[ncl-install] NCL Conda Install Problem
Justin Richling
justin.richling at gmail.com
Mon Jul 15 18:14:05 MDT 2019
Hi team,
I'm trying to install NCL via Conda
I've tried installing in a conda env similar to your instructions. However,
when I try to check the ncl version I get an error message:
$ ncl -V
dyld: Library not loaded: /opt/X11/lib/libcairo.2.dylib
Referenced from: /Users/chowdahead/miniconda3/envs/ncl_stable/bin/ncl
Reason: image not found
Abort trap: 6
System info:
$ conda list -n ncl_stable
# packages in environment at /Users/chowdahead/miniconda3/envs/ncl_stable:
#
# Name Version Build Channel
boost-cpp 1.70.0 hd59e818_0 conda-forge
bzip2 1.0.8 h01d97ff_0 conda-forge
ca-certificates 2019.6.16 hecc5488_0 conda-forge
cairo 1.16.0 h0ab9d94_1001 conda-forge
cfitsio 3.470 h389770f_1 conda-forge
curl 7.64.1 h22ea746_0 conda-forge
esmf 7.1.0 h3ab5097_1006 conda-forge
expat 2.2.5 h6de7cb9_1003 conda-forge
fontconfig 2.13.1 h1027ab8_1000 conda-forge
freetype 2.10.0 h24853df_0 conda-forge
freexl 1.0.5 h1de35cc_1002 conda-forge
geos 3.7.2 h6de7cb9_1 conda-forge
geotiff 1.5.1 h83de174_2 conda-forge
gettext 0.19.8.1 h46ab8bc_1002 conda-forge
giflib 5.1.7 h01d97ff_1 conda-forge
glib 2.58.3 h9d45998_1002 conda-forge
gsl 2.5 ha2d443c_0 conda-forge
hdf4 4.2.13 hf3c6af0_1002 conda-forge
hdf5 1.10.5 nompi_h0cbb7df_1100 conda-forge
hdfeos2 2.20 h207910d_1000 conda-forge
hdfeos5 5.1.16 h60f75e3_5 conda-forge
icu 58.2 h0a44026_1000 conda-forge
jasper 1.900.1 h636a363_1006 conda-forge
jpeg 9c h1de35cc_1001 conda-forge
json-c 0.13.1 h1de35cc_1001 conda-forge
kealib 1.4.10 h6659575_1005 conda-forge
krb5 1.16.3 hcfa6398_1001 conda-forge
libblas 3.8.0 10_openblas conda-forge
libcblas 3.8.0 10_openblas conda-forge
libcurl 7.64.1 h16faf7d_0 conda-forge
libcxx 8.0.0 4 conda-forge
libcxxabi 8.0.0 4 conda-forge
libdap4 3.19.1 hae55d67_1000 conda-forge
libedit 3.1.20170329 hcfe32e1_1001 conda-forge
libffi 3.2.1 h6de7cb9_1006 conda-forge
libgcc 4.8.5 hdbeacc1_10 conda-forge
libgdal 2.4.2 h8aadb83_2 conda-forge
libgfortran 3.0.1 0 conda-forge
libiconv 1.15 h01d97ff_1005 conda-forge
libkml 1.3.0 hed7d534_1010 conda-forge
libnetcdf 4.6.2 h1a02027_1002 conda-forge
libopenblas 0.3.6 hd44dcd8_4 conda-forge
libpng 1.6.37 h2573ce8_0 conda-forge
libpq 11.4 h756f0eb_1 conda-forge
libspatialite 4.3.0a he369b6e_1029 conda-forge
libssh2 1.8.2 hcdc9a53_2 conda-forge
libtiff 4.0.10 hd08fb8f_1003 conda-forge
libxml2 2.9.9 hd80cff7_1 conda-forge
llvm-openmp 8.0.0 h770b8ee_0 conda-forge
lz4-c 1.8.3 h6de7cb9_1001 conda-forge
mpi 1.0 mpich conda-forge
mpich 3.2.1 ha90c164_1013 conda-forge
ncl 6.6.2 h202f54f_6 conda-forge
ncurses 6.1 h0a44026_1002 conda-forge
netcdf-fortran 4.4.5 hdf19b3b_1001 conda-forge
openblas 0.3.6 hd44dcd8_4 conda-forge
openjpeg 2.3.1 hc1feee7_0 conda-forge
openmp 8.0.0 0 conda-forge
openssl 1.1.1c h01d97ff_0 conda-forge
pcre 8.41 h0a44026_1003 conda-forge
pixman 0.38.0 h01d97ff_1003 conda-forge
poppler 0.67.0 hb974355_6 conda-forge
poppler-data 0.4.9 1 conda-forge
postgresql 11.4 h25afefd_1 conda-forge
proj4 6.1.0 h2cc77ee_2 conda-forge
readline 8.0 hcfe32e1_0 conda-forge
sqlite 3.29.0 hb7d70f7_0 conda-forge
tk 8.6.9 h2573ce8_1002 conda-forge
tzcode 2019a h01d97ff_1002 conda-forge
udunits2 2.2.27.6 h776b7f1_1001 conda-forge
xerces-c 3.2.2 h4db8090_1002 conda-forge
xz 5.2.4 h1de35cc_1001 conda-forge
zlib 1.2.11 h01d97ff_1005 conda-forge
zstd 1.4.0 ha9f0a20_0 conda-forge
$ conda --version
conda 4.7.5
$ which ncl
/Users/chowdahead/miniconda3/envs/ncl_stable/bin/ncl
$ ncl -V
dyld: Library not loaded: /opt/X11/lib/libcairo.2.dylib
Referenced from: /Users/chowdahead/miniconda3/envs/ncl_stable/bin/ncl
Reason: image not found
Abort trap: 6
$ env | grep NCARG
NCARG_ROOT=/Users/chowdahead/miniconda3/envs/ncl_stable
Any insight in to what is the underlying issue?
I've tried running
$ conda update --all -c conda-forge
and checking again but same problem.
I'd be happy to provide any further system info if needed.
Thanks for your time,
Justin
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