<p><b>dwj07@fsu.edu</b> 2013-03-15 09:30:08 -0600 (Fri, 15 Mar 2013)</p><p><br>
-- DOCUMENT COMMIT --<br>
<br>
Updating auto-generated documentation with new versions based on the XML registry file.<br>
</p><hr noshade><pre><font color="gray">Modified: trunk/documents/users_guide/ocean/dimension_table_documentation.tex
===================================================================
--- trunk/documents/users_guide/ocean/dimension_table_documentation.tex 2013-03-15 14:09:09 UTC (rev 2617)
+++ trunk/documents/users_guide/ocean/dimension_table_documentation.tex 2013-03-15 15:30:08 UTC (rev 2618)
@@ -2,37 +2,38 @@
\label{chap:dimensions}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{1.0in} || p{1.0in} | p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Units} & {\bf Description} \\
\hline
- nCells & {\bf \color{red} MISSING} \\
+ \hline
+ nCells & unitless & The number of polygons in the primary grid. \\
\hline
- nEdges & {\bf \color{red} MISSING} \\
+ nEdges & unitless & The number of edge midpoints in either the primary or dual grid. \\
\hline
- maxEdges & {\bf \color{red} MISSING} \\
+ maxEdges & unitless & The largest number of edges any polygon within the grid has. \\
\hline
- maxEdges2 & {\bf \color{red} MISSING} \\
+ maxEdges2 & unitless & Two times the largest number of edges any polygon within the grid has. \\
\hline
- nAdvectionCells & {\bf \color{red} MISSING} \\
+ nAdvectionCells & unitless & The largest number of advection cells for any edge. \\
\hline
- nVertices & {\bf \color{red} MISSING} \\
+ nVertices & unitless & The total number of cells in the dual grid. Also the number of corners in the primary grid. \\
\hline
- TWO & {\bf \color{red} MISSING} \\
+ TWO & unitless & The number two as a dimension. \\
\hline
- R3 & {\bf \color{red} MISSING} \\
+ R3 & unitless & The number three as a dimension. \\
\hline
- FIFTEEN & {\bf \color{red} MISSING} \\
+ FIFTEEN & unitless & The number 15 as a dimension. \\
\hline
- TWENTYONE & {\bf \color{red} MISSING} \\
+ TWENTYONE & unitless & The number 21 as a dimension. \\
\hline
- vertexDegree & {\bf \color{red} MISSING} \\
+ vertexDegree & unitless & The number of cells or edges touching each vertex. \\
\hline
- nVertLevels & {\bf \color{red} MISSING} \\
+ nVertLevels & unitless & The number of levels in the vertical direction. All vertical levels share the same horizontal locations. \\
\hline
- nVertLevelsP1 & {\bf \color{red} MISSING} \\
+ nVertLevelsP1 & unitless & The number of interfaces in the vertical direction. \\
\hline
- nMonths & {\bf \color{red} MISSING} \\
+ nMonths & unitless & The number of forcing slices in the monthly forcing fields. {\bf \color{red} Deprecated. Should be removed.} \\
\hline
\end{longtable}
\end{center}
Modified: trunk/documents/users_guide/ocean/namelist_section_documentation.tex
===================================================================
--- trunk/documents/users_guide/ocean/namelist_section_documentation.tex 2013-03-15 14:09:09 UTC (rev 2617)
+++ trunk/documents/users_guide/ocean/namelist_section_documentation.tex 2013-03-15 15:30:08 UTC (rev 2618)
@@ -10,13 +10,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_do\_restart: Flag that controls starting simulation from a restart, or inital conditions that are built into the input file.}
+ \caption{config\_do\_restart: Determines if the initial conditions should be read from a restart file, or an input file.}
\end{longtable}
\end{center}
\subsection[config\_start\_time]{\hyperref[sec:nm_tab_time_management]{config\_start\_time}}
@@ -24,15 +24,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & YYYY\_MM\_DD\_HH:MM:SS \\
+ Units: & unitless \\
\hline
Default Value: & '0000-01-01\_00:00:00' \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & 'YYYY-MM-DD\_HH:MM:SS' or 'file' \\
\hline
- \caption{config\_start\_time: Time stamp that describes the initial time of the simulation.}
+ \caption{config\_start\_time: Timestamp describing the initial time of the simulation. If it is set to 'file', the initial time is read from restart\_timestamp.}
\end{longtable}
\end{center}
\subsection[config\_stop\_time]{\hyperref[sec:nm_tab_time_management]{config\_stop\_time}}
@@ -40,15 +40,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & YYYY\_MM\_DD\_HH:MM:SS \\
+ Units: & unitless \\
\hline
Default Value: & 'none' \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & 'YYYY-MM-DD\_HH:MM:SS' or 'none' \\
\hline
- \caption{config\_stop\_time: Time stamp that describes the ending time of the simulation. If the value is 'none', config\_stop\_time is inferred using config\_run\_duration and config\_start\_time.}
+ \caption{config\_stop\_time: Timestamp descriping the final time of the simulation. If it is set to 'none' the final time is determined from config\_start\_time and config\_run\_duration.}
\end{longtable}
\end{center}
\subsection[config\_run\_duration]{\hyperref[sec:nm_tab_time_management]{config\_run\_duration}}
@@ -56,15 +56,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & DD\_HH:MM:SS \\
+ Units: & unitless \\
\hline
Default Value: & '0\_06:00:00' \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & 'DDDD\_HH:MM:SS' or 'none' \\
\hline
- \caption{config\_run\_duration: Time stamp that describes the amount of time in the simulation. If the value is 'none', config\_run\_duration is inferred using config\_start\_time and config\_stop\_time.}
+ \caption{config\_run\_duration: Timestamp describing the length of the simulation. If it is set to 'none' the duraction is determined from config\_start\_time and config\_stop\_time. config\_run\_duration overrides inconsistent values of config\_stop\_time.}
\end{longtable}
\end{center}
\subsection[config\_calendar\_type]{\hyperref[sec:nm_tab_time_management]{config\_calendar\_type}}
@@ -72,15 +72,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & '360day' \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & 'gregorian', 'gregorian\_noleap', or '360day' \\
\hline
- \caption{config\_calendar\_type: Calendar type that defines the calendar used in the simualtion.}
+ \caption{config\_calendar\_type: Selection of the type of calendar that should be used in the simulation.}
\end{longtable}
\end{center}
\section[io]{\hyperref[sec:nm_tab_io]{io}}
@@ -90,15 +90,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 'grid.nc' \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_input\_name: String that defines the full or relative path to the input file.}
+ \caption{config\_input\_name: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_output\_name]{\hyperref[sec:nm_tab_io]{config\_output\_name}}
@@ -106,15 +106,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 'output.nc' \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_output\_name: String that defines the full or relative path to where the output file(s) will be written.}
+ \caption{config\_output\_name: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_restart\_name]{\hyperref[sec:nm_tab_io]{config\_restart\_name}}
@@ -122,15 +122,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 'restart.nc' \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_restart\_name: String that defines the full or relative path to where the restart file(s) will be read and written.}
+ \caption{config\_restart\_name: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_restart\_interval]{\hyperref[sec:nm_tab_io]{config\_restart\_interval}}
@@ -138,15 +138,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & DD\_HH:MM:SS \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & '0\_06:00:00' \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_restart\_interval: Time stamp that defines how often restart files should be written.}
+ \caption{config\_restart\_interval: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_output\_interval]{\hyperref[sec:nm_tab_io]{config\_output\_interval}}
@@ -154,15 +154,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & DD\_HH:MM:SS \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & '0\_06:00:00' \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_output\_interval: Time stamp that defines how often output files should be written.}
+ \caption{config\_output\_interval: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_stats\_interval]{\hyperref[sec:nm_tab_io]{config\_stats\_interval}}
@@ -170,15 +170,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & DD\_HH:MM:SS \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & '0\_01:00:00' \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_stats\_interval: Time stamp that defines how often statistics output should be written.}
+ \caption{config\_stats\_interval: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_write\_stats\_on\_startup]{\hyperref[sec:nm_tab_io]{config\_write\_stats\_on\_startup}}
@@ -188,13 +188,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .true. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_write\_stats\_on\_startup: Flag that defines if statistics should be computed using the initial conditions.}
+ \caption{config\_write\_stats\_on\_startup: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_write\_output\_on\_startup]{\hyperref[sec:nm_tab_io]{config\_write\_output\_on\_startup}}
@@ -204,13 +204,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .true. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_write\_output\_on\_startup: Flag that defines if output should be performed using the initial conditions.}
+ \caption{config\_write\_output\_on\_startup: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_frames\_per\_outfile]{\hyperref[sec:nm_tab_io]{config\_frames\_per\_outfile}}
@@ -220,13 +220,13 @@
\hline
Type: & integer \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1000 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_frames\_per\_outfile: Number of time slices in an output file.}
+ \caption{config\_frames\_per\_outfile: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_pio\_num\_iotasks]{\hyperref[sec:nm_tab_io]{config\_pio\_num\_iotasks}}
@@ -236,13 +236,13 @@
\hline
Type: & integer \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_pio\_num\_iotasks: Number of iotasks used with PIO in the simulation.}
+ \caption{config\_pio\_num\_iotasks: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_pio\_stride]{\hyperref[sec:nm_tab_io]{config\_pio\_stride}}
@@ -252,13 +252,13 @@
\hline
Type: & integer \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_pio\_stride: Stride of PIO iotasks in the simulation.}
+ \caption{config\_pio\_stride: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[time\_integration]{\hyperref[sec:nm_tab_time_integration]{time\_integration}}
@@ -270,13 +270,13 @@
\hline
Type: & real \\
\hline
- Units: & Seconds \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 3000.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_dt: Length of a single time step.}
+ \caption{config\_dt: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_time\_integrator]{\hyperref[sec:nm_tab_time_integration]{config\_time\_integrator}}
@@ -284,15 +284,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 'split\_explicit' \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_time\_integrator: Time integration scheme to be used for the simulation.}
+ \caption{config\_time\_integrator: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[grid]{\hyperref[sec:nm_tab_grid]{grid}}
@@ -304,13 +304,13 @@
\hline
Type: & integer \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & 3 \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & Any positive interger value. \\
\hline
- \caption{config\_num\_halos: Defines the number of halos extending outward from owned cells.}
+ \caption{config\_num\_halos: Determines the number of halo cells extending from a blocks owned cells (Called the 0-Halo). The default of 3 is the minimum that can be used with monotonic advection.}
\end{longtable}
\end{center}
\subsection[config\_vert\_coord\_movement]{\hyperref[sec:nm_tab_grid]{config\_vert\_coord\_movement}}
@@ -318,15 +318,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & 'uniform\_stretching' \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & 'uniform\_stretching', 'fixed', 'user\_specified', 'isopycnal' \\
\hline
- \caption{config\_vert\_coord\_movement: Defines the movement of the vertical coordinate.}
+ \caption{config\_vert\_coord\_movement: Determines the vertical coordinate movement type. 'uniform\_stretching' distrubtes SSH perturbations through all vertical levels, 'fixed' places them all in the top level, 'user\_specified' allows the input file to determine the distribution, and 'isopycnal' causes levels to be pure isopycnal.}
\end{longtable}
\end{center}
\subsection[config\_alter\_ICs\_for\_pbcs]{\hyperref[sec:nm_tab_grid]{config\_alter\_ICs\_for\_pbcs}}
@@ -334,15 +334,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & 'zlevel\_pbcs\_off' \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & 'zlevel\_pbcs\_on', 'zlevel\_pbcs\_off', 'off' \\
\hline
- \caption{config\_alter\_ICs\_for\_pbcs: Flag that controls how or if partial bottom cells are used.}
+ \caption{config\_alter\_ICs\_for\_pbcs: Determines the method of alteration for partial bottom cells. 'zlevel\_pbcs\_on' alters the initial conditions for partial bottom cells, 'zlevel\_pbcs\_off' alters the initial conditions to have full cells everwhere, and 'off' does nothing to the initial conditions.}
\end{longtable}
\end{center}
\subsection[config\_min\_pbc\_fraction]{\hyperref[sec:nm_tab_grid]{config\_min\_pbc\_fraction}}
@@ -352,13 +352,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & 0.10 \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & Any real between 0 and 1. \\
\hline
- \caption{config\_min\_pbc\_fraction: Defines the minimum allowed fraction for partial bottom cells.}
+ \caption{config\_min\_pbc\_fraction: Determines the minimum fraction of a cell altering the initial conditions can create.}
\end{longtable}
\end{center}
\subsection[config\_check\_ssh\_consistency]{\hyperref[sec:nm_tab_grid]{config\_check\_ssh\_consistency}}
@@ -368,13 +368,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .true. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_check\_ssh\_consistency: Flag that enables an initial consistency check for sea surface height.}
+ \caption{config\_check\_ssh\_consistency: Enables a check to determine if the SSH is consistent across relevant variables.}
\end{longtable}
\end{center}
\section[decomposition]{\hyperref[sec:nm_tab_decomposition]{decomposition}}
@@ -384,15 +384,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & 'graph.info.part.' \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & Any path/prefix to a block decomposition file. \\
\hline
- \caption{config\_block\_decomp\_file\_prefix: String that defines the full or relative path and prefix for the block decomposition files.}
+ \caption{config\_block\_decomp\_file\_prefix: Defines the prefix for the block decomposition file. Can include a path. The number of blocks is appended to the end of the prefix at run-time.}
\end{longtable}
\end{center}
\subsection[config\_number\_of\_blocks]{\hyperref[sec:nm_tab_decomposition]{config\_number\_of\_blocks}}
@@ -402,13 +402,13 @@
\hline
Type: & integer \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & 0 \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & Any integer $>=$ 0. \\
\hline
- \caption{config\_number\_of\_blocks: The number of computational blocks in the simulation.}
+ \caption{config\_number\_of\_blocks: Determines the number of blocks a simulation should be run with. If it is set to 0, the number of blocks is the same as the number of MPI tasks at run-time.}
\end{longtable}
\end{center}
\subsection[config\_explicit\_proc\_decomp]{\hyperref[sec:nm_tab_decomposition]{config\_explicit\_proc\_decomp}}
@@ -418,13 +418,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_explicit\_proc\_decomp: Flag that enables/disables the use of a config\_proc\_decomp\_file to distribute computational blocks through processors.}
+ \caption{config\_explicit\_proc\_decomp: Determines if an explicit processor decomposition should be used. This is only useful if multiple blocks per processor are used.}
\end{longtable}
\end{center}
\subsection[config\_proc\_decomp\_file\_prefix]{\hyperref[sec:nm_tab_decomposition]{config\_proc\_decomp\_file\_prefix}}
@@ -432,15 +432,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & 'graph.info.part.' \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & Any path/prefix to a processor decomposition file. \\
\hline
- \caption{config\_proc\_decomp\_file\_prefix: String that defines the fille or relative path and prefix for the processor decomposition files.}
+ \caption{config\_proc\_decomp\_file\_prefix: Defines the prefix for the processor decomposition file. This file is only read if config\_explicit\_proc\_decomp is .true. The number of processors is appended to the end of the prefix at run-time.}
\end{longtable}
\end{center}
\section[hmix]{\hyperref[sec:nm_tab_hmix]{hmix}}
@@ -452,13 +452,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .false. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_hmix\_ScaleWithMesh: Flag that controls if horizontal mixing parameters scale with the mesh density.}
+ \caption{config\_hmix\_ScaleWithMesh: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_visc\_vorticity\_term]{\hyperref[sec:nm_tab_hmix]{config\_visc\_vorticity\_term}}
@@ -468,13 +468,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .true. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_visc\_vorticity\_term: {\bf \color{red} DEFINE}}
+ \caption{config\_visc\_vorticity\_term: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_apvm\_scale\_factor]{\hyperref[sec:nm_tab_hmix]{config\_apvm\_scale\_factor}}
@@ -484,13 +484,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 0.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_apvm\_scale\_factor: {\bf \color{red} DEFINE}}
+ \caption{config\_apvm\_scale\_factor: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[hmix\_del2]{\hyperref[sec:nm_tab_hmix_del2]{hmix\_del2}}
@@ -502,13 +502,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .false. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_use\_mom\_del2: Flag that controls if del2 will be used for horizontal mixing of momentum.}
+ \caption{config\_use\_mom\_del2: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_use\_tracer\_del2]{\hyperref[sec:nm_tab_hmix_del2]{config\_use\_tracer\_del2}}
@@ -518,13 +518,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .false. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_use\_tracer\_del2: Flag that controls if del2 will be used for horizontal mixing of tracers.}
+ \caption{config\_use\_tracer\_del2: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_mom\_del2]{\hyperref[sec:nm_tab_hmix_del2]{config\_mom\_del2}}
@@ -534,13 +534,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 0.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_mom\_del2: Value of del2 coefficient for horizontal mixing of momentum.}
+ \caption{config\_mom\_del2: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_tracer\_del2]{\hyperref[sec:nm_tab_hmix_del2]{config\_tracer\_del2}}
@@ -550,13 +550,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 0.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_tracer\_del2: Value of del2 coefficient for horizontal mixing of tracers.}
+ \caption{config\_tracer\_del2: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_vorticity\_del2\_scale]{\hyperref[sec:nm_tab_hmix_del2]{config\_vorticity\_del2\_scale}}
@@ -566,13 +566,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_vorticity\_del2\_scale: {\bf \color{red} DEFINE}}
+ \caption{config\_vorticity\_del2\_scale: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[hmix\_del4]{\hyperref[sec:nm_tab_hmix_del4]{hmix\_del4}}
@@ -584,13 +584,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .true. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_use\_mom\_del4: Flag that controls if del4 will be used for horizontal mixing of momentum.}
+ \caption{config\_use\_mom\_del4: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_use\_tracer\_del4]{\hyperref[sec:nm_tab_hmix_del4]{config\_use\_tracer\_del4}}
@@ -600,13 +600,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .false. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_use\_tracer\_del4: Flag that controls if del4 will be used for horizontal mixing of tracers.}
+ \caption{config\_use\_tracer\_del4: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_mom\_del4]{\hyperref[sec:nm_tab_hmix_del4]{config\_mom\_del4}}
@@ -616,13 +616,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 5.0e13 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_mom\_del4: Value of del4 coefficient for horizontal mixing of momentum.}
+ \caption{config\_mom\_del4: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_tracer\_del4]{\hyperref[sec:nm_tab_hmix_del4]{config\_tracer\_del4}}
@@ -632,13 +632,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 0.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_tracer\_del4: Value of del4 coefficient for horizontal mixing of tracers.}
+ \caption{config\_tracer\_del4: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_vorticity\_del4\_scale]{\hyperref[sec:nm_tab_hmix_del4]{config\_vorticity\_del4\_scale}}
@@ -648,13 +648,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_vorticity\_del4\_scale: {\bf \color{red} DEFINE}}
+ \caption{config\_vorticity\_del4\_scale: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[hmix\_Leith]{\hyperref[sec:nm_tab_hmix_Leith]{hmix\_Leith}}
@@ -666,13 +666,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .false. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_use\_Leith\_del2: Flag that controls if the Leith closure will be used for horizontal mixing.}
+ \caption{config\_use\_Leith\_del2: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_Leith\_parameter]{\hyperref[sec:nm_tab_hmix_Leith]{config\_Leith\_parameter}}
@@ -682,13 +682,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_Leith\_parameter: {\bf \color{red} DEFINE}}
+ \caption{config\_Leith\_parameter: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_Leith\_dx]{\hyperref[sec:nm_tab_hmix_Leith]{config\_Leith\_dx}}
@@ -698,13 +698,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 15000.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_Leith\_dx: {\bf \color{red} DEFINE}}
+ \caption{config\_Leith\_dx: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_Leith\_visc2\_max]{\hyperref[sec:nm_tab_hmix_Leith]{config\_Leith\_visc2\_max}}
@@ -714,13 +714,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 2.5e3 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_Leith\_visc2\_max: {\bf \color{red} DEFINE}}
+ \caption{config\_Leith\_visc2\_max: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[standard\_GM]{\hyperref[sec:nm_tab_standard_GM]{standard\_GM}}
@@ -732,13 +732,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 0.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_h\_kappa: {\bf \color{red} DEFINE}}
+ \caption{config\_h\_kappa: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_h\_kappa\_q]{\hyperref[sec:nm_tab_standard_GM]{config\_h\_kappa\_q}}
@@ -748,13 +748,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 0.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_h\_kappa\_q: {\bf \color{red} DEFINE}}
+ \caption{config\_h\_kappa\_q: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[Rayleigh\_damping]{\hyperref[sec:nm_tab_Rayleigh_damping]{Rayleigh\_damping}}
@@ -766,13 +766,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .false. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_Rayleigh\_friction: Flag that controls if Rayleigh friction will be used in the simulation.}
+ \caption{config\_Rayleigh\_friction: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_Rayleigh\_damping\_coeff]{\hyperref[sec:nm_tab_Rayleigh_damping]{config\_Rayleigh\_damping\_coeff}}
@@ -782,13 +782,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 0.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_Rayleigh\_damping\_coeff: Value of the Rayleigh friction coefficient.}
+ \caption{config\_Rayleigh\_damping\_coeff: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[vmix]{\hyperref[sec:nm_tab_vmix]{vmix}}
@@ -800,13 +800,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_convective\_visc: Value of coefficient for convective vertical mixing of momentum.}
+ \caption{config\_convective\_visc: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_convective\_diff]{\hyperref[sec:nm_tab_vmix]{config\_convective\_diff}}
@@ -816,13 +816,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_convective\_diff: Value of coefficient for convective vertical mixing of tracers.}
+ \caption{config\_convective\_diff: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[vmix\_const]{\hyperref[sec:nm_tab_vmix_const]{vmix\_const}}
@@ -834,13 +834,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .false. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_use\_const\_visc: Flag that controls if constant vertical mixing of momentum is used.}
+ \caption{config\_use\_const\_visc: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_use\_const\_diff]{\hyperref[sec:nm_tab_vmix_const]{config\_use\_const\_diff}}
@@ -850,13 +850,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .false. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_use\_const\_diff: Flag that controls if constant vertical mixing of tracers is used.}
+ \caption{config\_use\_const\_diff: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_vert\_visc]{\hyperref[sec:nm_tab_vmix_const]{config\_vert\_visc}}
@@ -866,13 +866,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 2.5e-4 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_vert\_visc: Value of coefficient for constant vertical mixing of momentum.}
+ \caption{config\_vert\_visc: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_vert\_diff]{\hyperref[sec:nm_tab_vmix_const]{config\_vert\_diff}}
@@ -882,13 +882,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 2.5e-5 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_vert\_diff: Value of coefficient for constant vertical mixing of tracers.}
+ \caption{config\_vert\_diff: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[vmix\_rich]{\hyperref[sec:nm_tab_vmix_rich]{vmix\_rich}}
@@ -900,13 +900,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .true. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_use\_rich\_visc: Flag that controls if Richarson number vertical mixing of momentum is used.}
+ \caption{config\_use\_rich\_visc: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_use\_rich\_diff]{\hyperref[sec:nm_tab_vmix_rich]{config\_use\_rich\_diff}}
@@ -916,13 +916,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .true. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_use\_rich\_diff: Flag that controls if Richarson number vertical mixing of tracers is used.}
+ \caption{config\_use\_rich\_diff: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_bkrd\_vert\_visc]{\hyperref[sec:nm_tab_vmix_rich]{config\_bkrd\_vert\_visc}}
@@ -932,13 +932,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1.0e-4 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_bkrd\_vert\_visc: Value of coefficient for Richardson number vertical mixing of momentum.}
+ \caption{config\_bkrd\_vert\_visc: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_bkrd\_vert\_diff]{\hyperref[sec:nm_tab_vmix_rich]{config\_bkrd\_vert\_diff}}
@@ -948,13 +948,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1.0e-5 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_bkrd\_vert\_diff: Value of coefficient for Richardson number vertical mixing of tracers.}
+ \caption{config\_bkrd\_vert\_diff: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_rich\_mix]{\hyperref[sec:nm_tab_vmix_rich]{config\_rich\_mix}}
@@ -964,13 +964,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 0.005 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_rich\_mix: {\bf \color{red} DEFINE}}
+ \caption{config\_rich\_mix: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[vmix\_tanh]{\hyperref[sec:nm_tab_vmix_tanh]{vmix\_tanh}}
@@ -982,13 +982,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .false. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_use\_tanh\_visc: Flag that controls if hyperbolic tangent vertical mixing of momentum is used.}
+ \caption{config\_use\_tanh\_visc: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_use\_tanh\_diff]{\hyperref[sec:nm_tab_vmix_tanh]{config\_use\_tanh\_diff}}
@@ -998,13 +998,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .false. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_use\_tanh\_diff: Flag that controls if hyperbolic tangent vertical mixing of tracers is used.}
+ \caption{config\_use\_tanh\_diff: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_max\_visc\_tanh]{\hyperref[sec:nm_tab_vmix_tanh]{config\_max\_visc\_tanh}}
@@ -1014,13 +1014,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 2.5e-1 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_max\_visc\_tanh: {\bf \color{red} DEFINE} }
+ \caption{config\_max\_visc\_tanh: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_min\_visc\_tanh]{\hyperref[sec:nm_tab_vmix_tanh]{config\_min\_visc\_tanh}}
@@ -1030,13 +1030,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1.0e-4 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_min\_visc\_tanh: {\bf \color{red} DEFINE}}
+ \caption{config\_min\_visc\_tanh: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_max\_diff\_tanh]{\hyperref[sec:nm_tab_vmix_tanh]{config\_max\_diff\_tanh}}
@@ -1046,13 +1046,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 2.5e-2 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_max\_diff\_tanh: {\bf \color{red} DEFINE}}
+ \caption{config\_max\_diff\_tanh: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_min\_diff\_tanh]{\hyperref[sec:nm_tab_vmix_tanh]{config\_min\_diff\_tanh}}
@@ -1062,13 +1062,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1.0e-5 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_min\_diff\_tanh: {\bf \color{red} DEFINE}}
+ \caption{config\_min\_diff\_tanh: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_zMid\_tanh]{\hyperref[sec:nm_tab_vmix_tanh]{config\_zMid\_tanh}}
@@ -1078,13 +1078,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & -100 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_zMid\_tanh: {\bf \color{red} DEFINE}}
+ \caption{config\_zMid\_tanh: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_zWidth\_tanh]{\hyperref[sec:nm_tab_vmix_tanh]{config\_zWidth\_tanh}}
@@ -1094,13 +1094,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 100 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_zWidth\_tanh: {\bf \color{red} DEFINE}}
+ \caption{config\_zWidth\_tanh: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[forcing]{\hyperref[sec:nm_tab_forcing]{forcing}}
@@ -1112,13 +1112,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .false. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_use\_monthly\_forcing: Flag that controls if monthly forcing is used in the simulation.}
+ \caption{config\_use\_monthly\_forcing: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_restoreTS]{\hyperref[sec:nm_tab_forcing]{config\_restoreTS}}
@@ -1128,13 +1128,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .false. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_restoreTS: Flag that controls is temperature and salinity restoring is used in the simulation.}
+ \caption{config\_restoreTS: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_restoreT\_timescale]{\hyperref[sec:nm_tab_forcing]{config\_restoreT\_timescale}}
@@ -1144,13 +1144,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 90.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_restoreT\_timescale: Value in days of the restoring timescale for temperature.}
+ \caption{config\_restoreT\_timescale: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_restoreS\_timescale]{\hyperref[sec:nm_tab_forcing]{config\_restoreS\_timescale}}
@@ -1160,13 +1160,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 90.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_restoreS\_timescale: Value in days of the restoring timescale for salinity.}
+ \caption{config\_restoreS\_timescale: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[advection]{\hyperref[sec:nm_tab_advection]{advection}}
@@ -1176,15 +1176,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 'stencil' \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_vert\_tracer\_adv: {\bf \color{red} DEPRECATED}}
+ \caption{config\_vert\_tracer\_adv: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_vert\_tracer\_adv\_order]{\hyperref[sec:nm_tab_advection]{config\_vert\_tracer\_adv\_order}}
@@ -1194,13 +1194,13 @@
\hline
Type: & integer \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 3 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_vert\_tracer\_adv\_order: Order of vertical reconstruction of tracers used for vertical advection.}
+ \caption{config\_vert\_tracer\_adv\_order: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_horiz\_tracer\_adv\_order]{\hyperref[sec:nm_tab_advection]{config\_horiz\_tracer\_adv\_order}}
@@ -1210,13 +1210,13 @@
\hline
Type: & integer \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 3 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_horiz\_tracer\_adv\_order: Order of horizontal reconstruction of tracers used for horizontal advection.}
+ \caption{config\_horiz\_tracer\_adv\_order: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_coef\_3rd\_order]{\hyperref[sec:nm_tab_advection]{config\_coef\_3rd\_order}}
@@ -1226,13 +1226,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 0.25 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_coef\_3rd\_order: Blending coefficient for 3rd and 4th order horizontal reconstruction of tracers.}
+ \caption{config\_coef\_3rd\_order: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_monotonic]{\hyperref[sec:nm_tab_advection]{config\_monotonic}}
@@ -1242,13 +1242,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .true. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_monotonic: Flag that controls if monotonic advection is used in the simulation.}
+ \caption{config\_monotonic: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[bottom\_drag]{\hyperref[sec:nm_tab_bottom_drag]{bottom\_drag}}
@@ -1260,13 +1260,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1.0e-3 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_bottom\_drag\_coeff: Value of the bottom drag coefficient.}
+ \caption{config\_bottom\_drag\_coeff: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[pressure\_gradient]{\hyperref[sec:nm_tab_pressure_gradient]{pressure\_gradient}}
@@ -1276,15 +1276,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 'pressure\_and\_zmid' \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_pressure\_gradient\_type: String that defines the type of pressure gradient used in the simulation.}
+ \caption{config\_pressure\_gradient\_type: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_rho0]{\hyperref[sec:nm_tab_pressure_gradient]{config\_rho0}}
@@ -1294,13 +1294,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1014.65 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_rho0: Value of the reference density for the Boussineq approximation.}
+ \caption{config\_rho0: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[eos]{\hyperref[sec:nm_tab_eos]{eos}}
@@ -1310,15 +1310,15 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & character \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 'jm' \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_eos\_type: String that defines the equation of state used in the simulation.}
+ \caption{config\_eos\_type: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[eos\_linear]{\hyperref[sec:nm_tab_eos_linear]{eos\_linear}}
@@ -1330,13 +1330,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 2.55e-1 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_eos\_linear\_alpha: Value of temperature expansion coefficient used in the linear equation of state.}
+ \caption{config\_eos\_linear\_alpha: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_eos\_linear\_beta]{\hyperref[sec:nm_tab_eos_linear]{config\_eos\_linear\_beta}}
@@ -1346,13 +1346,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 7.64e-1 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_eos\_linear\_beta: Value of salinity expansion coefficient used in the linear equation of state.}
+ \caption{config\_eos\_linear\_beta: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_eos\_linear\_Tref]{\hyperref[sec:nm_tab_eos_linear]{config\_eos\_linear\_Tref}}
@@ -1362,13 +1362,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 19.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_eos\_linear\_Tref: Value of the reference temperature used in the linear equation of state.}
+ \caption{config\_eos\_linear\_Tref: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_eos\_linear\_Sref]{\hyperref[sec:nm_tab_eos_linear]{config\_eos\_linear\_Sref}}
@@ -1378,13 +1378,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 35.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_eos\_linear\_Sref: Value of the reference salinity used in the linear equation of state.}
+ \caption{config\_eos\_linear\_Sref: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_eos\_linear\_rhoref]{\hyperref[sec:nm_tab_eos_linear]{config\_eos\_linear\_rhoref}}
@@ -1394,13 +1394,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1025.022 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_eos\_linear\_rhoref: Value of the reference density used in the linear equation of state.}
+ \caption{config\_eos\_linear\_rhoref: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[split\_explicit\_ts]{\hyperref[sec:nm_tab_split_explicit_ts]{split\_explicit\_ts}}
@@ -1412,13 +1412,13 @@
\hline
Type: & integer \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 2 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_n\_ts\_iter: {\bf \color{red} DEFINE}}
+ \caption{config\_n\_ts\_iter: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_n\_bcl\_iter\_beg]{\hyperref[sec:nm_tab_split_explicit_ts]{config\_n\_bcl\_iter\_beg}}
@@ -1428,13 +1428,13 @@
\hline
Type: & integer \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_n\_bcl\_iter\_beg: {\bf \color{red} DEFINE}}
+ \caption{config\_n\_bcl\_iter\_beg: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_n\_bcl\_iter\_mid]{\hyperref[sec:nm_tab_split_explicit_ts]{config\_n\_bcl\_iter\_mid}}
@@ -1444,13 +1444,13 @@
\hline
Type: & integer \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 2 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_n\_bcl\_iter\_mid: {\bf \color{red} DEFINE}}
+ \caption{config\_n\_bcl\_iter\_mid: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_n\_bcl\_iter\_end]{\hyperref[sec:nm_tab_split_explicit_ts]{config\_n\_bcl\_iter\_end}}
@@ -1460,13 +1460,13 @@
\hline
Type: & integer \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 2 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_n\_bcl\_iter\_end: {\bf \color{red} DEFINE}}
+ \caption{config\_n\_bcl\_iter\_end: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_n\_btr\_subcycles]{\hyperref[sec:nm_tab_split_explicit_ts]{config\_n\_btr\_subcycles}}
@@ -1476,13 +1476,13 @@
\hline
Type: & integer \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 20 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_n\_btr\_subcycles: {\bf \color{red} DEFINE}}
+ \caption{config\_n\_btr\_subcycles: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_n\_btr\_cor\_iter]{\hyperref[sec:nm_tab_split_explicit_ts]{config\_n\_btr\_cor\_iter}}
@@ -1492,13 +1492,13 @@
\hline
Type: & integer \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 2 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_n\_btr\_cor\_iter: {\bf \color{red} DEFINE}}
+ \caption{config\_n\_btr\_cor\_iter: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_u\_correction]{\hyperref[sec:nm_tab_split_explicit_ts]{config\_u\_correction}}
@@ -1508,13 +1508,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .true. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_u\_correction: {\bf \color{red} DEFINE}}
+ \caption{config\_u\_correction: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_btr\_subcycle\_loop\_factor]{\hyperref[sec:nm_tab_split_explicit_ts]{config\_btr\_subcycle\_loop\_factor}}
@@ -1524,13 +1524,13 @@
\hline
Type: & integer \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 2 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_btr\_subcycle\_loop\_factor: {\bf \color{red} DEFINE}}
+ \caption{config\_btr\_subcycle\_loop\_factor: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_btr\_gam1\_uWt1]{\hyperref[sec:nm_tab_split_explicit_ts]{config\_btr\_gam1\_uWt1}}
@@ -1540,13 +1540,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 0.5 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_btr\_gam1\_uWt1: {\bf \color{red} DEFINE}}
+ \caption{config\_btr\_gam1\_uWt1: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_btr\_gam2\_SSHWt1]{\hyperref[sec:nm_tab_split_explicit_ts]{config\_btr\_gam2\_SSHWt1}}
@@ -1556,13 +1556,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_btr\_gam2\_SSHWt1: {\bf \color{red} DEFINE}}
+ \caption{config\_btr\_gam2\_SSHWt1: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_btr\_gam3\_uWt2]{\hyperref[sec:nm_tab_split_explicit_ts]{config\_btr\_gam3\_uWt2}}
@@ -1572,13 +1572,13 @@
\hline
Type: & real \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & 1.0 \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_btr\_gam3\_uWt2: {\bf \color{red} DEFINE}}
+ \caption{config\_btr\_gam3\_uWt2: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_btr\_solve\_SSH2]{\hyperref[sec:nm_tab_split_explicit_ts]{config\_btr\_solve\_SSH2}}
@@ -1588,13 +1588,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & {\bf \color{red} MISSING} \\
\hline
Default Value: & .false. \\
\hline
Possible Values: & {\bf \color{red} MISSING} \\
\hline
- \caption{config\_btr\_solve\_SSH2: {\bf \color{red} DEFINE}}
+ \caption{config\_btr\_solve\_SSH2: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[debug]{\hyperref[sec:nm_tab_debug]{debug}}
@@ -1606,13 +1606,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_check\_zlevel\_consistency: Flag that enables a zlevel consistency check on initialization.}
+ \caption{config\_check\_zlevel\_consistency: Enables a run-time check for consistency for a zlevel grid. Ensures relevant variables correctly define the bottom of the ocean.}
\end{longtable}
\end{center}
\subsection[config\_filter\_btr\_mode]{\hyperref[sec:nm_tab_debug]{config\_filter\_btr\_mode}}
@@ -1622,13 +1622,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_filter\_btr\_mode: Flag that enables the filtering of the barotropic mode.}
+ \caption{config\_filter\_btr\_mode: Enables filtering of the barotropic mode.}
\end{longtable}
\end{center}
\subsection[config\_prescribe\_velocity]{\hyperref[sec:nm_tab_debug]{config\_prescribe\_velocity}}
@@ -1638,13 +1638,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_prescribe\_velocity: Flag that enables prescribed velocities, read from the input file, that remain constant throughout the simulation.}
+ \caption{config\_prescribe\_velocity: Enables a prescribed velocity field. This velocity field is read on input, and remains constant through a simulation.}
\end{longtable}
\end{center}
\subsection[config\_prescribe\_thickness]{\hyperref[sec:nm_tab_debug]{config\_prescribe\_thickness}}
@@ -1654,13 +1654,13 @@
\hline
Type: & logical \\
\hline
- Units: & {\bf \color{red} MISSING} \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_prescribe\_thickness: {\bf \color{red} MISSING}}
+ \caption{config\_prescribe\_thickness: Enables a prescribed thickness field. This thickness field is read on input, and remains constant through a simulation.}
\end{longtable}
\end{center}
\subsection[config\_include\_KE\_vertex]{\hyperref[sec:nm_tab_debug]{config\_include\_KE\_vertex}}
@@ -1670,13 +1670,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_include\_KE\_vertex: {\bf \color{red} DEFINE}}
+ \caption{config\_include\_KE\_vertex: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[config\_check\_tracer\_monotonicity]{\hyperref[sec:nm_tab_debug]{config\_check\_tracer\_monotonicity}}
@@ -1686,13 +1686,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_check\_tracer\_monotonicity: Flag that enables the check for monotonicity of tracers. Only available if config\_monotoic is true.}
+ \caption{config\_check\_tracer\_monotonicity: Enables a change on tracer monotonicity at the end of the monotonic advection routine. Only used if config\_monotonic is set to .true.}
\end{longtable}
\end{center}
\subsection[config\_disable\_h\_all\_tend]{\hyperref[sec:nm_tab_debug]{config\_disable\_h\_all\_tend}}
@@ -1702,13 +1702,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_disable\_h\_all\_tend: Flag that disables all thickness tendencies.}
+ \caption{config\_disable\_h\_all\_tend: Disables all tendencies on the thickness field.}
\end{longtable}
\end{center}
\subsection[config\_disable\_h\_hadv]{\hyperref[sec:nm_tab_debug]{config\_disable\_h\_hadv}}
@@ -1718,13 +1718,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_disable\_h\_hadv: Flag that disables horizontal advection of thickness.}
+ \caption{config\_disable\_h\_hadv: Disable tendencies on the thickness field from horizontal advection.}
\end{longtable}
\end{center}
\subsection[config\_disable\_h\_vadv]{\hyperref[sec:nm_tab_debug]{config\_disable\_h\_vadv}}
@@ -1734,13 +1734,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_disable\_h\_vadv: Flag that disables vertical advection of thickness.}
+ \caption{config\_disable\_h\_vadv: Disables tendencies on the thickness field from vertical advection.}
\end{longtable}
\end{center}
\subsection[config\_disable\_u\_all\_tend]{\hyperref[sec:nm_tab_debug]{config\_disable\_u\_all\_tend}}
@@ -1750,13 +1750,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_disable\_u\_all\_tend: Flag that disables all velocitiy tendencies.}
+ \caption{config\_disable\_u\_all\_tend: Disables all tendencies on the velocity field.}
\end{longtable}
\end{center}
\subsection[config\_disable\_u\_coriolis]{\hyperref[sec:nm_tab_debug]{config\_disable\_u\_coriolis}}
@@ -1766,13 +1766,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_disable\_u\_coriolis: Flag that disables Coriolis tendencies of velocity.}
+ \caption{config\_disable\_u\_coriolis: Diables tendencies on the velocity field from the Coriolis force.}
\end{longtable}
\end{center}
\subsection[config\_disable\_u\_pgrad]{\hyperref[sec:nm_tab_debug]{config\_disable\_u\_pgrad}}
@@ -1782,13 +1782,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_disable\_u\_pgrad: Flag that disables pressure gradient tendencies of velocity.}
+ \caption{config\_disable\_u\_pgrad: Disables tendencies on the velocity field from the horizontal pressure gradient.}
\end{longtable}
\end{center}
\subsection[config\_disable\_u\_hmix]{\hyperref[sec:nm_tab_debug]{config\_disable\_u\_hmix}}
@@ -1798,13 +1798,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_disable\_u\_hmix: Flag that disables horizontal mixing tendencies of velocity.}
+ \caption{config\_disable\_u\_hmix: Disables tendencies on the velocity field from horizontal mixing.}
\end{longtable}
\end{center}
\subsection[config\_disable\_u\_windstress]{\hyperref[sec:nm_tab_debug]{config\_disable\_u\_windstress}}
@@ -1814,13 +1814,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_disable\_u\_windstress: Flag that disables windstress tendencies of velocity.}
+ \caption{config\_disable\_u\_windstress: Disables tendencies on the velocity field from horizontal wind stress.}
\end{longtable}
\end{center}
\subsection[config\_disable\_u\_vmix]{\hyperref[sec:nm_tab_debug]{config\_disable\_u\_vmix}}
@@ -1830,13 +1830,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_disable\_u\_vmix: Flag that disables vertical mixing of velocity.}
+ \caption{config\_disable\_u\_vmix: Disables tendencies on the velocity field from vertical mixing.}
\end{longtable}
\end{center}
\subsection[config\_disable\_u\_vadv]{\hyperref[sec:nm_tab_debug]{config\_disable\_u\_vadv}}
@@ -1846,13 +1846,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_disable\_u\_vadv: Flag that disables vertical advection tendencies of velocity.}
+ \caption{config\_disable\_u\_vadv: Disables tendencies on the velocity field from vertical advection.}
\end{longtable}
\end{center}
\subsection[config\_disable\_tr\_all\_tend]{\hyperref[sec:nm_tab_debug]{config\_disable\_tr\_all\_tend}}
@@ -1862,13 +1862,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_disable\_tr\_all\_tend: Flag that disables all tracer tendencies.}
+ \caption{config\_disable\_tr\_all\_tend: Disables all tendencies on tracer fields.}
\end{longtable}
\end{center}
\subsection[config\_disable\_tr\_adv]{\hyperref[sec:nm_tab_debug]{config\_disable\_tr\_adv}}
@@ -1878,13 +1878,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_disable\_tr\_adv: Flag that disables advection tendencites of tracers.}
+ \caption{config\_disable\_tr\_adv: Disables tendencies on tracer fields from advection, both horizontal and vertical.}
\end{longtable}
\end{center}
\subsection[config\_disable\_tr\_hmix]{\hyperref[sec:nm_tab_debug]{config\_disable\_tr\_hmix}}
@@ -1894,13 +1894,13 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_disable\_tr\_hmix: Flag that disables horizontal mixing tendencites of tracers.}
+ \caption{config\_disable\_tr\_hmix: Disables tendencies on tracer fields from horizontal mixing.}
\end{longtable}
\end{center}
\subsection[config\_disable\_tr\_vmix]{\hyperref[sec:nm_tab_debug]{config\_disable\_tr\_vmix}}
@@ -1910,12 +1910,12 @@
\hline
Type: & logical \\
\hline
- Units: & None \\
+ Units: & unitless \\
\hline
Default Value: & .false. \\
\hline
- Possible Values: & {\bf \color{red} MISSING} \\
+ Possible Values: & .true. or .false. \\
\hline
- \caption{config\_disable\_tr\_vmix: Flag taht disables vertical mixing of tracers.}
+ \caption{config\_disable\_tr\_vmix: Disables tendencies on tracer fields from vertical mixing.}
\end{longtable}
\end{center}
Modified: trunk/documents/users_guide/ocean/namelist_table_documentation.tex
===================================================================
--- trunk/documents/users_guide/ocean/namelist_table_documentation.tex 2013-03-15 14:09:09 UTC (rev 2617)
+++ trunk/documents/users_guide/ocean/namelist_table_documentation.tex 2013-03-15 15:30:08 UTC (rev 2618)
@@ -11,15 +11,15 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_do_restart]{config\_do\_restart} & Flag that controls starting simulation from a restart, or inital conditions that are built into the input file. \\
+ \hyperref[subsec:nm_sec_config_do_restart]{config\_do\_restart} & Determines if the initial conditions should be read from a restart file, or an input file. \\
\hline
- \hyperref[subsec:nm_sec_config_start_time]{config\_start\_time} & Time stamp that describes the initial time of the simulation. \\
+ \hyperref[subsec:nm_sec_config_start_time]{config\_start\_time} & Timestamp describing the initial time of the simulation. If it is set to 'file', the initial time is read from restart\_timestamp. \\
\hline
- \hyperref[subsec:nm_sec_config_stop_time]{config\_stop\_time} & Time stamp that describes the ending time of the simulation. If the value is 'none', config\_stop\_time is inferred using config\_run\_duration and config\_start\_time. \\
+ \hyperref[subsec:nm_sec_config_stop_time]{config\_stop\_time} & Timestamp descriping the final time of the simulation. If it is set to 'none' the final time is determined from config\_start\_time and config\_run\_duration. \\
\hline
- \hyperref[subsec:nm_sec_config_run_duration]{config\_run\_duration} & Time stamp that describes the amount of time in the simulation. If the value is 'none', config\_run\_duration is inferred using config\_start\_time and config\_stop\_time. \\
+ \hyperref[subsec:nm_sec_config_run_duration]{config\_run\_duration} & Timestamp describing the length of the simulation. If it is set to 'none' the duraction is determined from config\_start\_time and config\_stop\_time. config\_run\_duration overrides inconsistent values of config\_stop\_time. \\
\hline
- \hyperref[subsec:nm_sec_config_calendar_type]{config\_calendar\_type} & Calendar type that defines the calendar used in the simualtion. \\
+ \hyperref[subsec:nm_sec_config_calendar_type]{config\_calendar\_type} & Selection of the type of calendar that should be used in the simulation. \\
\hline
\end{longtable}
\end{center}
@@ -33,27 +33,27 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_input_name]{config\_input\_name} & String that defines the full or relative path to the input file. \\
+ \hyperref[subsec:nm_sec_config_input_name]{config\_input\_name} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_output_name]{config\_output\_name} & String that defines the full or relative path to where the output file(s) will be written. \\
+ \hyperref[subsec:nm_sec_config_output_name]{config\_output\_name} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_restart_name]{config\_restart\_name} & String that defines the full or relative path to where the restart file(s) will be read and written. \\
+ \hyperref[subsec:nm_sec_config_restart_name]{config\_restart\_name} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_restart_interval]{config\_restart\_interval} & Time stamp that defines how often restart files should be written. \\
+ \hyperref[subsec:nm_sec_config_restart_interval]{config\_restart\_interval} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_output_interval]{config\_output\_interval} & Time stamp that defines how often output files should be written. \\
+ \hyperref[subsec:nm_sec_config_output_interval]{config\_output\_interval} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_stats_interval]{config\_stats\_interval} & Time stamp that defines how often statistics output should be written. \\
+ \hyperref[subsec:nm_sec_config_stats_interval]{config\_stats\_interval} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_write_stats_on_startup]{config\_write\_stats\_on\_startup} & Flag that defines if statistics should be computed using the initial conditions. \\
+ \hyperref[subsec:nm_sec_config_write_stats_on_startup]{config\_write\_stats\_on\_startup} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_write_output_on_startup]{config\_write\_output\_on\_startup} & Flag that defines if output should be performed using the initial conditions. \\
+ \hyperref[subsec:nm_sec_config_write_output_on_startup]{config\_write\_output\_on\_startup} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_frames_per_outfile]{config\_frames\_per\_outfile} & Number of time slices in an output file. \\
+ \hyperref[subsec:nm_sec_config_frames_per_outfile]{config\_frames\_per\_outfile} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_pio_num_iotasks]{config\_pio\_num\_iotasks} & Number of iotasks used with PIO in the simulation. \\
+ \hyperref[subsec:nm_sec_config_pio_num_iotasks]{config\_pio\_num\_iotasks} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_pio_stride]{config\_pio\_stride} & Stride of PIO iotasks in the simulation. \\
+ \hyperref[subsec:nm_sec_config_pio_stride]{config\_pio\_stride} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -68,9 +68,9 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_dt]{config\_dt} & Length of a single time step. \\
+ \hyperref[subsec:nm_sec_config_dt]{config\_dt} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_time_integrator]{config\_time\_integrator} & Time integration scheme to be used for the simulation. \\
+ \hyperref[subsec:nm_sec_config_time_integrator]{config\_time\_integrator} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -85,15 +85,15 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_num_halos]{config\_num\_halos} & Defines the number of halos extending outward from owned cells. \\
+ \hyperref[subsec:nm_sec_config_num_halos]{config\_num\_halos} & Determines the number of halo cells extending from a blocks owned cells (Called the 0-Halo). The default of 3 is the minimum that can be used with monotonic advection. \\
\hline
- \hyperref[subsec:nm_sec_config_vert_coord_movement]{config\_vert\_coord\_movement} & Defines the movement of the vertical coordinate. \\
+ \hyperref[subsec:nm_sec_config_vert_coord_movement]{config\_vert\_coord\_movement} & Determines the vertical coordinate movement type. 'uniform\_stretching' distrubtes SSH perturbations through all vertical levels, 'fixed' places them all in the top level, 'user\_specified' allows the input file to determine the distribution, and 'isopycnal' causes levels to be pure isopycnal. \\
\hline
- \hyperref[subsec:nm_sec_config_alter_ICs_for_pbcs]{config\_alter\_ICs\_for\_pbcs} & Flag that controls how or if partial bottom cells are used. \\
+ \hyperref[subsec:nm_sec_config_alter_ICs_for_pbcs]{config\_alter\_ICs\_for\_pbcs} & Determines the method of alteration for partial bottom cells. 'zlevel\_pbcs\_on' alters the initial conditions for partial bottom cells, 'zlevel\_pbcs\_off' alters the initial conditions to have full cells everwhere, and 'off' does nothing to the initial conditions. \\
\hline
- \hyperref[subsec:nm_sec_config_min_pbc_fraction]{config\_min\_pbc\_fraction} & Defines the minimum allowed fraction for partial bottom cells. \\
+ \hyperref[subsec:nm_sec_config_min_pbc_fraction]{config\_min\_pbc\_fraction} & Determines the minimum fraction of a cell altering the initial conditions can create. \\
\hline
- \hyperref[subsec:nm_sec_config_check_ssh_consistency]{config\_check\_ssh\_consistency} & Flag that enables an initial consistency check for sea surface height. \\
+ \hyperref[subsec:nm_sec_config_check_ssh_consistency]{config\_check\_ssh\_consistency} & Enables a check to determine if the SSH is consistent across relevant variables. \\
\hline
\end{longtable}
\end{center}
@@ -108,13 +108,13 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_block_decomp_file_prefix]{config\_block\_decomp\_file\_prefix} & String that defines the full or relative path and prefix for the block decomposition files. \\
+ \hyperref[subsec:nm_sec_config_block_decomp_file_prefix]{config\_block\_decomp\_file\_prefix} & Defines the prefix for the block decomposition file. Can include a path. The number of blocks is appended to the end of the prefix at run-time. \\
\hline
- \hyperref[subsec:nm_sec_config_number_of_blocks]{config\_number\_of\_blocks} & The number of computational blocks in the simulation. \\
+ \hyperref[subsec:nm_sec_config_number_of_blocks]{config\_number\_of\_blocks} & Determines the number of blocks a simulation should be run with. If it is set to 0, the number of blocks is the same as the number of MPI tasks at run-time. \\
\hline
- \hyperref[subsec:nm_sec_config_explicit_proc_decomp]{config\_explicit\_proc\_decomp} & Flag that enables/disables the use of a config\_proc\_decomp\_file to distribute computational blocks through processors. \\
+ \hyperref[subsec:nm_sec_config_explicit_proc_decomp]{config\_explicit\_proc\_decomp} & Determines if an explicit processor decomposition should be used. This is only useful if multiple blocks per processor are used. \\
\hline
- \hyperref[subsec:nm_sec_config_proc_decomp_file_prefix]{config\_proc\_decomp\_file\_prefix} & String that defines the fille or relative path and prefix for the processor decomposition files. \\
+ \hyperref[subsec:nm_sec_config_proc_decomp_file_prefix]{config\_proc\_decomp\_file\_prefix} & Defines the prefix for the processor decomposition file. This file is only read if config\_explicit\_proc\_decomp is .true. The number of processors is appended to the end of the prefix at run-time. \\
\hline
\end{longtable}
\end{center}
@@ -129,11 +129,11 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_hmix_ScaleWithMesh]{config\_hmix\_ScaleWithMesh} & Flag that controls if horizontal mixing parameters scale with the mesh density. \\
+ \hyperref[subsec:nm_sec_config_hmix_ScaleWithMesh]{config\_hmix\_ScaleWithMesh} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_visc_vorticity_term]{config\_visc\_vorticity\_term} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_visc_vorticity_term]{config\_visc\_vorticity\_term} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_apvm_scale_factor]{config\_apvm\_scale\_factor} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_apvm_scale_factor]{config\_apvm\_scale\_factor} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -148,15 +148,15 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_use_mom_del2]{config\_use\_mom\_del2} & Flag that controls if del2 will be used for horizontal mixing of momentum. \\
+ \hyperref[subsec:nm_sec_config_use_mom_del2]{config\_use\_mom\_del2} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_use_tracer_del2]{config\_use\_tracer\_del2} & Flag that controls if del2 will be used for horizontal mixing of tracers. \\
+ \hyperref[subsec:nm_sec_config_use_tracer_del2]{config\_use\_tracer\_del2} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_mom_del2]{config\_mom\_del2} & Value of del2 coefficient for horizontal mixing of momentum. \\
+ \hyperref[subsec:nm_sec_config_mom_del2]{config\_mom\_del2} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_tracer_del2]{config\_tracer\_del2} & Value of del2 coefficient for horizontal mixing of tracers. \\
+ \hyperref[subsec:nm_sec_config_tracer_del2]{config\_tracer\_del2} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_vorticity_del2_scale]{config\_vorticity\_del2\_scale} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_vorticity_del2_scale]{config\_vorticity\_del2\_scale} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -171,15 +171,15 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_use_mom_del4]{config\_use\_mom\_del4} & Flag that controls if del4 will be used for horizontal mixing of momentum. \\
+ \hyperref[subsec:nm_sec_config_use_mom_del4]{config\_use\_mom\_del4} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_use_tracer_del4]{config\_use\_tracer\_del4} & Flag that controls if del4 will be used for horizontal mixing of tracers. \\
+ \hyperref[subsec:nm_sec_config_use_tracer_del4]{config\_use\_tracer\_del4} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_mom_del4]{config\_mom\_del4} & Value of del4 coefficient for horizontal mixing of momentum. \\
+ \hyperref[subsec:nm_sec_config_mom_del4]{config\_mom\_del4} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_tracer_del4]{config\_tracer\_del4} & Value of del4 coefficient for horizontal mixing of tracers. \\
+ \hyperref[subsec:nm_sec_config_tracer_del4]{config\_tracer\_del4} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_vorticity_del4_scale]{config\_vorticity\_del4\_scale} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_vorticity_del4_scale]{config\_vorticity\_del4\_scale} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -194,13 +194,13 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_use_Leith_del2]{config\_use\_Leith\_del2} & Flag that controls if the Leith closure will be used for horizontal mixing. \\
+ \hyperref[subsec:nm_sec_config_use_Leith_del2]{config\_use\_Leith\_del2} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_Leith_parameter]{config\_Leith\_parameter} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_Leith_parameter]{config\_Leith\_parameter} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_Leith_dx]{config\_Leith\_dx} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_Leith_dx]{config\_Leith\_dx} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_Leith_visc2_max]{config\_Leith\_visc2\_max} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_Leith_visc2_max]{config\_Leith\_visc2\_max} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -214,9 +214,9 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_h_kappa]{config\_h\_kappa} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_h_kappa]{config\_h\_kappa} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_h_kappa_q]{config\_h\_kappa\_q} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_h_kappa_q]{config\_h\_kappa\_q} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -231,9 +231,9 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_Rayleigh_friction]{config\_Rayleigh\_friction} & Flag that controls if Rayleigh friction will be used in the simulation. \\
+ \hyperref[subsec:nm_sec_config_Rayleigh_friction]{config\_Rayleigh\_friction} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_Rayleigh_damping_coeff]{config\_Rayleigh\_damping\_coeff} & Value of the Rayleigh friction coefficient. \\
+ \hyperref[subsec:nm_sec_config_Rayleigh_damping_coeff]{config\_Rayleigh\_damping\_coeff} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -247,9 +247,9 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_convective_visc]{config\_convective\_visc} & Value of coefficient for convective vertical mixing of momentum. \\
+ \hyperref[subsec:nm_sec_config_convective_visc]{config\_convective\_visc} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_convective_diff]{config\_convective\_diff} & Value of coefficient for convective vertical mixing of tracers. \\
+ \hyperref[subsec:nm_sec_config_convective_diff]{config\_convective\_diff} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -263,13 +263,13 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_use_const_visc]{config\_use\_const\_visc} & Flag that controls if constant vertical mixing of momentum is used. \\
+ \hyperref[subsec:nm_sec_config_use_const_visc]{config\_use\_const\_visc} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_use_const_diff]{config\_use\_const\_diff} & Flag that controls if constant vertical mixing of tracers is used. \\
+ \hyperref[subsec:nm_sec_config_use_const_diff]{config\_use\_const\_diff} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_vert_visc]{config\_vert\_visc} & Value of coefficient for constant vertical mixing of momentum. \\
+ \hyperref[subsec:nm_sec_config_vert_visc]{config\_vert\_visc} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_vert_diff]{config\_vert\_diff} & Value of coefficient for constant vertical mixing of tracers. \\
+ \hyperref[subsec:nm_sec_config_vert_diff]{config\_vert\_diff} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -283,15 +283,15 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_use_rich_visc]{config\_use\_rich\_visc} & Flag that controls if Richarson number vertical mixing of momentum is used. \\
+ \hyperref[subsec:nm_sec_config_use_rich_visc]{config\_use\_rich\_visc} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_use_rich_diff]{config\_use\_rich\_diff} & Flag that controls if Richarson number vertical mixing of tracers is used. \\
+ \hyperref[subsec:nm_sec_config_use_rich_diff]{config\_use\_rich\_diff} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_bkrd_vert_visc]{config\_bkrd\_vert\_visc} & Value of coefficient for Richardson number vertical mixing of momentum. \\
+ \hyperref[subsec:nm_sec_config_bkrd_vert_visc]{config\_bkrd\_vert\_visc} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_bkrd_vert_diff]{config\_bkrd\_vert\_diff} & Value of coefficient for Richardson number vertical mixing of tracers. \\
+ \hyperref[subsec:nm_sec_config_bkrd_vert_diff]{config\_bkrd\_vert\_diff} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_rich_mix]{config\_rich\_mix} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_rich_mix]{config\_rich\_mix} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -305,21 +305,21 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_use_tanh_visc]{config\_use\_tanh\_visc} & Flag that controls if hyperbolic tangent vertical mixing of momentum is used. \\
+ \hyperref[subsec:nm_sec_config_use_tanh_visc]{config\_use\_tanh\_visc} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_use_tanh_diff]{config\_use\_tanh\_diff} & Flag that controls if hyperbolic tangent vertical mixing of tracers is used. \\
+ \hyperref[subsec:nm_sec_config_use_tanh_diff]{config\_use\_tanh\_diff} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_max_visc_tanh]{config\_max\_visc\_tanh} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_max_visc_tanh]{config\_max\_visc\_tanh} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_min_visc_tanh]{config\_min\_visc\_tanh} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_min_visc_tanh]{config\_min\_visc\_tanh} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_max_diff_tanh]{config\_max\_diff\_tanh} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_max_diff_tanh]{config\_max\_diff\_tanh} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_min_diff_tanh]{config\_min\_diff\_tanh} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_min_diff_tanh]{config\_min\_diff\_tanh} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_zMid_tanh]{config\_zMid\_tanh} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_zMid_tanh]{config\_zMid\_tanh} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_zWidth_tanh]{config\_zWidth\_tanh} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_zWidth_tanh]{config\_zWidth\_tanh} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -334,13 +334,13 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_use_monthly_forcing]{config\_use\_monthly\_forcing} & Flag that controls if monthly forcing is used in the simulation. \\
+ \hyperref[subsec:nm_sec_config_use_monthly_forcing]{config\_use\_monthly\_forcing} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_restoreTS]{config\_restoreTS} & Flag that controls is temperature and salinity restoring is used in the simulation. \\
+ \hyperref[subsec:nm_sec_config_restoreTS]{config\_restoreTS} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_restoreT_timescale]{config\_restoreT\_timescale} & Value in days of the restoring timescale for temperature. \\
+ \hyperref[subsec:nm_sec_config_restoreT_timescale]{config\_restoreT\_timescale} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_restoreS_timescale]{config\_restoreS\_timescale} & Value in days of the restoring timescale for salinity. \\
+ \hyperref[subsec:nm_sec_config_restoreS_timescale]{config\_restoreS\_timescale} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -355,15 +355,15 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_vert_tracer_adv]{config\_vert\_tracer\_adv} & {\bf \color{red} DEPRECATED} \\
+ \hyperref[subsec:nm_sec_config_vert_tracer_adv]{config\_vert\_tracer\_adv} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_vert_tracer_adv_order]{config\_vert\_tracer\_adv\_order} & Order of vertical reconstruction of tracers used for vertical advection. \\
+ \hyperref[subsec:nm_sec_config_vert_tracer_adv_order]{config\_vert\_tracer\_adv\_order} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_horiz_tracer_adv_order]{config\_horiz\_tracer\_adv\_order} & Order of horizontal reconstruction of tracers used for horizontal advection. \\
+ \hyperref[subsec:nm_sec_config_horiz_tracer_adv_order]{config\_horiz\_tracer\_adv\_order} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_coef_3rd_order]{config\_coef\_3rd\_order} & Blending coefficient for 3rd and 4th order horizontal reconstruction of tracers. \\
+ \hyperref[subsec:nm_sec_config_coef_3rd_order]{config\_coef\_3rd\_order} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_monotonic]{config\_monotonic} & Flag that controls if monotonic advection is used in the simulation. \\
+ \hyperref[subsec:nm_sec_config_monotonic]{config\_monotonic} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -378,7 +378,7 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_bottom_drag_coeff]{config\_bottom\_drag\_coeff} & Value of the bottom drag coefficient. \\
+ \hyperref[subsec:nm_sec_config_bottom_drag_coeff]{config\_bottom\_drag\_coeff} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -393,9 +393,9 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_pressure_gradient_type]{config\_pressure\_gradient\_type} & String that defines the type of pressure gradient used in the simulation. \\
+ \hyperref[subsec:nm_sec_config_pressure_gradient_type]{config\_pressure\_gradient\_type} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_rho0]{config\_rho0} & Value of the reference density for the Boussineq approximation. \\
+ \hyperref[subsec:nm_sec_config_rho0]{config\_rho0} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -410,7 +410,7 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_eos_type]{config\_eos\_type} & String that defines the equation of state used in the simulation. \\
+ \hyperref[subsec:nm_sec_config_eos_type]{config\_eos\_type} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -425,15 +425,15 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_eos_linear_alpha]{config\_eos\_linear\_alpha} & Value of temperature expansion coefficient used in the linear equation of state. \\
+ \hyperref[subsec:nm_sec_config_eos_linear_alpha]{config\_eos\_linear\_alpha} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_eos_linear_beta]{config\_eos\_linear\_beta} & Value of salinity expansion coefficient used in the linear equation of state. \\
+ \hyperref[subsec:nm_sec_config_eos_linear_beta]{config\_eos\_linear\_beta} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_eos_linear_Tref]{config\_eos\_linear\_Tref} & Value of the reference temperature used in the linear equation of state. \\
+ \hyperref[subsec:nm_sec_config_eos_linear_Tref]{config\_eos\_linear\_Tref} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_eos_linear_Sref]{config\_eos\_linear\_Sref} & Value of the reference salinity used in the linear equation of state. \\
+ \hyperref[subsec:nm_sec_config_eos_linear_Sref]{config\_eos\_linear\_Sref} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_eos_linear_rhoref]{config\_eos\_linear\_rhoref} & Value of the reference density used in the linear equation of state. \\
+ \hyperref[subsec:nm_sec_config_eos_linear_rhoref]{config\_eos\_linear\_rhoref} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -448,29 +448,29 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_n_ts_iter]{config\_n\_ts\_iter} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_n_ts_iter]{config\_n\_ts\_iter} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_n_bcl_iter_beg]{config\_n\_bcl\_iter\_beg} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_n_bcl_iter_beg]{config\_n\_bcl\_iter\_beg} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_n_bcl_iter_mid]{config\_n\_bcl\_iter\_mid} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_n_bcl_iter_mid]{config\_n\_bcl\_iter\_mid} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_n_bcl_iter_end]{config\_n\_bcl\_iter\_end} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_n_bcl_iter_end]{config\_n\_bcl\_iter\_end} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_n_btr_subcycles]{config\_n\_btr\_subcycles} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_n_btr_subcycles]{config\_n\_btr\_subcycles} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_n_btr_cor_iter]{config\_n\_btr\_cor\_iter} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_n_btr_cor_iter]{config\_n\_btr\_cor\_iter} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_u_correction]{config\_u\_correction} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_u_correction]{config\_u\_correction} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_btr_subcycle_loop_factor]{config\_btr\_subcycle\_loop\_factor} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_btr_subcycle_loop_factor]{config\_btr\_subcycle\_loop\_factor} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_btr_gam1_uWt1]{config\_btr\_gam1\_uWt1} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_btr_gam1_uWt1]{config\_btr\_gam1\_uWt1} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_btr_gam2_SSHWt1]{config\_btr\_gam2\_SSHWt1} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_btr_gam2_SSHWt1]{config\_btr\_gam2\_SSHWt1} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_btr_gam3_uWt2]{config\_btr\_gam3\_uWt2} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_btr_gam3_uWt2]{config\_btr\_gam3\_uWt2} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_btr_solve_SSH2]{config\_btr\_solve\_SSH2} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_btr_solve_SSH2]{config\_btr\_solve\_SSH2} & {\bf \color{red} MISSING} \\
\hline
\end{longtable}
\end{center}
@@ -485,45 +485,45 @@
{\bf Name} & {\bf Description} \\
\hline
\hline
- \hyperref[subsec:nm_sec_config_check_zlevel_consistency]{config\_check\_zlevel\_consistency} & Flag that enables a zlevel consistency check on initialization. \\
+ \hyperref[subsec:nm_sec_config_check_zlevel_consistency]{config\_check\_zlevel\_consistency} & Enables a run-time check for consistency for a zlevel grid. Ensures relevant variables correctly define the bottom of the ocean. \\
\hline
- \hyperref[subsec:nm_sec_config_filter_btr_mode]{config\_filter\_btr\_mode} & Flag that enables the filtering of the barotropic mode. \\
+ \hyperref[subsec:nm_sec_config_filter_btr_mode]{config\_filter\_btr\_mode} & Enables filtering of the barotropic mode. \\
\hline
- \hyperref[subsec:nm_sec_config_prescribe_velocity]{config\_prescribe\_velocity} & Flag that enables prescribed velocities, read from the input file, that remain constant throughout the simulation. \\
+ \hyperref[subsec:nm_sec_config_prescribe_velocity]{config\_prescribe\_velocity} & Enables a prescribed velocity field. This velocity field is read on input, and remains constant through a simulation. \\
\hline
- \hyperref[subsec:nm_sec_config_prescribe_thickness]{config\_prescribe\_thickness} & {\bf \color{red} MISSING} \\
+ \hyperref[subsec:nm_sec_config_prescribe_thickness]{config\_prescribe\_thickness} & Enables a prescribed thickness field. This thickness field is read on input, and remains constant through a simulation. \\
\hline
- \hyperref[subsec:nm_sec_config_include_KE_vertex]{config\_include\_KE\_vertex} & {\bf \color{red} DEFINE} \\
+ \hyperref[subsec:nm_sec_config_include_KE_vertex]{config\_include\_KE\_vertex} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:nm_sec_config_check_tracer_monotonicity]{config\_check\_tracer\_monotonicity} & Flag that enables the check for monotonicity of tracers. Only available if config\_monotoic is true. \\
+ \hyperref[subsec:nm_sec_config_check_tracer_monotonicity]{config\_check\_tracer\_monotonicity} & Enables a change on tracer monotonicity at the end of the monotonic advection routine. Only used if config\_monotonic is set to .true. \\
\hline
- \hyperref[subsec:nm_sec_config_disable_h_all_tend]{config\_disable\_h\_all\_tend} & Flag that disables all thickness tendencies. \\
+ \hyperref[subsec:nm_sec_config_disable_h_all_tend]{config\_disable\_h\_all\_tend} & Disables all tendencies on the thickness field. \\
\hline
- \hyperref[subsec:nm_sec_config_disable_h_hadv]{config\_disable\_h\_hadv} & Flag that disables horizontal advection of thickness. \\
+ \hyperref[subsec:nm_sec_config_disable_h_hadv]{config\_disable\_h\_hadv} & Disable tendencies on the thickness field from horizontal advection. \\
\hline
- \hyperref[subsec:nm_sec_config_disable_h_vadv]{config\_disable\_h\_vadv} & Flag that disables vertical advection of thickness. \\
+ \hyperref[subsec:nm_sec_config_disable_h_vadv]{config\_disable\_h\_vadv} & Disables tendencies on the thickness field from vertical advection. \\
\hline
- \hyperref[subsec:nm_sec_config_disable_u_all_tend]{config\_disable\_u\_all\_tend} & Flag that disables all velocitiy tendencies. \\
+ \hyperref[subsec:nm_sec_config_disable_u_all_tend]{config\_disable\_u\_all\_tend} & Disables all tendencies on the velocity field. \\
\hline
- \hyperref[subsec:nm_sec_config_disable_u_coriolis]{config\_disable\_u\_coriolis} & Flag that disables Coriolis tendencies of velocity. \\
+ \hyperref[subsec:nm_sec_config_disable_u_coriolis]{config\_disable\_u\_coriolis} & Diables tendencies on the velocity field from the Coriolis force. \\
\hline
- \hyperref[subsec:nm_sec_config_disable_u_pgrad]{config\_disable\_u\_pgrad} & Flag that disables pressure gradient tendencies of velocity. \\
+ \hyperref[subsec:nm_sec_config_disable_u_pgrad]{config\_disable\_u\_pgrad} & Disables tendencies on the velocity field from the horizontal pressure gradient. \\
\hline
- \hyperref[subsec:nm_sec_config_disable_u_hmix]{config\_disable\_u\_hmix} & Flag that disables horizontal mixing tendencies of velocity. \\
+ \hyperref[subsec:nm_sec_config_disable_u_hmix]{config\_disable\_u\_hmix} & Disables tendencies on the velocity field from horizontal mixing. \\
\hline
- \hyperref[subsec:nm_sec_config_disable_u_windstress]{config\_disable\_u\_windstress} & Flag that disables windstress tendencies of velocity. \\
+ \hyperref[subsec:nm_sec_config_disable_u_windstress]{config\_disable\_u\_windstress} & Disables tendencies on the velocity field from horizontal wind stress. \\
\hline
- \hyperref[subsec:nm_sec_config_disable_u_vmix]{config\_disable\_u\_vmix} & Flag that disables vertical mixing of velocity. \\
+ \hyperref[subsec:nm_sec_config_disable_u_vmix]{config\_disable\_u\_vmix} & Disables tendencies on the velocity field from vertical mixing. \\
\hline
- \hyperref[subsec:nm_sec_config_disable_u_vadv]{config\_disable\_u\_vadv} & Flag that disables vertical advection tendencies of velocity. \\
+ \hyperref[subsec:nm_sec_config_disable_u_vadv]{config\_disable\_u\_vadv} & Disables tendencies on the velocity field from vertical advection. \\
\hline
- \hyperref[subsec:nm_sec_config_disable_tr_all_tend]{config\_disable\_tr\_all\_tend} & Flag that disables all tracer tendencies. \\
+ \hyperref[subsec:nm_sec_config_disable_tr_all_tend]{config\_disable\_tr\_all\_tend} & Disables all tendencies on tracer fields. \\
\hline
- \hyperref[subsec:nm_sec_config_disable_tr_adv]{config\_disable\_tr\_adv} & Flag that disables advection tendencites of tracers. \\
+ \hyperref[subsec:nm_sec_config_disable_tr_adv]{config\_disable\_tr\_adv} & Disables tendencies on tracer fields from advection, both horizontal and vertical. \\
\hline
- \hyperref[subsec:nm_sec_config_disable_tr_hmix]{config\_disable\_tr\_hmix} & Flag that disables horizontal mixing tendencites of tracers. \\
+ \hyperref[subsec:nm_sec_config_disable_tr_hmix]{config\_disable\_tr\_hmix} & Disables tendencies on tracer fields from horizontal mixing. \\
\hline
- \hyperref[subsec:nm_sec_config_disable_tr_vmix]{config\_disable\_tr\_vmix} & Flag taht disables vertical mixing of tracers. \\
+ \hyperref[subsec:nm_sec_config_disable_tr_vmix]{config\_disable\_tr\_vmix} & Disables tendencies on tracer fields from vertical mixing. \\
\hline
\end{longtable}
\end{center}
Modified: trunk/documents/users_guide/ocean/variable_section_documentation.tex
===================================================================
--- trunk/documents/users_guide/ocean/variable_section_documentation.tex 2013-03-15 14:09:09 UTC (rev 2617)
+++ trunk/documents/users_guide/ocean/variable_section_documentation.tex 2013-03-15 15:30:08 UTC (rev 2618)
@@ -3,24 +3,32 @@
Embedded links point to information in chapter \ref{chap:variable_tables}
\section[state]{\hyperref[sec:var_tab_state]{state}}
\label{sec:var_sec_state}
-\subsection[xtime]{\hyperref[sec:var_tab_state]{xtime}}
-\label{subsec:var_sec_state_xtime}
+\subsection[temperature]{\hyperref[sec:var_tab_state]{temperature}}
+\label{subsec:var_sec_state_temperature}
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & string \\
+ Type: & real \\
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
- \caption{xtime: {\bf \color{red} MISSING}}
+ Default Streams: & Input Restart Output \\
+ \hline
+ Index in tracers Array: & domain \% blocklist \% state \% index\_temperature \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% tracers \\
+ \hline
+ Array Group: & dynamics \\
+ \hline
+ \caption{temperature: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
-\subsection[u]{\hyperref[sec:var_tab_state]{u}}
-\label{subsec:var_sec_state_u}
+\subsection[salinity]{\hyperref[sec:var_tab_state]{salinity}}
+\label{subsec:var_sec_state_salinity}
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
@@ -28,15 +36,23 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
- \caption{u: {\bf \color{red} MISSING}}
+ Default Streams: & Input Restart Output \\
+ \hline
+ Index in tracers Array: & domain \% blocklist \% state \% index\_salinity \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% tracers \\
+ \hline
+ Array Group: & dynamics \\
+ \hline
+ \caption{salinity: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
-\subsection[h]{\hyperref[sec:var_tab_state]{h}}
-\label{subsec:var_sec_state_h}
+\subsection[tracer1]{\hyperref[sec:var_tab_state]{tracer1}}
+\label{subsec:var_sec_state_tracer1}
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
@@ -44,31 +60,43 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
- \caption{h: {\bf \color{red} MISSING}}
+ Default Streams: & Input Restart Output \\
+ \hline
+ Index in tracers Array: & domain \% blocklist \% state \% index\_tracer1 \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% tracers \\
+ \hline
+ Array Group: & testing \\
+ \hline
+ \caption{tracer1: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
-\subsection[rho]{\hyperref[sec:var_tab_state]{rho}}
-\label{subsec:var_sec_state_rho}
+\subsection[xtime]{\hyperref[sec:var_tab_state]{xtime}}
+\label{subsec:var_sec_state_xtime}
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Type: & real \\
+ Type: & text \\
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & Time \\
\hline
Persistence: & persistent \\
\hline
- \caption{rho: {\bf \color{red} MISSING}}
+ Default Streams: & Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% xtime \\
+ \hline
+ \caption{xtime: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
-\subsection[temperature]{\hyperref[sec:var_tab_state]{temperature}}
-\label{subsec:var_sec_state_temperature}
+\subsection[u]{\hyperref[sec:var_tab_state]{u}}
+\label{subsec:var_sec_state_u}
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
@@ -76,15 +104,19 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
- \caption{temperature: {\bf \color{red} MISSING}}
+ Default Streams: & Input Restart \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% u \\
+ \hline
+ \caption{u: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
-\subsection[salinity]{\hyperref[sec:var_tab_state]{salinity}}
-\label{subsec:var_sec_state_salinity}
+\subsection[h]{\hyperref[sec:var_tab_state]{h}}
+\label{subsec:var_sec_state_h}
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
@@ -92,15 +124,19 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
- \caption{salinity: {\bf \color{red} MISSING}}
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% h \\
+ \hline
+ \caption{h: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
-\subsection[tracer1]{\hyperref[sec:var_tab_state]{tracer1}}
-\label{subsec:var_sec_state_tracer1}
+\subsection[rho]{\hyperref[sec:var_tab_state]{rho}}
+\label{subsec:var_sec_state_rho}
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
@@ -108,11 +144,15 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
- \caption{tracer1: {\bf \color{red} MISSING}}
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% rho \\
+ \hline
+ \caption{rho: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\subsection[uBtr]{\hyperref[sec:var_tab_state]{uBtr}}
@@ -124,10 +164,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges Time ) \\
+ Dimension: & nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Restart \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uBtr \\
+ \hline
\caption{uBtr: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -140,10 +184,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells Time ) \\
+ Dimension: & nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% ssh \\
+ \hline
\caption{ssh: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -156,10 +204,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges Time ) \\
+ Dimension: & nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uBtrSubcycle \\
+ \hline
\caption{uBtrSubcycle: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -172,10 +224,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells Time ) \\
+ Dimension: & nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% sshSubcycle \\
+ \hline
\caption{sshSubcycle: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -188,10 +244,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges Time ) \\
+ Dimension: & nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% FBtr \\
+ \hline
\caption{FBtr: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -204,10 +264,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges Time ) \\
+ Dimension: & nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% GBtrForcing \\
+ \hline
\caption{GBtrForcing: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -220,10 +284,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uBcl \\
+ \hline
\caption{uBcl: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -236,10 +304,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% zMid \\
+ \hline
\caption{zMid: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -252,10 +324,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% v \\
+ \hline
\caption{v: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -268,10 +344,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uTransport \\
+ \hline
\caption{uTransport: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -284,10 +364,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uBolusGM \\
+ \hline
\caption{uBolusGM: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -300,10 +384,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uBolusGMX \\
+ \hline
\caption{uBolusGMX: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -316,10 +404,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uBolusGMY \\
+ \hline
\caption{uBolusGMY: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -332,10 +424,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uBolusGMZ \\
+ \hline
\caption{uBolusGMZ: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -348,10 +444,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uBolusGMZonal \\
+ \hline
\caption{uBolusGMZonal: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -364,10 +464,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uBolusGMMeridional \\
+ \hline
\caption{uBolusGMMeridional: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -380,10 +484,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% hEddyFlux \\
+ \hline
\caption{hEddyFlux: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -396,10 +504,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% h\_kappa \\
+ \hline
\caption{h\_kappa: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -412,10 +524,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% h\_kappa\_q \\
+ \hline
\caption{h\_kappa\_q: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -428,10 +544,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% divergence \\
+ \hline
\caption{divergence: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -444,10 +564,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nVertices Time ) \\
+ Dimension: & nVertLevels nVertices Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% vorticity \\
+ \hline
\caption{vorticity: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -460,10 +584,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% Vor\_edge \\
+ \hline
\caption{Vor\_edge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -476,10 +604,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% h\_edge \\
+ \hline
\caption{h\_edge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -492,10 +624,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nVertices Time ) \\
+ Dimension: & nVertLevels nVertices Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% h\_vertex \\
+ \hline
\caption{h\_vertex: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -508,10 +644,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% ke \\
+ \hline
\caption{ke: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -524,10 +664,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nVertices Time ) \\
+ Dimension: & nVertLevels nVertices Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% kev \\
+ \hline
\caption{kev: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -540,10 +684,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% kevc \\
+ \hline
\caption{kevc: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -556,10 +704,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% ke\_edge \\
+ \hline
\caption{ke\_edge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -572,10 +724,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nVertices Time ) \\
+ Dimension: & nVertLevels nVertices Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% Vor\_vertex \\
+ \hline
\caption{Vor\_vertex: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -588,10 +744,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% Vor\_cell \\
+ \hline
\caption{Vor\_cell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -604,10 +764,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uReconstructX \\
+ \hline
\caption{uReconstructX: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -620,10 +784,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uReconstructY \\
+ \hline
\caption{uReconstructY: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -636,10 +804,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uReconstructZ \\
+ \hline
\caption{uReconstructZ: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -652,10 +824,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uReconstructZonal \\
+ \hline
\caption{uReconstructZonal: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -668,10 +844,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uReconstructMeridional \\
+ \hline
\caption{uReconstructMeridional: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -684,10 +864,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uSrcReconstructX \\
+ \hline
\caption{uSrcReconstructX: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -700,10 +884,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uSrcReconstructY \\
+ \hline
\caption{uSrcReconstructY: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -716,10 +904,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uSrcReconstructZ \\
+ \hline
\caption{uSrcReconstructZ: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -732,10 +924,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uSrcReconstructZonal \\
+ \hline
\caption{uSrcReconstructZonal: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -748,10 +944,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% uSrcReconstructMeridional \\
+ \hline
\caption{uSrcReconstructMeridional: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -764,10 +964,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% MontPot \\
+ \hline
\caption{MontPot: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -780,10 +984,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% pressure \\
+ \hline
\caption{pressure: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -796,10 +1004,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevelsP1 nCells Time ) \\
+ Dimension: & nVertLevelsP1 nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% wTop \\
+ \hline
\caption{wTop: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -812,10 +1024,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevelsP1 nCells Time ) \\
+ Dimension: & nVertLevelsP1 nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% vertVelocityTop \\
+ \hline
\caption{vertVelocityTop: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -828,10 +1044,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% rhoDisplaced \\
+ \hline
\caption{rhoDisplaced: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -844,10 +1064,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% BruntVaisalaFreqTop \\
+ \hline
\caption{BruntVaisalaFreqTop: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -860,10 +1084,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% viscosity \\
+ \hline
\caption{viscosity: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -876,10 +1104,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% vh \\
+ \hline
\caption{vh: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -892,10 +1124,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nVertices Time ) \\
+ Dimension: & nVertLevels nVertices Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% circulation \\
+ \hline
\caption{circulation: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -908,10 +1144,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% gradVor\_t \\
+ \hline
\caption{gradVor\_t: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -924,10 +1164,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% gradVor\_n \\
+ \hline
\caption{gradVor\_n: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -940,10 +1184,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( Time ) \\
+ Dimension: & Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% areaCellGlobal \\
+ \hline
\caption{areaCellGlobal: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -956,10 +1204,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( Time ) \\
+ Dimension: & Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% areaEdgeGlobal \\
+ \hline
\caption{areaEdgeGlobal: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -972,10 +1224,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( Time ) \\
+ Dimension: & Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% areaTriangleGlobal \\
+ \hline
\caption{areaTriangleGlobal: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -988,10 +1244,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( Time ) \\
+ Dimension: & Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% volumeCellGlobal \\
+ \hline
\caption{volumeCellGlobal: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1004,10 +1264,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( Time ) \\
+ Dimension: & Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% volumeEdgeGlobal \\
+ \hline
\caption{volumeEdgeGlobal: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1020,10 +1284,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( Time ) \\
+ Dimension: & Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% CFLNumberGlobal \\
+ \hline
\caption{CFLNumberGlobal: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1036,10 +1304,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( Time ) \\
+ Dimension: & Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% nAccumulate \\
+ \hline
\caption{nAccumulate: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1052,10 +1324,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells Time ) \\
+ Dimension: & nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% acc\_ssh \\
+ \hline
\caption{acc\_ssh: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1068,10 +1344,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells Time ) \\
+ Dimension: & nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% acc\_sshVar \\
+ \hline
\caption{acc\_sshVar: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1084,10 +1364,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% acc\_uReconstructZonal \\
+ \hline
\caption{acc\_uReconstructZonal: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1100,10 +1384,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% acc\_uReconstructMeridional \\
+ \hline
\caption{acc\_uReconstructMeridional: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1116,10 +1404,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% acc\_uReconstructZonalVar \\
+ \hline
\caption{acc\_uReconstructZonalVar: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1132,10 +1424,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% acc\_uReconstructMeridionalVar \\
+ \hline
\caption{acc\_uReconstructMeridionalVar: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1148,10 +1444,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% acc\_u \\
+ \hline
\caption{acc\_u: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1164,10 +1464,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% acc\_uVar \\
+ \hline
\caption{acc\_uVar: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1180,10 +1484,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevelsP1 nCells Time ) \\
+ Dimension: & nVertLevelsP1 nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% state \% time\_levs(:) \% state \% acc\_vertVelocityTop \\
+ \hline
\caption{acc\_vertVelocityTop: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1198,10 +1506,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells ) \\
+ Dimension: & nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% latCell \\
+ \hline
\caption{latCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1214,10 +1526,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells ) \\
+ Dimension: & nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% lonCell \\
+ \hline
\caption{lonCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1230,10 +1546,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells ) \\
+ Dimension: & nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% xCell \\
+ \hline
\caption{xCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1246,10 +1566,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells ) \\
+ Dimension: & nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% yCell \\
+ \hline
\caption{yCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1262,10 +1586,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells ) \\
+ Dimension: & nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% zCell \\
+ \hline
\caption{zCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1278,10 +1606,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells ) \\
+ Dimension: & nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% indexToCellID \\
+ \hline
\caption{indexToCellID: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1294,10 +1626,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% latEdge \\
+ \hline
\caption{latEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1310,10 +1646,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% lonEdge \\
+ \hline
\caption{lonEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1326,10 +1666,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% xEdge \\
+ \hline
\caption{xEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1342,10 +1686,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% yEdge \\
+ \hline
\caption{yEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1358,10 +1706,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% zEdge \\
+ \hline
\caption{zEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1374,10 +1726,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% indexToEdgeID \\
+ \hline
\caption{indexToEdgeID: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1390,10 +1746,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertices ) \\
+ Dimension: & nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% latVertex \\
+ \hline
\caption{latVertex: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1406,10 +1766,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertices ) \\
+ Dimension: & nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% lonVertex \\
+ \hline
\caption{lonVertex: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1422,10 +1786,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertices ) \\
+ Dimension: & nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% xVertex \\
+ \hline
\caption{xVertex: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1438,10 +1806,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertices ) \\
+ Dimension: & nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% yVertex \\
+ \hline
\caption{yVertex: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1454,10 +1826,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertices ) \\
+ Dimension: & nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% zVertex \\
+ \hline
\caption{zVertex: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1470,10 +1846,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertices ) \\
+ Dimension: & nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% indexToVertexID \\
+ \hline
\caption{indexToVertexID: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1486,10 +1866,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells ) \\
+ Dimension: & nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% meshDensity \\
+ \hline
\caption{meshDensity: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1502,10 +1886,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% meshScalingDel2 \\
+ \hline
\caption{meshScalingDel2: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1518,10 +1906,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% meshScalingDel4 \\
+ \hline
\caption{meshScalingDel4: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1534,10 +1926,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% meshScaling \\
+ \hline
\caption{meshScaling: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1550,10 +1946,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( TWO nEdges ) \\
+ Dimension: & TWO nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% cellsOnEdge \\
+ \hline
\caption{cellsOnEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1566,10 +1966,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells ) \\
+ Dimension: & nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% nEdgesOnCell \\
+ \hline
\caption{nEdgesOnCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1582,10 +1986,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% nEdgesOnEdge \\
+ \hline
\caption{nEdgesOnEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1598,10 +2006,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( maxEdges nCells ) \\
+ Dimension: & maxEdges nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% edgesOnCell \\
+ \hline
\caption{edgesOnCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1614,10 +2026,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( maxEdges2 nEdges ) \\
+ Dimension: & maxEdges2 nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% edgesOnEdge \\
+ \hline
\caption{edgesOnEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1630,10 +2046,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( maxEdges2 nEdges ) \\
+ Dimension: & maxEdges2 nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% weightsOnEdge \\
+ \hline
\caption{weightsOnEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1646,10 +2066,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% dvEdge \\
+ \hline
\caption{dvEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1662,10 +2086,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% dcEdge \\
+ \hline
\caption{dcEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1678,10 +2106,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% angleEdge \\
+ \hline
\caption{angleEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1694,10 +2126,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells ) \\
+ Dimension: & nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% areaCell \\
+ \hline
\caption{areaCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1710,10 +2146,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertices ) \\
+ Dimension: & nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% areaTriangle \\
+ \hline
\caption{areaTriangle: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1726,10 +2166,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( R3 nEdges ) \\
+ Dimension: & R3 nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% edgeNormalVectors \\
+ \hline
\caption{edgeNormalVectors: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1742,10 +2186,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( R3 nCells ) \\
+ Dimension: & R3 nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% localVerticalUnitVectors \\
+ \hline
\caption{localVerticalUnitVectors: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1758,10 +2206,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( R3 TWO nCells ) \\
+ Dimension: & R3 TWO nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% cellTangentPlane \\
+ \hline
\caption{cellTangentPlane: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1774,10 +2226,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( maxEdges nCells ) \\
+ Dimension: & maxEdges nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% cellsOnCell \\
+ \hline
\caption{cellsOnCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1790,10 +2246,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( maxEdges nCells ) \\
+ Dimension: & maxEdges nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% verticesOnCell \\
+ \hline
\caption{verticesOnCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1806,10 +2266,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( TWO nEdges ) \\
+ Dimension: & TWO nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% verticesOnEdge \\
+ \hline
\caption{verticesOnEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1822,10 +2286,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( vertexDegree nVertices ) \\
+ Dimension: & vertexDegree nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% edgesOnVertex \\
+ \hline
\caption{edgesOnVertex: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1838,10 +2306,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( vertexDegree nVertices ) \\
+ Dimension: & vertexDegree nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% cellsOnVertex \\
+ \hline
\caption{cellsOnVertex: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1854,10 +2326,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( vertexDegree nVertices ) \\
+ Dimension: & vertexDegree nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% kiteAreasOnVertex \\
+ \hline
\caption{kiteAreasOnVertex: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1870,10 +2346,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% fEdge \\
+ \hline
\caption{fEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1886,10 +2366,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertices ) \\
+ Dimension: & nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% fVertex \\
+ \hline
\caption{fVertex: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1902,10 +2386,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells ) \\
+ Dimension: & nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% bottomDepth \\
+ \hline
\caption{bottomDepth: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1918,10 +2406,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( maxEdges2 TWO nEdges ) \\
+ Dimension: & maxEdges2 TWO nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% deriv\_two \\
+ \hline
\caption{deriv\_two: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1934,10 +2426,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nAdvectionCells nEdges ) \\
+ Dimension: & nAdvectionCells nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% adv\_coefs \\
+ \hline
\caption{adv\_coefs: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1950,10 +2446,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nAdvectionCells nEdges ) \\
+ Dimension: & nAdvectionCells nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% adv\_coefs\_2nd \\
+ \hline
\caption{adv\_coefs\_2nd: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1966,10 +2466,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nAdvectionCells nEdges ) \\
+ Dimension: & nAdvectionCells nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% adv\_coefs\_3rd \\
+ \hline
\caption{adv\_coefs\_3rd: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1982,10 +2486,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nAdvectionCells nEdges ) \\
+ Dimension: & nAdvectionCells nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% advCellsForEdge \\
+ \hline
\caption{advCellsForEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -1998,10 +2506,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% nAdvCellsForEdge \\
+ \hline
\caption{nAdvCellsForEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2014,10 +2526,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges ) \\
+ Dimension: & nVertLevels nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% highOrderAdvectionMask \\
+ \hline
\caption{highOrderAdvectionMask: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2030,10 +2546,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges ) \\
+ Dimension: & nVertLevels nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% lowOrderAdvectionMask \\
+ \hline
\caption{lowOrderAdvectionMask: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2046,10 +2566,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( maxEdges nCells ) \\
+ Dimension: & maxEdges nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% defc\_a \\
+ \hline
\caption{defc\_a: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2062,10 +2586,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( maxEdges nCells ) \\
+ Dimension: & maxEdges nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% defc\_b \\
+ \hline
\caption{defc\_b: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2078,10 +2606,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% kdiff \\
+ \hline
\caption{kdiff: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2094,10 +2626,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( R3 maxEdges nCells ) \\
+ Dimension: & R3 maxEdges nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% coeffs\_reconstruct \\
+ \hline
\caption{coeffs\_reconstruct: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2110,10 +2646,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells ) \\
+ Dimension: & nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% maxLevelCell \\
+ \hline
\caption{maxLevelCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2126,10 +2666,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% maxLevelEdgeTop \\
+ \hline
\caption{maxLevelEdgeTop: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2142,10 +2686,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nEdges ) \\
+ Dimension: & nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% maxLevelEdgeBot \\
+ \hline
\caption{maxLevelEdgeBot: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2158,10 +2706,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertices ) \\
+ Dimension: & nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% maxLevelVertexTop \\
+ \hline
\caption{maxLevelVertexTop: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2174,10 +2726,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertices ) \\
+ Dimension: & nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% maxLevelVertexBot \\
+ \hline
\caption{maxLevelVertexBot: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2190,10 +2746,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels ) \\
+ Dimension: & nVertLevels \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% refBottomDepth \\
+ \hline
\caption{refBottomDepth: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2206,10 +2766,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevelsP1 ) \\
+ Dimension: & nVertLevelsP1 \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% refBottomDepthTopOfCell \\
+ \hline
\caption{refBottomDepthTopOfCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2222,10 +2786,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels ) \\
+ Dimension: & nVertLevels \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% hZLevel \\
+ \hline
\caption{hZLevel: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2238,10 +2806,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels ) \\
+ Dimension: & nVertLevels \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% vertCoordMovementWeights \\
+ \hline
\caption{vertCoordMovementWeights: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2254,10 +2826,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges ) \\
+ Dimension: & nVertLevels nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% boundaryEdge \\
+ \hline
\caption{boundaryEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2270,10 +2846,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nVertices ) \\
+ Dimension: & nVertLevels nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% boundaryVertex \\
+ \hline
\caption{boundaryVertex: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2286,10 +2866,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells ) \\
+ Dimension: & nVertLevels nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% boundaryCell \\
+ \hline
\caption{boundaryCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2302,10 +2886,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges ) \\
+ Dimension: & nVertLevels nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% edgeMask \\
+ \hline
\caption{edgeMask: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2318,10 +2906,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nVertices ) \\
+ Dimension: & nVertLevels nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% vertexMask \\
+ \hline
\caption{vertexMask: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2334,10 +2926,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells ) \\
+ Dimension: & nVertLevels nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Output \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% cellMask \\
+ \hline
\caption{cellMask: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2350,10 +2946,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges ) \\
+ Dimension: & nVertLevels nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% u\_src \\
+ \hline
\caption{u\_src: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2366,10 +2966,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells ) \\
+ Dimension: & nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% temperatureRestore \\
+ \hline
\caption{temperatureRestore: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2382,10 +2986,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells ) \\
+ Dimension: & nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% salinityRestore \\
+ \hline
\caption{salinityRestore: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2398,10 +3006,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nMonths nEdges ) \\
+ Dimension: & nMonths nEdges \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% windStressMonthly \\
+ \hline
\caption{windStressMonthly: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2414,10 +3026,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nMonths nCells ) \\
+ Dimension: & nMonths nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% temperatureRestoreMonthly \\
+ \hline
\caption{temperatureRestoreMonthly: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2430,10 +3046,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nMonths nCells ) \\
+ Dimension: & nMonths nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% salinityRestoreMonthly \\
+ \hline
\caption{salinityRestoreMonthly: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2446,10 +3066,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( maxEdges nCells ) \\
+ Dimension: & maxEdges nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% edgeSignOnCell \\
+ \hline
\caption{edgeSignOnCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2462,10 +3086,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( maxEdges nVertices ) \\
+ Dimension: & maxEdges nVertices \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% edgeSignOnVertex \\
+ \hline
\caption{edgeSignOnVertex: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2478,10 +3106,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( maxEdges nCells ) \\
+ Dimension: & maxEdges nCells \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% kiteIndexOnCell \\
+ \hline
\caption{kiteIndexOnCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2494,17 +3126,21 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells Time ) \\
+ Dimension: & nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & Input Restart \\
+ \hline
+ Location in code: & domain \% blocklist \% mesh \% seaSurfacePressure \\
+ \hline
\caption{seaSurfacePressure: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[tend]{\hyperref[sec:var_tab_tend]{tend}}
\label{sec:var_sec_tend}
-\subsection[tend\_u]{\hyperref[sec:var_tab_tend]{tend\_u}}
-\label{subsec:var_sec_tend_tend_u}
+\subsection[tend\_temperature]{\hyperref[sec:var_tab_tend]{tend\_temperature}}
+\label{subsec:var_sec_tend_tend_temperature}
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
@@ -2512,15 +3148,23 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nEdges Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
- \caption{tend\_u: {\bf \color{red} MISSING}}
+ Default Streams: & None \\
+ \hline
+ Index in tracers Array: & domain \% blocklist \% tend \% index\_tend\_temperature \\
+ \hline
+ Location in code: & domain \% blocklist \% tend \% tracers \\
+ \hline
+ Array Group: & dynamics \\
+ \hline
+ \caption{tend\_temperature: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
-\subsection[tend\_h]{\hyperref[sec:var_tab_tend]{tend\_h}}
-\label{subsec:var_sec_tend_tend_h}
+\subsection[tend\_salinity]{\hyperref[sec:var_tab_tend]{tend\_salinity}}
+\label{subsec:var_sec_tend_tend_salinity}
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
@@ -2528,15 +3172,23 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
- \caption{tend\_h: {\bf \color{red} MISSING}}
+ Default Streams: & None \\
+ \hline
+ Index in tracers Array: & domain \% blocklist \% tend \% index\_tend\_salinity \\
+ \hline
+ Location in code: & domain \% blocklist \% tend \% tracers \\
+ \hline
+ Array Group: & dynamics \\
+ \hline
+ \caption{tend\_salinity: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
-\subsection[tend\_ssh]{\hyperref[sec:var_tab_tend]{tend\_ssh}}
-\label{subsec:var_sec_tend_tend_ssh}
+\subsection[tend\_tracer1]{\hyperref[sec:var_tab_tend]{tend\_tracer1}}
+\label{subsec:var_sec_tend_tend_tracer1}
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
@@ -2544,15 +3196,23 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
- \caption{tend\_ssh: {\bf \color{red} MISSING}}
+ Default Streams: & None \\
+ \hline
+ Index in tracers Array: & domain \% blocklist \% tend \% index\_tend\_tracer1 \\
+ \hline
+ Location in code: & domain \% blocklist \% tend \% tracers \\
+ \hline
+ Array Group: & testing \\
+ \hline
+ \caption{tend\_tracer1: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
-\subsection[tend\_temperature]{\hyperref[sec:var_tab_tend]{tend\_temperature}}
-\label{subsec:var_sec_tend_tend_temperature}
+\subsection[tend\_u]{\hyperref[sec:var_tab_tend]{tend\_u}}
+\label{subsec:var_sec_tend_tend_u}
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
@@ -2560,15 +3220,19 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nEdges Time \\
\hline
Persistence: & persistent \\
\hline
- \caption{tend\_temperature: {\bf \color{red} MISSING}}
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% tend \% tend\_u \\
+ \hline
+ \caption{tend\_u: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
-\subsection[tend\_salinity]{\hyperref[sec:var_tab_tend]{tend\_salinity}}
-\label{subsec:var_sec_tend_tend_salinity}
+\subsection[tend\_h]{\hyperref[sec:var_tab_tend]{tend\_h}}
+\label{subsec:var_sec_tend_tend_h}
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
@@ -2576,15 +3240,19 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nVertLevels nCells Time \\
\hline
Persistence: & persistent \\
\hline
- \caption{tend\_salinity: {\bf \color{red} MISSING}}
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% tend \% tend\_h \\
+ \hline
+ \caption{tend\_h: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
-\subsection[tend\_tracer1]{\hyperref[sec:var_tab_tend]{tend\_tracer1}}
-\label{subsec:var_sec_tend_tend_tracer1}
+\subsection[tend\_ssh]{\hyperref[sec:var_tab_tend]{tend\_ssh}}
+\label{subsec:var_sec_tend_tend_ssh}
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
@@ -2592,11 +3260,15 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevels nCells Time ) \\
+ Dimension: & nCells Time \\
\hline
Persistence: & persistent \\
\hline
- \caption{tend\_tracer1: {\bf \color{red} MISSING}}
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% tend \% tend\_ssh \\
+ \hline
+ \caption{tend\_ssh: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
\section[diagnostics]{\hyperref[sec:var_tab_diagnostics]{diagnostics}}
@@ -2610,10 +3282,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevelsP1 nCells Time ) \\
+ Dimension: & nVertLevelsP1 nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% diagnostics \% RiTopOfCell \\
+ \hline
\caption{RiTopOfCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2626,10 +3302,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevelsP1 nEdges Time ) \\
+ Dimension: & nVertLevelsP1 nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% diagnostics \% RiTopOfEdge \\
+ \hline
\caption{RiTopOfEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2642,10 +3322,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevelsP1 nEdges Time ) \\
+ Dimension: & nVertLevelsP1 nEdges Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% diagnostics \% vertViscTopOfEdge \\
+ \hline
\caption{vertViscTopOfEdge: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
@@ -2658,10 +3342,14 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( nVertLevelsP1 nCells Time ) \\
+ Dimension: & nVertLevelsP1 nCells Time \\
\hline
Persistence: & persistent \\
\hline
+ Default Streams: & None \\
+ \hline
+ Location in code: & domain \% blocklist \% diagnostics \% vertDiffTopOfCell \\
+ \hline
\caption{vertDiffTopOfCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
Modified: trunk/documents/users_guide/ocean/variable_table_documentation.tex
===================================================================
--- trunk/documents/users_guide/ocean/variable_table_documentation.tex 2013-03-15 14:09:09 UTC (rev 2617)
+++ trunk/documents/users_guide/ocean/variable_table_documentation.tex 2013-03-15 15:30:08 UTC (rev 2618)
@@ -8,22 +8,28 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
- \hyperref[subsec:var_sec_state_xtime]{xtime} & {\bf \color{red} MISSING} \\
+ \hyperref[subsec:var_sec_state_temperature]{temperature} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:var_sec_state_u]{u} & {\bf \color{red} MISSING} \\
+ \hyperref[subsec:var_sec_state_salinity]{salinity} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:var_sec_state_h]{h} & {\bf \color{red} MISSING} \\
+ \hyperref[subsec:var_sec_state_tracer1]{tracer1} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:var_sec_state_rho]{rho} & {\bf \color{red} MISSING} \\
- \hline
\hyperref[subsec:var_sec_state_temperature]{temperature} & {\bf \color{red} MISSING} \\
\hline
\hyperref[subsec:var_sec_state_salinity]{salinity} & {\bf \color{red} MISSING} \\
\hline
\hyperref[subsec:var_sec_state_tracer1]{tracer1} & {\bf \color{red} MISSING} \\
\hline
+ \hyperref[subsec:var_sec_state_xtime]{xtime} & {\bf \color{red} MISSING} \\
+ \hline
+ \hyperref[subsec:var_sec_state_u]{u} & {\bf \color{red} MISSING} \\
+ \hline
+ \hyperref[subsec:var_sec_state_h]{h} & {\bf \color{red} MISSING} \\
+ \hline
+ \hyperref[subsec:var_sec_state_rho]{rho} & {\bf \color{red} MISSING} \\
+ \hline
\hyperref[subsec:var_sec_state_uBtr]{uBtr} & {\bf \color{red} MISSING} \\
\hline
\hyperref[subsec:var_sec_state_ssh]{ssh} & {\bf \color{red} MISSING} \\
@@ -168,7 +174,7 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
\hyperref[subsec:var_sec_mesh_latCell]{latCell} & {\bf \color{red} MISSING} \\
\hline
@@ -344,13 +350,13 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
- \hyperref[subsec:var_sec_tend_tend_u]{tend\_u} & {\bf \color{red} MISSING} \\
+ \hyperref[subsec:var_sec_tend_tend_temperature]{tend\_temperature} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:var_sec_tend_tend_h]{tend\_h} & {\bf \color{red} MISSING} \\
+ \hyperref[subsec:var_sec_tend_tend_salinity]{tend\_salinity} & {\bf \color{red} MISSING} \\
\hline
- \hyperref[subsec:var_sec_tend_tend_ssh]{tend\_ssh} & {\bf \color{red} MISSING} \\
+ \hyperref[subsec:var_sec_tend_tend_tracer1]{tend\_tracer1} & {\bf \color{red} MISSING} \\
\hline
\hyperref[subsec:var_sec_tend_tend_temperature]{tend\_temperature} & {\bf \color{red} MISSING} \\
\hline
@@ -358,6 +364,12 @@
\hline
\hyperref[subsec:var_sec_tend_tend_tracer1]{tend\_tracer1} & {\bf \color{red} MISSING} \\
\hline
+ \hyperref[subsec:var_sec_tend_tend_u]{tend\_u} & {\bf \color{red} MISSING} \\
+ \hline
+ \hyperref[subsec:var_sec_tend_tend_h]{tend\_h} & {\bf \color{red} MISSING} \\
+ \hline
+ \hyperref[subsec:var_sec_tend_tend_ssh]{tend\_ssh} & {\bf \color{red} MISSING} \\
+ \hline
\end{longtable}
\end{center}
}
@@ -368,7 +380,7 @@
\begin{center}
\begin{longtable}{| p{2.0in} | p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
\hyperref[subsec:var_sec_diagnostics_RiTopOfCell]{RiTopOfCell} & {\bf \color{red} MISSING} \\
\hline
</font>
</pre>