<p><b>dwj07@fsu.edu</b> 2013-03-05 19:11:24 -0700 (Tue, 05 Mar 2013)</p><p><br>
-- DOCUMENT COMMIT --<br>
<br>
Committing basic layout of users guide with stubs for the sections and chapters.<br>
</p><hr noshade><pre><font color="gray">Modified: trunk/documents/users_guide/mpas_ocean_users_guide.tex
===================================================================
--- trunk/documents/users_guide/mpas_ocean_users_guide.tex 2013-03-05 22:05:38 UTC (rev 2547)
+++ trunk/documents/users_guide/mpas_ocean_users_guide.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -7,6 +7,12 @@
\usepackage{color}
\usepackage{caption}
+\definecolor{black}{rgb}{0.0,0.0,0.0}
+\definecolor{darkblue}{rgb}{0.0,0.0,0.5}
+\hypersetup{colorlinks,breaklinks,
+ linkcolor=red,urlcolor=red,
+ anchorcolor=black,citecolor=black}
+
\setlength{\topmargin}{0in}
\setlength{\headheight}{0in}
\setlength{\headsep}{0in}
@@ -32,15 +38,26 @@
\maketitle
\tableofcontents
+%\part{Quick Start}
+\input{ocn/quick_start.tex}
+
\part{Introduction}
\input{shared/mpas_build_instructions.tex}
\input{shared/mpas_grid_information.tex}
\input{shared/mpas_visualization.tex}
\part{Ocean Model Specifics}
+\input{ocn/core_intro.tex}
\input{ocn/dimension_table_documentation.tex}
\input{ocn/namelist_table_documentation.tex}
\input{ocn/variable_table_documentation.tex}
+
+\input{ocn/test_case_descriptions.tex}
+\input{ocn/cesm_coupling.tex}
+\input{ocn/troubleshooting.tex}
+
+\part{Appendices}
+\appendix
\input{ocn/namelist_section_documentation.tex}
\input{ocn/variable_section_documentation.tex}
Added: trunk/documents/users_guide/ocn/cesm_coupling.tex
===================================================================
--- trunk/documents/users_guide/ocn/cesm_coupling.tex (rev 0)
+++ trunk/documents/users_guide/ocn/cesm_coupling.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -0,0 +1,5 @@
+\chapter{Running MPAS-Ocean within the CESM}
+\label{chap:cesm_coupling}
+
+Running MPAS-Ocean within the CESM is currently a work in progress, but this
+chapter will be filled in later.
Added: trunk/documents/users_guide/ocn/core_intro.tex
===================================================================
--- trunk/documents/users_guide/ocn/core_intro.tex (rev 0)
+++ trunk/documents/users_guide/ocn/core_intro.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -0,0 +1,4 @@
+\chapter{Ocean Introduction}
+\label{chap:ocean-intro}
+
+
Modified: trunk/documents/users_guide/ocn/namelist_section_documentation.tex
===================================================================
--- trunk/documents/users_guide/ocn/namelist_section_documentation.tex 2013-03-05 22:05:38 UTC (rev 2547)
+++ trunk/documents/users_guide/ocn/namelist_section_documentation.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -791,22 +791,6 @@
\end{center}
\section{vmix}
\label{sec:nm_sec_vmix}
-\subsection{config\_implicit\_vertical\_mix}
-\label{subsec:nm_sec_config_implicit_vertical_mix}
-\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
- \hline
- Type: & logical \\
- \hline
- Units: & None \\
- \hline
- Default Value: & .true. \\
- \hline
- Possible Values: & {\bf \color{red} MISSING} \\
- \hline
- \caption{config\_implicit\_vertical\_mix: {\bf \color{red} DEPRECATED}}
-\end{longtable}
-\end{center}
\subsection{config\_convective\_visc}
\label{subsec:nm_sec_config_convective_visc}
\begin{center}
@@ -1611,24 +1595,6 @@
\caption{config\_btr\_solve\_SSH2: {\bf \color{red} DEFINE}}
\end{longtable}
\end{center}
-\section{sw\_model}
-\label{sec:nm_sec_sw_model}
-\subsection{config\_test\_case}
-\label{subsec:nm_sec_config_test_case}
-\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
- \hline
- Type: & integer \\
- \hline
- Units: & {\bf \color{red} MISSING} \\
- \hline
- Default Value: & 0 \\
- \hline
- Possible Values: & {\bf \color{red} MISSING} \\
- \hline
- \caption{config\_test\_case: {\bf \color{red} MISSING}}
-\end{longtable}
-\end{center}
\section{debug}
\label{sec:nm_sec_debug}
\subsection{config\_check\_zlevel\_consistency}
Modified: trunk/documents/users_guide/ocn/namelist_table_documentation.tex
===================================================================
--- trunk/documents/users_guide/ocn/namelist_table_documentation.tex 2013-03-05 22:05:38 UTC (rev 2547)
+++ trunk/documents/users_guide/ocn/namelist_table_documentation.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -4,10 +4,11 @@
\input{ocn/section_descriptions/time_management.tex}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_do_restart]{config\_do\_restart} & Flag that controls starting simulation from a restart, or inital conditions that are built into the input file. \\
\hline
\hyperref[subsec:nm_sec_config_start_time]{config\_start\_time} & Time stamp that describes the initial time of the simulation. \\
@@ -25,10 +26,11 @@
\label{sec:nm_tab_io}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_input_name]{config\_input\_name} & String that defines the full or relative path to the input file. \\
\hline
\hyperref[subsec:nm_sec_config_output_name]{config\_output\_name} & String that defines the full or relative path to where the output file(s) will be written. \\
@@ -58,10 +60,11 @@
\label{sec:nm_tab_time_integration}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_dt]{config\_dt} & Length of a single time step. \\
\hline
\hyperref[subsec:nm_sec_config_time_integrator]{config\_time\_integrator} & Time integration scheme to be used for the simulation. \\
@@ -74,10 +77,11 @@
\input{ocn/section_descriptions/grid.tex}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_num_halos]{config\_num\_halos} & Defines the number of halos extending outward from owned cells. \\
\hline
\hyperref[subsec:nm_sec_config_vert_coord_movement]{config\_vert\_coord\_movement} & Defines the movement of the vertical coordinate. \\
@@ -96,10 +100,11 @@
\input{ocn/section_descriptions/decomposition.tex}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_block_decomp_file_prefix]{config\_block\_decomp\_file\_prefix} & String that defines the full or relative path and prefix for the block decomposition files. \\
\hline
\hyperref[subsec:nm_sec_config_number_of_blocks]{config\_number\_of\_blocks} & The number of computational blocks in the simulation. \\
@@ -116,10 +121,11 @@
\input{ocn/section_descriptions/hmix.tex}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_hmix_ScaleWithMesh]{config\_hmix\_ScaleWithMesh} & Flag that controls if horizontal mixing parameters scale with the mesh density. \\
\hline
\hyperref[subsec:nm_sec_config_visc_vorticity_term]{config\_visc\_vorticity\_term} & {\bf \color{red} DEFINE} \\
@@ -134,10 +140,11 @@
\input{ocn/section_descriptions/hmix_del2.tex}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_use_mom_del2]{config\_use\_mom\_del2} & Flag that controls if del2 will be used for horizontal mixing of momentum. \\
\hline
\hyperref[subsec:nm_sec_config_use_tracer_del2]{config\_use\_tracer\_del2} & Flag that controls if del2 will be used for horizontal mixing of tracers. \\
@@ -155,10 +162,11 @@
\label{sec:nm_tab_hmix_del4}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_use_mom_del4]{config\_use\_mom\_del4} & Flag that controls if del4 will be used for horizontal mixing of momentum. \\
\hline
\hyperref[subsec:nm_sec_config_use_tracer_del4]{config\_use\_tracer\_del4} & Flag that controls if del4 will be used for horizontal mixing of tracers. \\
@@ -176,10 +184,11 @@
\label{sec:nm_tab_hmix_Leith}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_use_Leith_del2]{config\_use\_Leith\_del2} & Flag that controls if the Leith closure will be used for horizontal mixing. \\
\hline
\hyperref[subsec:nm_sec_config_Leith_parameter]{config\_Leith\_parameter} & {\bf \color{red} DEFINE} \\
@@ -195,10 +204,11 @@
\label{sec:nm_tab_standard_GM}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_h_kappa]{config\_h\_kappa} & {\bf \color{red} DEFINE} \\
\hline
\hyperref[subsec:nm_sec_config_h_kappa_q]{config\_h\_kappa\_q} & {\bf \color{red} DEFINE} \\
@@ -210,10 +220,11 @@
\label{sec:nm_tab_Rayleigh_damping}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_Rayleigh_friction]{config\_Rayleigh\_friction} & Flag that controls if Rayleigh friction will be used in the simulation. \\
\hline
\hyperref[subsec:nm_sec_config_Rayleigh_damping_coeff]{config\_Rayleigh\_damping\_coeff} & Value of the Rayleigh friction coefficient. \\
@@ -225,11 +236,10 @@
\label{sec:nm_tab_vmix}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
- \hyperref[subsec:nm_sec_config_implicit_vertical_mix]{config\_implicit\_vertical\_mix} & {\bf \color{red} DEPRECATED} \\
\hline
\hyperref[subsec:nm_sec_config_convective_visc]{config\_convective\_visc} & Value of coefficient for convective vertical mixing of momentum. \\
\hline
@@ -242,10 +252,11 @@
\label{sec:nm_tab_vmix_const}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_use_const_visc]{config\_use\_const\_visc} & Flag that controls if constant vertical mixing of momentum is used. \\
\hline
\hyperref[subsec:nm_sec_config_use_const_diff]{config\_use\_const\_diff} & Flag that controls if constant vertical mixing of tracers is used. \\
@@ -261,10 +272,11 @@
\label{sec:nm_tab_vmix_rich}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_use_rich_visc]{config\_use\_rich\_visc} & Flag that controls if Richarson number vertical mixing of momentum is used. \\
\hline
\hyperref[subsec:nm_sec_config_use_rich_diff]{config\_use\_rich\_diff} & Flag that controls if Richarson number vertical mixing of tracers is used. \\
@@ -282,10 +294,11 @@
\label{sec:nm_tab_vmix_tanh}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_use_tanh_visc]{config\_use\_tanh\_visc} & Flag that controls if hyperbolic tangent vertical mixing of momentum is used. \\
\hline
\hyperref[subsec:nm_sec_config_use_tanh_diff]{config\_use\_tanh\_diff} & Flag that controls if hyperbolic tangent vertical mixing of tracers is used. \\
@@ -309,10 +322,11 @@
\label{sec:nm_tab_forcing}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_use_monthly_forcing]{config\_use\_monthly\_forcing} & Flag that controls if monthly forcing is used in the simulation. \\
\hline
\hyperref[subsec:nm_sec_config_restoreTS]{config\_restoreTS} & Flag that controls is temperature and salinity restoring is used in the simulation. \\
@@ -328,10 +342,11 @@
\label{sec:nm_tab_advection}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_vert_tracer_adv]{config\_vert\_tracer\_adv} & {\bf \color{red} DEPRECATED} \\
\hline
\hyperref[subsec:nm_sec_config_vert_tracer_adv_order]{config\_vert\_tracer\_adv\_order} & Order of vertical reconstruction of tracers used for vertical advection. \\
@@ -349,10 +364,11 @@
\label{sec:nm_tab_bottom_drag}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_bottom_drag_coeff]{config\_bottom\_drag\_coeff} & Value of the bottom drag coefficient. \\
\hline
\end{longtable}
@@ -362,10 +378,11 @@
\label{sec:nm_tab_pressure_gradient}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_pressure_gradient_type]{config\_pressure\_gradient\_type} & String that defines the type of pressure gradient used in the simulation. \\
\hline
\hyperref[subsec:nm_sec_config_rho0]{config\_rho0} & Value of the reference density for the Boussineq approximation. \\
@@ -377,10 +394,11 @@
\label{sec:nm_tab_eos}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_eos_type]{config\_eos\_type} & String that defines the equation of state used in the simulation. \\
\hline
\end{longtable}
@@ -390,10 +408,11 @@
\label{sec:nm_tab_eos_linear}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_eos_linear_alpha]{config\_eos\_linear\_alpha} & Value of temperature expansion coefficient used in the linear equation of state. \\
\hline
\hyperref[subsec:nm_sec_config_eos_linear_beta]{config\_eos\_linear\_beta} & Value of salinity expansion coefficient used in the linear equation of state. \\
@@ -411,10 +430,11 @@
\label{sec:nm_tab_split_explicit_ts}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_n_ts_iter]{config\_n\_ts\_iter} & {\bf \color{red} DEFINE} \\
\hline
\hyperref[subsec:nm_sec_config_n_bcl_iter_beg]{config\_n\_bcl\_iter\_beg} & {\bf \color{red} DEFINE} \\
@@ -442,28 +462,16 @@
\end{longtable}
\end{center}
}
-\section{sw\_model}
-\label{sec:nm_tab_sw_model}
-{\small
-\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
- \hline
- Name & Description \\
- \hline
- \hyperref[subsec:nm_sec_config_test_case]{config\_test\_case} & {\bf \color{red} MISSING} \\
- \hline
-\end{longtable}
-\end{center}
-}
\section{debug}
\label{sec:nm_tab_debug}
\input{ocn/section_descriptions/debug.tex}
{\small
\begin{center}
-\begin{longtable}{| p{2.0in} | p{4.0in} |}
+\begin{longtable}{| p{2.0in} || p{4.0in} |}
\hline
- Name & Description \\
+ {\bf Name} & {\bf Description} \\
\hline
+ \hline
\hyperref[subsec:nm_sec_config_check_zlevel_consistency]{config\_check\_zlevel\_consistency} & Flag that enables a zlevel consistency check on initialization. \\
\hline
\hyperref[subsec:nm_sec_config_filter_btr_mode]{config\_filter\_btr\_mode} & Flag that enables the filtering of the barotropic mode. \\
Added: trunk/documents/users_guide/ocn/quick_start.tex
===================================================================
--- trunk/documents/users_guide/ocn/quick_start.tex (rev 0)
+++ trunk/documents/users_guide/ocn/quick_start.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -0,0 +1,2 @@
+\chapter{MPAS-Ocean Quick Start Guide}
+\label{chap:quick_start}
Modified: trunk/documents/users_guide/ocn/section_descriptions/decomposition.tex
===================================================================
--- trunk/documents/users_guide/ocn/section_descriptions/decomposition.tex 2013-03-05 22:05:38 UTC (rev 2547)
+++ trunk/documents/users_guide/ocn/section_descriptions/decomposition.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -1,6 +1,6 @@
-MPAS handles decompositing all variables into computational blocks. The
+MPAS handles decomposing all variables into computational blocks. The
decomposition used needs to be specified at run time and is computed by an
-external tool (e.g. metis). Additionally MPAS supports multiple computational
+external tool (e.g. metis). Additionally, MPAS supports multiple computational
blocks per MPI process, and the user may specify an additional decomposition
file which can specify the assignment of blocks to MPI processes. Run-time
parameters that control the run-time decomposition used are specified within
Modified: trunk/documents/users_guide/ocn/section_descriptions/hmix_del2.tex
===================================================================
--- trunk/documents/users_guide/ocn/section_descriptions/hmix_del2.tex 2013-03-05 22:05:38 UTC (rev 2547)
+++ trunk/documents/users_guide/ocn/section_descriptions/hmix_del2.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -17,7 +17,7 @@
= [</font>
<font color="black">abla\cdot(\widehat{h}_{k,:} \kappa_h </font>
<font color="red">abla\varphi_{k,:} )]_{i}
\end{eqnarray}
in discrete form. The biharmonic operator smooths the momentum and
-tracer fields, and smooths more stongly at small scales than at large
+tracer fields, and smooths more strongly at small scales than at large
scales. This operator is the two dimensional form of the heat equation,
$u_t=</font>
<font color="gray">u u_{xx}$, described in introductory books on partial
differential equations. The strength of mixing is controlled by the
Modified: trunk/documents/users_guide/ocn/section_descriptions/mesh.tex
===================================================================
--- trunk/documents/users_guide/ocn/section_descriptions/mesh.tex 2013-03-05 22:05:38 UTC (rev 2547)
+++ trunk/documents/users_guide/ocn/section_descriptions/mesh.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -1,5 +1,5 @@
The mesh data type contains a single time level. The fields inside the mesh
structure are not assumed to be time dependent. This data structure contains
fields that describe the mesh, and the connectivity of the mesh. Several of the
-fields contained in this structure are shared throguhout all MPAS dynamical
+fields contained in this structure are shared throughout all MPAS dynamical
cores.
Modified: trunk/documents/users_guide/ocn/section_descriptions/state.tex
===================================================================
--- trunk/documents/users_guide/ocn/section_descriptions/state.tex 2013-03-05 22:05:38 UTC (rev 2547)
+++ trunk/documents/users_guide/ocn/section_descriptions/state.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -1,3 +1,3 @@
-The state data structure contains a set of pronositic and diagnositc fields
+The state data structure contains a set of prognostic and diagnostic fields
that are time dependent. The fields contained inside of state have two time
levels available in the default version of MPAS-Ocean.
Modified: trunk/documents/users_guide/ocn/section_descriptions/time_management.tex
===================================================================
--- trunk/documents/users_guide/ocn/section_descriptions/time_management.tex 2013-03-05 22:05:38 UTC (rev 2547)
+++ trunk/documents/users_guide/ocn/section_descriptions/time_management.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -1,4 +1,4 @@
-General time management is handlede by the time\_management namelist record.
+General time management is handled by the time\_management namelist record.
Included options handle time related parts of MPAS such as the calendar that is
used throughout a simulation, and if the simulation is a restart or not.
Added: trunk/documents/users_guide/ocn/test_case_descriptions.tex
===================================================================
--- trunk/documents/users_guide/ocn/test_case_descriptions.tex (rev 0)
+++ trunk/documents/users_guide/ocn/test_case_descriptions.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -0,0 +1,3 @@
+\chapter{MPAS-Ocean Test Cases}
+\label{chap:ocean_test_cases}
+
Added: trunk/documents/users_guide/ocn/troubleshooting.tex
===================================================================
--- trunk/documents/users_guide/ocn/troubleshooting.tex (rev 0)
+++ trunk/documents/users_guide/ocn/troubleshooting.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -0,0 +1,4 @@
+\chapter{Troubleshooting}
+\label{chap:troubleshooting}
+
+
Modified: trunk/documents/users_guide/ocn/variable_section_documentation.tex
===================================================================
--- trunk/documents/users_guide/ocn/variable_section_documentation.tex 2013-03-05 22:05:38 UTC (rev 2547)
+++ trunk/documents/users_guide/ocn/variable_section_documentation.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -1756,7 +1756,7 @@
\hline
Units: & {\bf \color{red} MISSING} \\
\hline
- Dimension: & ( R3 TWO nEdges ) \\
+ Dimension: & ( R3 TWO nCells ) \\
\hline
Persistence: & persistent \\
\hline
@@ -2483,6 +2483,22 @@
\caption{kiteIndexOnCell: {\bf \color{red} MISSING}}
\end{longtable}
\end{center}
+\subsection{seaSurfacePressure}
+\label{subsec:var_sec_mesh_seaSurfacePressure}
+\begin{center}
+\begin{longtable}{| p{2.0in} | p{4.0in} |}
+ \hline
+ Type: & real \\
+ \hline
+ Units: & {\bf \color{red} MISSING} \\
+ \hline
+ Dimension: & ( nCells Time ) \\
+ \hline
+ Persistence: & persistent \\
+ \hline
+ \caption{seaSurfacePressure: {\bf \color{red} MISSING}}
+\end{longtable}
+\end{center}
\section{tend}
\label{sec:var_sec_tend}
\subsection{tend\_u}
Modified: trunk/documents/users_guide/ocn/variable_table_documentation.tex
===================================================================
--- trunk/documents/users_guide/ocn/variable_table_documentation.tex 2013-03-05 22:05:38 UTC (rev 2547)
+++ trunk/documents/users_guide/ocn/variable_table_documentation.tex 2013-03-06 02:11:24 UTC (rev 2548)
@@ -330,6 +330,8 @@
\hline
\hyperref[subsec:var_sec_mesh_kiteIndexOnCell]{kiteIndexOnCell} & {\bf \color{red} MISSING} \\
\hline
+ \hyperref[subsec:var_sec_mesh_seaSurfacePressure]{seaSurfacePressure} & {\bf \color{red} MISSING} \\
+ \hline
\end{longtable}
\end{center}
}
</font>
</pre>