[ncl-install] NCL 5.1.0 install problems on x86_64 cluster

[Mark Van Moer]

Hi Mary,

That worked!

Thanks,
Mark
----- Original Message -----
From: "Mary Haley" <haley at ucar.edu>
To: "Mark Van Moer" <mvanmoer at ncsa.illinois.edu>
Cc: ncl-install at ucar.edu
Sent: Wednesday, June 3, 2009 10:52:28 AM GMT -06:00 US/Canada Central
Subject: Re: [ncl-install] NCL 5.1.0 install problems on x86_64 cluster

Hi Mark,

I believe what's happening is that your "icc" compiler needs help
finding some of the fortran libraries.

On our system, "flush_" is in "libifport.a", so you can
try adding "-lifport" to the compile line.

To do this, edit the $NCARG/config/LINUX file, and add "-lifport" to
the end of your "CtoFLibraries" line.

Then, to test quickly, type:

    cd $NCARG/ni/src/ncl
    make me
    make all install

and see if "ncl" builds successfully.

If this is successful, then you can finish your whole build with:

    cd $NCARG
    make all install >&! some_file &

where "some_file" is whatever output file you want.

--Mary


On Wed, 3 Jun 2009, Mark Van Moer wrote:

> Hi, I'm attempting to build NCL 5.1.0 on an Intel x86_64 cluster using Intel compilers.
>
> Everything is getting built except ncl and MakeNcl. The ncl build gives:
>
> icc -ansi -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o ncl Ncl.o io.o NclHLUObj.o scanner.o parser.o MathFuncs.o NclTypedouble.o NclTypefloat.o NclTypeint.o NclTypelogical.o NclTypelong.o NclTypeobj.o NclTypeshort.o NclTypestring.o NclTypebyte.o NclTypechar.o TypeSupport.o NclMultiDValData.o AddFileFormats.o AttSupport.o DataSupport.o FileSupport.o Formats.o GetGrids.o InitData.o Memory.o NclAtt.o NclCCM.o NclCoordVar.o NclData.o NclFile.o NclFileVar.o NclGRIB.o NclHDF.o NclMultiDValnclfileData.o NclNetCdf.o NclOneDValCoordData.o NclType.o NclTypelist.o NclVar.o VarSupport.o ctoiee.o date.o qu2reg3.o rowina3.o scm0.o ncepcode.o AddBuiltIns.o AddHLUObjs.o AddIntrinsics.o Execute.o Machine.o OpsFuncs.o Printtoken.o SrcTree.o Symbol.o Translate.o NclHLUVar.o HLUSupport.o NclMultiDValHLUObjData.o BuiltInSupport.o BuiltInFuncs.o userAddProto.o userAddFuncs.o HLUFunctions.o yywrap.o craybin.o complete.o editline.o sysunix.o ListSupport.o NclList.o NclMultiDVallistData.o fort
 ra
> nio.o  -L../../.././ni/src/lib/nfp -lnfp -L../../.././ni/src/lib/nfpfort -lnfpfort -L../../.././ni/src/lib/hlu -lhlu -L../../.././ncarg2d/src/libncarg -lncarg -L../../.././ncarg2d/src/libncarg_gks -lncarg_gks -L../../.././common/src/libncarg_c -lncarg_c -L../../.././ngmath/src/lib -lngmath -L/usr/apps/vis/ncl/ncl_ncarg-5.1.0/lib -L/usr/local/X11R6/lib64 -L/usr/apps/vis/netcdf/netcdf-4.0/lib -L/usr/apps/hdf/hdf4/v424-noncdf/lib -L/usr/apps/hdf/szip/lib -L/usr/apps/hdf/hdf5/v182/lib -lnetcdf -lhdf5_hl -lhdf5 -lsz  -lmfhdf -ldf -ljpeg -lz -lsz -lpng -lz -L../../.././external/sphere3.1_dp -lsphere3.1_dp -L../../.././external/fftpack5_dp -lfftpack5_dp -L../../.././external/lapack -llapack_ncl -L../../.././external/blas -lblas_ncl -lXpm -lX11 -lXext -lm -lifcore -lm  -ldl
>
> ../../.././ni/src/lib/nfpfort/libnfpfort.a(writematrix.o)(.text+0x4d1): In function `writematrixs_':
> : undefined reference to `flush_'
> ../../.././ni/src/lib/nfpfort/libnfpfort.a(writematrix.o)(.text+0xdd5): In function `writematrixb_':
> : undefined reference to `flush_'
> ../../.././ni/src/lib/nfpfort/libnfpfort.a(writematrix.o)(.text+0x16e5): In function `writematrixd_':
> : undefined reference to `flush_'
> ../../.././ni/src/lib/nfpfort/libnfpfort.a(writematrix.o)(.text+0x2009): In function `writematrixf_':
> : undefined reference to `flush_'
> ../../.././ni/src/lib/nfpfort/libnfpfort.a(writematrix.o)(.text+0x292d): In function `writematrixi_':
> : undefined reference to `flush_'
> make[4]: *** [ncl] Error 1
> make[4]: Leaving directory `/usr/apps/vis/ncl/ncl_ncarg-5.1.0/ni/src/ncl'
>
> Has anyone run into this before? Am I missing a link to a library?
> Thanks for any help,
> Mark
>
> -- 
> Mark Van Moer
> Visualization Programmer
> Advanced Applications Support
> NCSA, University of Illinois
> mvanmoer at ncsa.illinois.edu
>
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