[ncl-install] NCL 5.1.0 install problems on x86_64 cluster

Mark Van Moer mvanmoer at ncsa.illinois.edu
Wed Jun 3 08:45:38 MDT 2009


Hi, I'm attempting to build NCL 5.1.0 on an Intel x86_64 cluster using Intel compilers. 

Everything is getting built except ncl and MakeNcl. The ncl build gives:

icc -ansi -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o ncl Ncl.o io.o NclHLUObj.o scanner.o parser.o MathFuncs.o NclTypedouble.o NclTypefloat.o NclTypeint.o NclTypelogical.o NclTypelong.o NclTypeobj.o NclTypeshort.o NclTypestring.o NclTypebyte.o NclTypechar.o TypeSupport.o NclMultiDValData.o AddFileFormats.o AttSupport.o DataSupport.o FileSupport.o Formats.o GetGrids.o InitData.o Memory.o NclAtt.o NclCCM.o NclCoordVar.o NclData.o NclFile.o NclFileVar.o NclGRIB.o NclHDF.o NclMultiDValnclfileData.o NclNetCdf.o NclOneDValCoordData.o NclType.o NclTypelist.o NclVar.o VarSupport.o ctoiee.o date.o qu2reg3.o rowina3.o scm0.o ncepcode.o AddBuiltIns.o AddHLUObjs.o AddIntrinsics.o Execute.o Machine.o OpsFuncs.o Printtoken.o SrcTree.o Symbol.o Translate.o NclHLUVar.o HLUSupport.o NclMultiDValHLUObjData.o BuiltInSupport.o BuiltInFuncs.o userAddProto.o userAddFuncs.o HLUFunctions.o yywrap.o craybin.o complete.o editline.o sysunix.o ListSupport.o NclList.o NclMultiDVallistData.o fortranio.o  -L../../.././ni/src/lib/nfp -lnfp -L../../.././ni/src/lib/nfpfort -lnfpfort -L../../.././ni/src/lib/hlu -lhlu -L../../.././ncarg2d/src/libncarg -lncarg -L../../.././ncarg2d/src/libncarg_gks -lncarg_gks -L../../.././common/src/libncarg_c -lncarg_c -L../../.././ngmath/src/lib -lngmath -L/usr/apps/vis/ncl/ncl_ncarg-5.1.0/lib -L/usr/local/X11R6/lib64 -L/usr/apps/vis/netcdf/netcdf-4.0/lib -L/usr/apps/hdf/hdf4/v424-noncdf/lib -L/usr/apps/hdf/szip/lib -L/usr/apps/hdf/hdf5/v182/lib -lnetcdf -lhdf5_hl -lhdf5 -lsz  -lmfhdf -ldf -ljpeg -lz -lsz -lpng -lz -L../../.././external/sphere3.1_dp -lsphere3.1_dp -L../../.././external/fftpack5_dp -lfftpack5_dp -L../../.././external/lapack -llapack_ncl -L../../.././external/blas -lblas_ncl -lXpm -lX11 -lXext -lm -lifcore -lm  -ldl

../../.././ni/src/lib/nfpfort/libnfpfort.a(writematrix.o)(.text+0x4d1): In function `writematrixs_':
: undefined reference to `flush_'
../../.././ni/src/lib/nfpfort/libnfpfort.a(writematrix.o)(.text+0xdd5): In function `writematrixb_':
: undefined reference to `flush_'
../../.././ni/src/lib/nfpfort/libnfpfort.a(writematrix.o)(.text+0x16e5): In function `writematrixd_':
: undefined reference to `flush_'
../../.././ni/src/lib/nfpfort/libnfpfort.a(writematrix.o)(.text+0x2009): In function `writematrixf_':
: undefined reference to `flush_'
../../.././ni/src/lib/nfpfort/libnfpfort.a(writematrix.o)(.text+0x292d): In function `writematrixi_':
: undefined reference to `flush_'
make[4]: *** [ncl] Error 1
make[4]: Leaving directory `/usr/apps/vis/ncl/ncl_ncarg-5.1.0/ni/src/ncl'

Has anyone run into this before? Am I missing a link to a library?
Thanks for any help,
Mark

-- 
Mark Van Moer
Visualization Programmer
Advanced Applications Support
NCSA, University of Illinois
mvanmoer at ncsa.illinois.edu



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