<a href="mailto:ncl-install-bounces@ucar.edu" target="_blank" class="">ncl-install-bounces@ucar.edu</a>> on behalf of Mary Haley <<a href="mailto:haley@ucar.edu" target="_blank" class="">haley@ucar.edu</a>><br class="">
<b class="">Date: </b>Friday, 17 March 2017 at 6:36 AM<br class="">
<b class="">To: </b>Andrea Jenney <<a href="mailto:andrea@atmos.colostate.edu" target="_blank" class="">andrea@atmos.colostate.edu</a>><br class="">
<b class="">Cc: </b>"<a href="mailto:ncl-install@ucar.edu" target="_blank" class="">ncl-install@ucar.edu</a>" <<a href="mailto:ncl-install@ucar.edu" target="_blank" class="">ncl-install@ucar.edu</a>><br class="">
<b class="">Subject: </b>Re: [ncl-install] Trouble with NCL 6.4.0 (symbol not found _ZdaPvm)<u class=""></u><u class=""></u></span></p>
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<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
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<div class=""><p class="MsoNormal">Andrea,<u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
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<div class=""><p class="MsoNormal">You are the third person to report this problem. The first person said that what worked for him was to upgrade his MacPort installation. I'm waiting to hear back from the second person as to whether this solution works for him as well.<u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
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<div class=""><p class="MsoNormal">I think the issue is that we used the HPC GNU compilers to build NCL, and if you have the MacPort version of the compilers, then this missing symbol shows up if your MacPorts is old.<u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
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<div class=""><p class="MsoNormal">Have you updated MacPorts since upgrading to Sierra?<u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
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<div class=""><p class="MsoNormal">The other possible solution is to download the HPC version of the GNU compilers, which will get installed to /usr/local and hence won't overwrite your MacPorts version that's in /opt/local. Follow this link for more details:<u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
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<div class=""><p class="MsoNormal"><a href="http://www.ncl.ucar.edu/Download/macosx.shtml#InstallCompilers" target="_blank" class="">http://www.ncl.ucar.edu/<wbr class="">Download/macosx.shtml#<wbr class="">InstallCompilers</a><u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
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<div class=""><p class="MsoNormal">If you find the solution, can you let me know so I can make sure other users are aware of it?<u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal"><br class="">
Thanks,<u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
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<div class=""><p class="MsoNormal">--Mary<u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
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<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
<div class=""><p class="MsoNormal">On Thu, Mar 16, 2017 at 11:03 AM, Andrea Jenney <<a href="mailto:andrea@atmos.colostate.edu" target="_blank" class="">andrea@atmos.colostate.edu</a>> wrote:<u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal">Hi ncl-install, <u class=""></u><u class=""></u></p>
<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
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<div class=""><p class="MsoNormal">I have been trying to update to the latest release of NCL (6.4.0) and I have been encountering this error message when I try to run it:<u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
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<div class=""><p class="MsoNormal"><span style="font-family:Menlo" class="">dyld: Symbol not found: __ZdaPvm<br class="">
Referenced from: /usr/local/bin/ncl<br class="">
Expected in: /usr/lib/libstdc++.6.dylib<br class="">
in /usr/local/bin/ncl<br class="">
Abort</span><u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
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<div class=""><p class="MsoNormal">I have tried updating to the newest operating system (Mac OS 10.12.3-Sierra), updating gfortran, and reinstalling the X11 libraries as well as updating to the newest Xquartz. What seems to be the problem?<u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
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<div class=""><p class="MsoNormal">Thank you!<u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal"><u class=""></u> <u class=""></u></p>
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<div class=""><p class="MsoNormal">Andrea<u class=""></u><u class=""></u></p>
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<div class=""><p class="MsoNormal"><span style="background-color: white; background-position: initial initial; background-repeat: initial initial;" class="">---</span><span style="" class=""><u class=""></u><u class=""></u></span></p>
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<div class=""><p class="MsoNormal"><span style="background-color: white; background-position: initial initial; background-repeat: initial initial;" class="">Andrea Jenney</span><span style="" class=""><br class="">
<span style="background:white" class="">Graduate Research Assistant | Randall Group</span><u class=""></u><u class=""></u></span></p>
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<div class=""><p class="MsoNormal"><span style="background-color: white; background-position: initial initial; background-repeat: initial initial;" class="">Colorado State University | Department of Atmospheric Science </span><span style="" class=""><u class=""></u><u class=""></u></span></p>
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<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><span style="background-color: rgb(255, 255, 255);" class="">---</span></div><div class=""><span style="background-color: rgb(255, 255, 255);" class="">Andrea Jenney</span><br class=""><span style="background-color: rgb(255, 255, 255);" class="">Graduate Research Assistant | Randall Group</span></div><div class=""><span style="background-color: rgb(255, 255, 255);" class="">Colorado State University | Department of Atmospheric Science </span></div><div class=""><br class=""></div></div><br class="Apple-interchange-newline"><br class="Apple-interchange-newline">
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