<p><b>ringler@lanl.gov</b> 2013-03-07 15:54:27 -0700 (Thu, 07 Mar 2013)</p><p><br>
add stubs for section descriptions<br>
add references to bib<br>
add input to include section descriptions<br>
</p><hr noshade><pre><font color="gray">Modified: trunk/documents/users_guide/ocn/mpas_ocean.bib
===================================================================
--- trunk/documents/users_guide/ocn/mpas_ocean.bib 2013-03-07 22:41:19 UTC (rev 2564)
+++ trunk/documents/users_guide/ocn/mpas_ocean.bib 2013-03-07 22:54:27 UTC (rev 2565)
@@ -13,7 +13,26 @@
month = "June"
}
+@article{Thuburn:2009tb,
+author = {Thuburn, J and Ringler, TD and Skamarock, WC and Klemp, JB},
+title = {{Numerical representation of geostrophic modes on arbitrarily structured C-grids}},
+journal = {Journal of Computational Physics},
+year = {2009},
+volume = {228},
+number = {22},
+pages = {8321--8335}
+}
+@article{Ringler:2010ta,
+author = {Ringler, TD and Thuburn, J and Klemp, JB and Skamarock, WC},
+title = {{A unified approach to energy conservation and potential vorticity dynamics for arbitrarily-structured C-grids}},
+journal = {Journal of Computational Physics},
+year = {2010},
+volume = {229},
+number = {9},
+pages = {3065--3090}
+}
+
%%%%%%%% test domains %%%%%%%%%
@ARTICLE{Ilicak_ea12om,
@@ -38,26 +57,8 @@
pages = {69-97}}
-%%%%%%%% horizonal turbulence closures %%%%%%%%%
+%%%%%%%% horizontal turbulence closures %%%%%%%%%
-@article{Gent_McWilliams90jpo,
-author="Peter R. Gent and James C. {McW}illiams",
-title="Isopycnal Mixing in Ocean Circulation Models",
-journal={\jpo},
-year=1990,
-volume=20,
-number=1,
-pages="150-155"}
-
-@article{Gent_ea95jpo,
-author="Peter R. Gent and Jurgen Willebrand and Trevor McDougall and James C. McWilliams",
-title="Parameterizing eddy-induced tracer transports in ocean general circulation models",
-journal={\jpo},
-year=1995,
-volume=25,
-number=25,
-pages="463-474"}
-
@article{Leith:1996wu,
author = {Leith, CE},
title = {{Stochastic models of chaotic systems}},
@@ -76,7 +77,32 @@
note="in press"
}
+@article{FoKeMe2008,
+author = {Fox-Kemper, B and Menemenlis, D.},
+title = {{Can Large Eddy Simulation Techniques Improve Mesoscale-Rich Ocean Models?}},
+journal = {Eddy resolving ocean models, Geophysical Monograph},
+year = {2008},
+volume = {177},
+pages = {319--338}
+}
+@article{Hecht:2008vz,
+author = {Hecht, M W and Hunke, E and Maltrud, M.~E. and Petersen, M R and Wingate, B.~A.},
+title = {{Lateral mixing in the eddying regime and a new broad-ranging formulation}},
+journal = {Eddy resolving ocean models, Geophysical Monograph},
+year = {2008},
+volume = {177},
+pages = {339--352}
+}
+
+@article{PietarilaGraham:kBOrkdmk,
+author = {Pietarila Graham, J. and Ringler, T},
+title = {{A framework for the evaluation of turbulence closures used in mesoscale ocean large-eddy simulations}},
+journal = {Ocean Modeling},
+year = {2012},
+number = {accepted}
+}
+
%%%%%%%% vertical mixing %%%%%%%%%
@article{Pacanowski_Philander81jpo,
@@ -231,6 +257,50 @@
adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}
+
+%%% advection %%%
+
+@article{Zalesak:1979wm,
+author = {Zalesak, ST},
+title = {{Fully multidimensional flux-corrected transport algorithms for fluids}},
+journal = {Journal of Computational Physics},
+year = {1979},
+volume = {31},
+number = {3},
+pages = {335--362}
+}
+
+%%% mesoscale eddy closure %%%
+
+@article{Ringler:2011hz,
+author = {Ringler, Todd and Gent, Peter},
+title = {{An eddy closure for potential vorticity}},
+journal = {Ocean Modelling},
+year = {2011},
+volume = {39},
+pages = {125--134}
+}
+
+@article{Gent_McWilliams90jpo,
+author="Peter R. Gent and James C. {McW}illiams",
+title="Isopycnal Mixing in Ocean Circulation Models",
+journal={\jpo},
+year=1990,
+volume=20,
+number=1,
+pages="150-155"}
+
+@article{Gent_ea95jpo,
+author="Peter R. Gent and Jurgen Willebrand and Trevor McDougall and James C. McWilliams",
+title="Parameterizing eddy-induced tracer transports in ocean general circulation models",
+journal={\jpo},
+year=1995,
+volume=25,
+number=25,
+pages="463-474"}
+
+
+
%%% reference textbooks %%%
@book{Iserles96bk,
@@ -247,3 +317,5 @@
edition="Fifth",
publisher="Academic Press"}
+
+
Modified: trunk/documents/users_guide/ocn/namelist_table_documentation.tex
===================================================================
--- trunk/documents/users_guide/ocn/namelist_table_documentation.tex 2013-03-07 22:41:19 UTC (rev 2564)
+++ trunk/documents/users_guide/ocn/namelist_table_documentation.tex 2013-03-07 22:54:27 UTC (rev 2565)
@@ -182,6 +182,7 @@
}
\section{hmix\_Leith}
\label{sec:nm_tab_hmix_Leith}
+\input{ocn/section_descriptions/hmix_Leith.tex}
{\small
\begin{center}
\begin{longtable}{| p{2.0in} || p{4.0in} |}
@@ -340,6 +341,7 @@
}
\section{advection}
\label{sec:nm_tab_advection}
+\input{ocn/section_descriptions/advection.tex}
{\small
\begin{center}
\begin{longtable}{| p{2.0in} || p{4.0in} |}
@@ -392,6 +394,7 @@
}
\section{eos}
\label{sec:nm_tab_eos}
+\input{ocn/section_descriptions/eos.tex}
{\small
\begin{center}
\begin{longtable}{| p{2.0in} || p{4.0in} |}
@@ -406,6 +409,7 @@
}
\section{eos\_linear}
\label{sec:nm_tab_eos_linear}
+\input{ocn/section_descriptions/eos_linear.tex}
{\small
\begin{center}
\begin{longtable}{| p{2.0in} || p{4.0in} |}
Added: trunk/documents/users_guide/ocn/section_descriptions/advection.tex
===================================================================
--- trunk/documents/users_guide/ocn/section_descriptions/advection.tex (rev 0)
+++ trunk/documents/users_guide/ocn/section_descriptions/advection.tex 2013-03-07 22:54:27 UTC (rev 2565)
@@ -0,0 +1,5 @@
+advection here
+
+\cite{Zalesak:1979wm}
+
+\cite{Skamarock:2011tc}
\ No newline at end of file
Added: trunk/documents/users_guide/ocn/section_descriptions/eos.tex
===================================================================
--- trunk/documents/users_guide/ocn/section_descriptions/eos.tex (rev 0)
+++ trunk/documents/users_guide/ocn/section_descriptions/eos.tex 2013-03-07 22:54:27 UTC (rev 2565)
@@ -0,0 +1,3 @@
+eos here
+
+\cite{Jackett_McDougall95jaot}
Added: trunk/documents/users_guide/ocn/section_descriptions/eos_linear.tex
===================================================================
--- trunk/documents/users_guide/ocn/section_descriptions/eos_linear.tex (rev 0)
+++ trunk/documents/users_guide/ocn/section_descriptions/eos_linear.tex 2013-03-07 22:54:27 UTC (rev 2565)
@@ -0,0 +1 @@
+linear EOS here
Added: trunk/documents/users_guide/ocn/section_descriptions/hmix_Leith.tex
===================================================================
--- trunk/documents/users_guide/ocn/section_descriptions/hmix_Leith.tex (rev 0)
+++ trunk/documents/users_guide/ocn/section_descriptions/hmix_Leith.tex 2013-03-07 22:54:27 UTC (rev 2565)
@@ -0,0 +1,3 @@
+Leith here
+
+\cite{Leith:1996wu}
</font>
</pre>