<p><b>dwj07@fsu.edu</b> 2013-03-21 11:30:42 -0600 (Thu, 21 Mar 2013)</p><p><br>
        -- DOCUMENT COMMIT --<br>
<br>
        Updating ocean documentation.<br>
</p><hr noshade><pre><font color="gray">Modified: trunk/documents/users_guide/ocean/namelist_section_documentation.tex
===================================================================
--- trunk/documents/users_guide/ocean/namelist_section_documentation.tex        2013-03-21 17:30:31 UTC (rev 2648)
+++ trunk/documents/users_guide/ocean/namelist_section_documentation.tex        2013-03-21 17:30:42 UTC (rev 2649)
@@ -458,7 +458,7 @@
\hline
Possible Values: & .true. or .false. \\
\hline
- \caption{config\_hmix\_ScaleWithMesh: If false, del2 and del4 coefficients are constant throughout the mesh (equivalent to setting $\rho\_m=1$ throughout the mesh). If true, these coefficients scale as mesh density to the -3/4 power.}
+ \caption{config\_hmix\_ScaleWithMesh: If false, del2 and del4 coefficients are constant throughout the mesh (equivalent to setting $\rho_m=1$ throughout the mesh). If true, these coefficients scale as mesh density to the -3/4 power.}
\end{longtable}
\end{center}
\subsection[config\_visc\_vorticity\_term]{\hyperref[sec:nm_tab_hmix]{config\_visc\_vorticity\_term}}
@@ -490,7 +490,7 @@
\hline
Possible Values: & Any non-negative number, typically between zero and one. \\
\hline
- \caption{config\_apvm\_scale\_factor: Anticipated potential vorticity (APV) method scale factor, $c\_{apv}$ . When zero, APV is off.}
+ \caption{config\_apvm\_scale\_factor: Anticipated potential vorticity (APV) method scale factor, $c_{apv}$ . When zero, APV is off.}
\end{longtable}
\end{center}
\section[hmix\_del2]{\hyperref[sec:nm_tab_hmix_del2]{hmix\_del2}}
@@ -540,7 +540,7 @@
\hline
Possible Values: & any positive real \\
\hline
- \caption{config\_mom\_del2: Horizonal viscosity, $</font>
<font color="blue">u\_h$ .}
+ \caption{config\_mom\_del2: Horizonal viscosity, $</font>
<font color="gray">u_h$ .}
\end{longtable}
\end{center}
\subsection[config\_tracer\_del2]{\hyperref[sec:nm_tab_hmix_del2]{config\_tracer\_del2}}
@@ -556,7 +556,7 @@
\hline
Possible Values: & any positive real \\
\hline
- \caption{config\_tracer\_del2: Horizonal diffusion, $\kappa\_h$ .}
+ \caption{config\_tracer\_del2: Horizonal diffusion, $\kappa_h$ .}
\end{longtable}
\end{center}
\subsection[config\_vorticity\_del2\_scale]{\hyperref[sec:nm_tab_hmix_del2]{config\_vorticity\_del2\_scale}}
@@ -788,7 +788,7 @@
\hline
Possible Values: & Any positive real value. \\
\hline
- \caption{config\_Rayleigh\_damping\_coeff: Inverse-time coefficient for the Rayleigh damping term, $c\_R$ .}
+ \caption{config\_Rayleigh\_damping\_coeff: Inverse-time coefficient for the Rayleigh damping term, $c_R$ .}
\end{longtable}
\end{center}
\section[vmix]{\hyperref[sec:nm_tab_vmix]{vmix}}
@@ -1150,7 +1150,7 @@
\hline
Possible Values: & any positive real value, but typically between 30 and 90 days. \\
\hline
- \caption{config\_restoreT\_timescale: Restoring timescale for temperature, $\tau\_r.$ }
+ \caption{config\_restoreT\_timescale: Restoring timescale for temperature, $\tau_r.$ }
\end{longtable}
\end{center}
\subsection[config\_restoreS\_timescale]{\hyperref[sec:nm_tab_forcing]{config\_restoreS\_timescale}}
@@ -1166,7 +1166,7 @@
\hline
Possible Values: & any positive real value, but typically between 30 and 90 days. \\
\hline
- \caption{config\_restoreS\_timescale: Restoring timescale for salinity, $\tau\_r$ .}
+ \caption{config\_restoreS\_timescale: Restoring timescale for salinity, $\tau_r$ .}
\end{longtable}
\end{center}
\section[advection]{\hyperref[sec:nm_tab_advection]{advection}}
@@ -1266,7 +1266,7 @@
\hline
Possible Values: & any positive real, typically 1.0e-3 \\
\hline
- \caption{config\_bottom\_drag\_coeff: Dimensionless bottom drag coefficient, $c\_{drag}$ .}
+ \caption{config\_bottom\_drag\_coeff: Dimensionless bottom drag coefficient, $c_{drag}$ .}
\end{longtable}
\end{center}
\section[pressure\_gradient]{\hyperref[sec:nm_tab_pressure_gradient]{pressure\_gradient}}
@@ -1300,7 +1300,7 @@
\hline
Possible Values: & any positive real, but typically 1000-1035 \\
\hline
- \caption{config\_rho0: Density used as a coefficient of the pressure gradient terms, $\rho\_0$ . This is a constant due to the Boussinesq approximation.}
+ \caption{config\_rho0: Density used as a coefficient of the pressure gradient terms, $\rho_0$ . This is a constant due to the Boussinesq approximation.}
\end{longtable}
\end{center}
\section[eos]{\hyperref[sec:nm_tab_eos]{eos}}
Modified: trunk/documents/users_guide/ocean/namelist_table_documentation.tex
===================================================================
--- trunk/documents/users_guide/ocean/namelist_table_documentation.tex        2013-03-21 17:30:31 UTC (rev 2648)
+++ trunk/documents/users_guide/ocean/namelist_table_documentation.tex        2013-03-21 17:30:42 UTC (rev 2649)
@@ -129,11 +129,11 @@
        {\bf Name} & {\bf Description} \\
        \hline
        \hline
-        \hyperref[subsec:nm_sec_config_hmix_ScaleWithMesh]{config\_hmix\_ScaleWithMesh} & If false, del2 and del4 coefficients are constant throughout the mesh (equivalent to setting $\rho\_m=1$ throughout the mesh). If true, these coefficients scale as mesh density to the -3/4 power. \\
+        \hyperref[subsec:nm_sec_config_hmix_ScaleWithMesh]{config\_hmix\_ScaleWithMesh} & If false, del2 and del4 coefficients are constant throughout the mesh (equivalent to setting $\rho_m=1$ throughout the mesh). If true, these coefficients scale as mesh density to the -3/4 power. \\
        \hline
        \hyperref[subsec:nm_sec_config_visc_vorticity_term]{config\_visc\_vorticity\_term} & {\color{red} TO BE DELETED} \\
        \hline
-        \hyperref[subsec:nm_sec_config_apvm_scale_factor]{config\_apvm\_scale\_factor} & Anticipated potential vorticity (APV) method scale factor, $c\_{apv}$ . When zero, APV is off. \\
+        \hyperref[subsec:nm_sec_config_apvm_scale_factor]{config\_apvm\_scale\_factor} & Anticipated potential vorticity (APV) method scale factor, $c_{apv}$ . When zero, APV is off. \\
        \hline
\end{longtable}
\end{center}
@@ -152,9 +152,9 @@
        \hline
        \hyperref[subsec:nm_sec_config_use_tracer_del2]{config\_use\_tracer\_del2} & If true, Laplacian horizontal mixing is used on the tracer equation. \\
        \hline
-        \hyperref[subsec:nm_sec_config_mom_del2]{config\_mom\_del2} & Horizonal viscosity, $</font>
<font color="blue">u\_h$ . \\
+        \hyperref[subsec:nm_sec_config_mom_del2]{config\_mom\_del2} & Horizonal viscosity, $</font>
<font color="gray">u_h$ . \\
        \hline
-        \hyperref[subsec:nm_sec_config_tracer_del2]{config\_tracer\_del2} & Horizonal diffusion, $\kappa\_h$ . \\
+        \hyperref[subsec:nm_sec_config_tracer_del2]{config\_tracer\_del2} & Horizonal diffusion, $\kappa_h$ . \\
        \hline
        \hyperref[subsec:nm_sec_config_vorticity_del2_scale]{config\_vorticity\_del2\_scale} & {\color{red} TO BE DELETED} \\
        \hline
@@ -233,7 +233,7 @@
        \hline
        \hyperref[subsec:nm_sec_config_Rayleigh_friction]{config\_Rayleigh\_friction} & If true, Rayleigh friction is included in the momentum equation. \\
        \hline
-        \hyperref[subsec:nm_sec_config_Rayleigh_damping_coeff]{config\_Rayleigh\_damping\_coeff} & Inverse-time coefficient for the Rayleigh damping term, $c\_R$ . \\
+        \hyperref[subsec:nm_sec_config_Rayleigh_damping_coeff]{config\_Rayleigh\_damping\_coeff} & Inverse-time coefficient for the Rayleigh damping term, $c_R$ . \\
        \hline
\end{longtable}
\end{center}
@@ -338,9 +338,9 @@
        \hline
        \hyperref[subsec:nm_sec_config_restoreTS]{config\_restoreTS} & If true, the restoring term is activated in the tracer equation for temperature and salinity. \\
        \hline
-        \hyperref[subsec:nm_sec_config_restoreT_timescale]{config\_restoreT\_timescale} & Restoring timescale for temperature, $\tau\_r.$ \\
+        \hyperref[subsec:nm_sec_config_restoreT_timescale]{config\_restoreT\_timescale} & Restoring timescale for temperature, $\tau_r.$ \\
        \hline
-        \hyperref[subsec:nm_sec_config_restoreS_timescale]{config\_restoreS\_timescale} & Restoring timescale for salinity, $\tau\_r$ . \\
+        \hyperref[subsec:nm_sec_config_restoreS_timescale]{config\_restoreS\_timescale} & Restoring timescale for salinity, $\tau_r$ . \\
        \hline
\end{longtable}
\end{center}
@@ -378,7 +378,7 @@
        {\bf Name} & {\bf Description} \\
        \hline
        \hline
-        \hyperref[subsec:nm_sec_config_bottom_drag_coeff]{config\_bottom\_drag\_coeff} & Dimensionless bottom drag coefficient, $c\_{drag}$ . \\
+        \hyperref[subsec:nm_sec_config_bottom_drag_coeff]{config\_bottom\_drag\_coeff} & Dimensionless bottom drag coefficient, $c_{drag}$ . \\
        \hline
\end{longtable}
\end{center}
@@ -395,7 +395,7 @@
        \hline
        \hyperref[subsec:nm_sec_config_pressure_gradient_type]{config\_pressure\_gradient\_type} & Form of pressure gradient terms in momentum equation. For most applications, the gradient of pressure and layer mid-depth are appropriate. For isopycnal coordinates, one may use the gradient of the Montgomery potential. \\
        \hline
-        \hyperref[subsec:nm_sec_config_rho0]{config\_rho0} & Density used as a coefficient of the pressure gradient terms, $\rho\_0$ . This is a constant due to the Boussinesq approximation. \\
+        \hyperref[subsec:nm_sec_config_rho0]{config\_rho0} & Density used as a coefficient of the pressure gradient terms, $\rho_0$ . This is a constant due to the Boussinesq approximation. \\
        \hline
\end{longtable}
\end{center}
</font>
</pre>