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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:Calibri">Hi Mary<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:Calibri"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:Calibri">I’ve installed the revised binary and it seems to work just fine.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:Calibri"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:Calibri">Thanks for resolving this!<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:Calibri"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:Calibri">Will<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:Calibri"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-family:Calibri;color:black">From: </span>
</b><span style="font-family:Calibri;color:black">Mary Haley <haley@ucar.edu><br>
<b>Date: </b>Monday, 20 March 2017 at 4:43 AM<br>
<b>To: </b>"ncl-install@ucar.edu" <ncl-install@ucar.edu><br>
<b>Cc: </b>Andrea Jenney <andrea@atmos.colostate.edu>, Will Hobbs <will.hobbs@utas.edu.au><br>
<b>Subject: </b>Re: [ncl-install] Trouble with NCL 6.4.0 (symbol not found _ZdaPvm)<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hi everybody,<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">This email is for Will and Andrea and everybody else who is running into the "_ZdaPvm missing symbol" issue with the NCL 6.4.0 MacOS 10.11 (El Capitan) binary<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">This is due to me having built NCL with the 6.1.0 GNU compilers, and you likely only have GNU 5.4.0 or earlier on your systems. Thanks to Dave Allured and Will and others who helped me debug this issue!<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">After some fisticuffs with my El Capitan system, I was able to download and use MacPorts GNU 5.4.0 to rebuild NCL. I verified that there are no references to _ZdaPvm in the binary.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Please download and try one of these binaries if you have MacOS 10.11 (they can also be used on MacOS 10.12):<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><b>Non-OPeNDAP enabled binary:</b><o:p></o:p></p>
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<p class="gmail-p1"><span class="gmail-s1"><a href="https://www.earthsystemgrid.org/dataset/ncl.640.nodap/file.html">https://www.earthsystemgrid.org/dataset/ncl.640.nodap/file.html</a></span><o:p></o:p></p>
<p class="gmail-p1"><span class="gmail-s1">Click on <a href="https://www.earthsystemgrid.org/download/fileDownload.html?logicalFileId=48c0481e-0cc9-11e7-9b99-00c0f03d5b7c">
"ncl_ncarg-6.4.0-MacOS_10.11_64bit_nodap_gnu540.tar.gz</a>"</span><o:p></o:p></p>
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<p class="MsoNormal"><a href="https://www">https://www</a>.earthsystemgrid.org/download/fileDownload.html?logicalFileId=48c0481e-0cc9-11e7-9b99-00c0f03d5b7c<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="gmail-p1"><span class="gmail-s1"><b>OPeNDAP enabled binary:</b></span><o:p></o:p></p>
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<p class="gmail-p1"><a href="https://www.earthsystemgrid.org/dataset/ncl.640.dap/file.html">https://www.earthsystemgrid.org/dataset/ncl.640.dap/file.html</a><o:p></o:p></p>
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<p class="gmail-p1" style="margin-bottom:12.0pt"><span class="gmail-s1">Click on "<a href="https://www.earthsystemgrid.org/download/fileDownload.html?logicalFileId=d82e7332-0cc6-11e7-9b99-00c0f03d5b7c">ncl_ncarg-6.4.0-MacOS_10.11_64bit_gnu540.tar.gz</a>"</span><o:p></o:p></p>
<p class="gmail-p1">I would appreciate hearing from anybody who is able to successfully use these binaries, especially from folks who ran into the "_ZdaPvm" issue, so I know if I can resolve this.<o:p></o:p></p>
<p class="gmail-p1">Thanks,<o:p></o:p></p>
<p class="gmail-p1">--Mary<o:p></o:p></p>
<p class="gmail-p1"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Thu, Mar 16, 2017 at 4:22 PM, Will Hobbs <<a href="mailto:will.hobbs@utas.edu.au" target="_blank">will.hobbs@utas.edu.au</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:Calibri">Andrea</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:Calibri"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:Calibri">I already responded to Mary; I updated al my Macports stuff but it hasn’t helped.</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:Calibri"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:Calibri">Will</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:Calibri"> </span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-family:Calibri;color:black">From:
</span></b><span style="font-family:Calibri;color:black"><<a href="mailto:ncl-install-bounces@ucar.edu" target="_blank">ncl-install-bounces@ucar.edu</a>> on behalf of Mary Haley <<a href="mailto:haley@ucar.edu" target="_blank">haley@ucar.edu</a>><br>
<b>Date: </b>Friday, 17 March 2017 at 6:36 AM<br>
<b>To: </b>Andrea Jenney <<a href="mailto:andrea@atmos.colostate.edu" target="_blank">andrea@atmos.colostate.edu</a>><br>
<b>Cc: </b>"<a href="mailto:ncl-install@ucar.edu" target="_blank">ncl-install@ucar.edu</a>" <<a href="mailto:ncl-install@ucar.edu" target="_blank">ncl-install@ucar.edu</a>><br>
<b>Subject: </b>Re: [ncl-install] Trouble with NCL 6.4.0 (symbol not found _ZdaPvm)</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Andrea,<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">You are the third person to report this problem. The first person said that what worked for him was to upgrade his MacPort installation. I'm waiting to hear back from the second
person as to whether this solution works for him as well.<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I think the issue is that we used the HPC GNU compilers to build NCL, and if you have the MacPort version of the compilers, then this missing symbol shows up if your MacPorts is
old.<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Have you updated MacPorts since upgrading to Sierra?<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">The other possible solution is to download the HPC version of the GNU compilers, which will get installed to /usr/local and hence won't overwrite your MacPorts version that's in
/opt/local. Follow this link for more details:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><a href="http://www.ncl.ucar.edu/Download/macosx.shtml#InstallCompilers" target="_blank">http://www.ncl.ucar.edu/Download/macosx.shtml#InstallCompilers</a><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">If you find the solution, can you let me know so I can make sure other users are aware of it?<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><br>
Thanks,<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">--Mary<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">On Thu, Mar 16, 2017 at 11:03 AM, Andrea Jenney <<a href="mailto:andrea@atmos.colostate.edu" target="_blank">andrea@atmos.colostate.edu</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Hi ncl-install,
<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I have been trying to update to the latest release of NCL (6.4.0) and I have been encountering this error message when I try to run it:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:Menlo">dyld: Symbol not found: __ZdaPvm<br>
Referenced from: /usr/local/bin/ncl<br>
Expected in: /usr/lib/libstdc++.6.dylib<br>
in /usr/local/bin/ncl<br>
Abort</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I have tried updating to the newest operating system (Mac OS 10.12.3-Sierra), updating gfortran, and reinstalling the X11 libraries as well as updating to the newest Xquartz. What
seems to be the problem?<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Thank you!<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Andrea<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black;background:white">---</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black;background:white">Andrea Jenney</span><span style="color:black"><br>
<span style="background:white">Graduate Research Assistant | Randall Group</span></span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black;background:white">Colorado State University | Department of Atmospheric Science </span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black"> </span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"><br>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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