<html>
<head>
<meta content="text/html; charset=utf-8" http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
Thanks Mary,<br>
I installed gcc5 using macports. I made soft links to /usr/local/lib
and that has fixed the problem:<br>
$ ls -l /usr/local/lib/libgomp.1.dylib <br>
lrwxr-xr-x 1 root admin 35 27 Jan 09:39
/usr/local/lib/libgomp.1.dylib ->
/opt/local/lib/gcc5/libgomp.1.dylib<br>
<br>
Cheers,<br>
Jatin<br>
<br>
<br>
<div class="moz-cite-prefix">On 27/01/2016 12:15 AM, Mary Haley
wrote:<br>
</div>
<blockquote
cite="mid:CACNN_C+xCectTXNc+32=rvc-Mvz49njNvn44qdT6YFkPGc4XLw@mail.gmail.com"
type="cite">
<div dir="ltr">
<div class="gmail_default" style="font-size:small">Jatin,</div>
<div class="gmail_default" style="font-size:small"><br>
</div>
<div class="gmail_default" style="font-size:small">You may try
upgrading your gcc/gfortran compilers. My guess is that with
your previous version of MacOS, you installed the gcc/gfortran
compilers from this site:</div>
<div class="gmail_default" style="font-size:small"><br>
</div>
<div class="gmail_default" style=""><a moz-do-not-send="true"
href="http://hpc.sourceforge.net">http://hpc.sourceforge.net</a><br>
</div>
<div class="gmail_default" style=""><br>
</div>
<div class="gmail_default" style="">which puts things in
/usr/local/.</div>
<div class="gmail_default" style=""><br>
</div>
<div class="gmail_default" style="">If you download a new
gcc/gfortran (using the ones for El Capitan) from the above
site, it should also install to /usr/local, and it should give
you the /usr/local/libgomp.1.dylib file.</div>
<div class="gmail_default" style=""><br>
</div>
<div class="gmail_default" style="">--Mary</div>
<div class="gmail_default" style=""><br>
</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Mon, Jan 25, 2016 at 7:05 PM, Jatin
Kala <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:jatin.kala.jk@gmail.com" target="_blank">jatin.kala.jk@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000"> Well, this is
interesting, on a different mac, on which I have been
running ncl for more than 6 months now, grepping for LD
under env, still returns nothing. <br>
<br>
Running:<br>
$ ng4ex gsun01n -clean<br>
<br>
gives me the same error:<br>
<br>
134:~ Jatin$ ng4ex gsun01n -clean<span class=""><br>
dyld: Library not loaded: /usr/local/lib/libgomp.1.dylib<br>
</span> Referenced from:
/Users/Jatin/ncl-6.2.1/bin/ncargpath<span class=""><br>
Reason: image not found<br>
Trace/BPT trap<br>
<br>
</span> This is a mac where i installed ncl without any
issues around June 2015, i updated to OS X El Capitan
around September/October 2015 i think, but did not
re-check my ncl installation....This seems to be related
to updating to OS X El Capitan?<br>
Can anyone else reproduce this issue?<br>
<br>
Cheers,<br>
Jatin
<div>
<div class="h5"><br>
<br>
<br>
<div>On 26/01/2016 9:51 AM, Jatin Kala wrote:<br>
</div>
<blockquote type="cite">
<div dir="ltr">Thanks Mary, see below, grepping for
LD returns nothing.<br>
<div><br>
<br>
134:~ jatinkala$ env | grep NCARG<br>
NCARG_ROOT=/usr/local/ncl-6.3.0<br>
134:~ jatinkala$ env | grep LD<br>
134:~ jatinkala$ which ncl<br>
/usr/local/ncl-6.3.0/bin/ncl<br>
134:~ jatinkala$ otool -L `which ncl`<br>
/usr/local/ncl-6.3.0/bin/ncl:<br>
/opt/X11/lib/libpng15.15.dylib
(compatibility version 34.0.0, current version
34.0.0)<br>
/opt/X11/lib/libcairo.2.dylib (compatibility
version 11203.0.0, current version 11203.16.0)<br>
/opt/X11/lib/libfontconfig.1.dylib
(compatibility version 10.0.0, current version
10.0.0)<br>
/opt/X11/lib/libpixman-1.0.dylib
(compatibility version 33.0.0, current version
33.6.0)<br>
/opt/X11/lib/libfreetype.6.dylib
(compatibility version 18.0.0, current version
18.2.0)<br>
/opt/X11/lib/libXrender.1.dylib
(compatibility version 5.0.0, current version
5.0.0)<br>
/usr/lib/libbz2.1.0.dylib (compatibility
version 1.0.0, current version 1.0.5)<br>
/usr/lib/libiconv.2.dylib (compatibility
version 7.0.0, current version 7.0.0)<br>
/opt/X11/lib/libXpm.4.dylib (compatibility
version 16.0.0, current version 16.0.0)<br>
/opt/X11/lib/libX11.6.dylib (compatibility
version 10.0.0, current version 10.0.0)<br>
/opt/X11/lib/libXext.6.dylib (compatibility
version 11.0.0, current version 11.0.0)<br>
/usr/local/lib/libgfortran.3.dylib
(compatibility version 4.0.0, current version
4.0.0)<br>
/usr/local/lib/libquadmath.0.dylib
(compatibility version 1.0.0, current version
1.0.0)<br>
/usr/local/lib/libstdc++.6.dylib
(compatibility version 7.0.0, current version
7.20.0)<br>
/usr/local/lib/libgomp.1.dylib
(compatibility version 2.0.0, current version
2.0.0)<br>
/usr/lib/libSystem.B.dylib (compatibility
version 1.0.0, current version 1213.0.0)<br>
/usr/local/lib/libgcc_s.1.dylib
(compatibility version 1.0.0, current version
1.0.0)<br>
134:~ jatinkala$ which gcc<br>
/usr/bin/gcc<br>
134:~ jatinkala$ which gfortran<br>
/usr/local/bin/gfortran<br>
134:~ jatinkala$ <br>
<br>
</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Tue, Jan 26, 2016 at
5:46 AM, Mary Haley <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:haley@ucar.edu" target="_blank"><a class="moz-txt-link-abbreviated" href="mailto:haley@ucar.edu">haley@ucar.edu</a></a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0
0 0 .8ex;border-left:1px #ccc
solid;padding-left:1ex">
<div dir="ltr">
<div class="gmail_default"
style="font-size:small">Jatin,</div>
<div class="gmail_default"
style="font-size:small"><br>
</div>
<div class="gmail_default"
style="font-size:small">I think there is
something wrong with your environment. In
general, you shouldn't be needing to
create softlinks or set DYLD_XXXXX.</div>
<div class="gmail_default"
style="font-size:small"><br>
</div>
<div class="gmail_default"
style="font-size:small">What does the
following report on your system:</div>
<div class="gmail_default"
style="font-size:small"><br>
</div>
<div class="gmail_default"
style="font-size:small">env | grep NCARG</div>
<div class="gmail_default"
style="font-size:small">env | grep LD</div>
<div class="gmail_default"
style="font-size:small">which ncl<br>
otool -L `which ncl`</div>
<div class="gmail_default"
style="font-size:small">which gcc</div>
<div class="gmail_default"
style="font-size:small">which gfortran</div>
<div class="gmail_default"
style="font-size:small"><br>
</div>
<div class="gmail_default"
style="font-size:small">--Mary</div>
<div class="gmail_default"
style="font-size:small"><br>
</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">
<div>
<div>On Sun, Jan 24, 2016 at 6:38 PM,
Jatin Kala <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:jatin.kala.jk@gmail.com"
target="_blank"><a class="moz-txt-link-abbreviated" href="mailto:jatin.kala.jk@gmail.com">jatin.kala.jk@gmail.com</a></a>></span>
wrote:<br>
</div>
</div>
<blockquote class="gmail_quote"
style="margin:0 0 0 .8ex;border-left:1px
#ccc solid;padding-left:1ex">
<div>
<div>
<div dir="ltr">
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>Hi,<br>
</div>
I am trying to
install ncl on a
new mac:<br>
</div>
OX X El Capitan,
10.11.3<br>
<br>
</div>
The pre-compiled
binary is:<br>
ncl_ncarg-6.3.0.MacOS_10.10_64bit_nodap_gcc492.tar.gz<br>
<br>
</div>
ncl -v works:<br>
$ ncl -v<br>
Unknown option `-v'<br>
Copyright (C) 1995-2015
- All Rights Reserved<br>
University Corporation
for Atmospheric Research<br>
NCAR Command Language
Version 6.3.0<br>
The use of this
software is governed by
a License Agreement.<br>
See <a
moz-do-not-send="true"
href="http://www.ncl.ucar.edu/" target="_blank"><a class="moz-txt-link-freetext" href="http://www.ncl.ucar.edu/">http://www.ncl.ucar.edu/</a></a>
for more details.<br>
ncl 0> <br>
<br>
<br>
</div>
but the ng4ex command
fails, even though i have
set
DYLD_FALLBACK_LIBRARY_PATH
to gcc5:<br>
<br>
$ echo
$DYLD_FALLBACK_LIBRARY_PATH<br>
/opt/local/lib/gcc5<br>
$ ls -l
/opt/local/lib/gcc5/libgomp.1.dylib
<br>
lrwxr-xr-x 1 root admin
37 22 Jan 17:38
/opt/local/lib/gcc5/libgomp.1.dylib
->
/opt/local/lib/libgcc/libgomp.1.dylib<br>
$ ng4ex gsun01n -clean<br>
dyld: Library not loaded:
/usr/local/lib/libgomp.1.dylib<br>
Referenced from:
/usr/local/ncl-6.3.0/bin/ncargpath<br>
Reason: image not found<br>
Trace/BPT trap<br>
<br>
</div>
contents of .profile:<br>
$ cat ~/.profile <br>
<br>
# MacPorts Installer
addition on
2016-01-22_at_14:17:32:
adding an appropriate PATH
variable for use with
MacPorts.<br>
export
PATH="/opt/local/bin:/opt/local/sbin:$PATH"<br>
# Finished adapting your
PATH environment variable
for use with MacPorts.<br>
export
DYLD_FALLBACK_LIBRARY_PATH=/opt/local/lib/gcc5<br>
export
NCARG_ROOT=/usr/local/ncl-6.3.0<br>
export
PATH=$NCARG_ROOT/bin:$PATH<br>
export
DYLD_LIBRARY_PATH=/usr/local/gfortran/lib/<br>
export CLICOLOR=1<br>
export
LSCOLORS=ExFxCxDxBxegedabagacad<br>
<br>
<br>
</div>
Any ideas?<br>
</div>
Cheers,<br>
</div>
Jatin<br>
<div>
<div><br>
<div>
<div><br>
<br>
<br>
<br>
<br>
<br>
</div>
</div>
</div>
</div>
</div>
<br>
</div>
</div>
_______________________________________________<br>
ncl-install mailing list<br>
List instructions, subscriber options,
unsubscribe:<br>
<a moz-do-not-send="true"
href="http://mailman.ucar.edu/mailman/listinfo/ncl-install"
rel="noreferrer" target="_blank">http://mailman.ucar.edu/mailman/listinfo/ncl-install</a><br>
<br>
</blockquote>
</div>
<br>
</div>
</blockquote>
</div>
<br>
</div>
</blockquote>
<br>
</div>
</div>
<span class="HOEnZb"><font color="#888888">
<pre cols="72">--
Dr. Jatin Kala
Lecturer in Atmospheric Science
Murdoch University,Perth, Western Australia
Tel: <a moz-do-not-send="true" href="tel:%28%2B618%29%209360%206297" value="+61893606297" target="_blank">(+618) 9360 6297</a>
<a moz-do-not-send="true" href="http://www.jatinkala.com/" target="_blank">http://www.jatinkala.com/</a>
</pre>
</font></span></div>
</blockquote>
</div>
<br>
</div>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Dr. Jatin Kala
Lecturer in Atmospheric Science
Murdoch University,Perth, Western Australia
Tel: (+618) 9360 6297
<a class="moz-txt-link-freetext" href="http://www.jatinkala.com/">http://www.jatinkala.com/</a>
</pre>
</body>
</html>