<p><b>dwj07@fsu.edu</b> 2013-02-13 11:29:41 -0700 (Wed, 13 Feb 2013)</p><p><br>
        -- BRANCH COMMIT --<br>
<br>
        Update baroclinic_channel makeMeshes.sh script to generate correct namelist.input files for the current trunk of the ocean core.<br>
</p><hr noshade><pre><font color="gray">Modified: branches/ocean_projects/ocean_test_cases_staging/ocean/baroclinic_channel/makeMeshes.sh
===================================================================
--- branches/ocean_projects/ocean_test_cases_staging/ocean/baroclinic_channel/makeMeshes.sh        2013-02-13 18:05:36 UTC (rev 2471)
+++ branches/ocean_projects/ocean_test_cases_staging/ocean/baroclinic_channel/makeMeshes.sh        2013-02-13 18:29:41 UTC (rev 2472)
@@ -34,7 +34,7 @@
 #######################################################
 ## Setup Variables for different run initializations ##
 #######################################################
-TIME_STEPPERS[&quot;config_time_integration&quot;]=&quot;rk4&quot;
+TIME_STEPPERS[&quot;config_time_integrator&quot;]=&quot;rk4&quot;
 TIME_STEPS[&quot;config_dt&quot;]=&quot;40&quot;
 
 DEFAULT_TIME_INTEGRATOR=&quot;'split_explicit'&quot;
@@ -51,7 +51,8 @@
 KEYS[$i]=&quot;config_restart_name&quot;;           VALUES[$i]=&quot;'restart.nc'&quot;; i=$i+1;
 KEYS[$i]=&quot;config_output_interval&quot;;        VALUES[$i]=&quot;'01_00:00:00'&quot;; i=$i+1;
 KEYS[$i]=&quot;config_do_restart&quot;;             VALUES[$i]=&quot;.false.&quot;; i=$i+1;
-KEYS[$i]=&quot;config_vert_grid_type&quot;;         VALUES[$i]=&quot;'zstar'&quot;; i=$i+1;
+KEYS[$i]=&quot;config_vert_coord_movement&quot;;    VALUES[$i]=&quot;'uniform_stretching'&quot;; i=$i+1;
+KEYS[$i]=&quot;config_alter_ICs_for_pbcs&quot;;     VALUES[$i]=&quot;'zlevel_pbcs_off'&quot;; i=$i+1;
 KEYS[$i]=&quot;config_rho0&quot;;                   VALUES[$i]=&quot;1000&quot;; i=$i+1;
 KEYS[$i]=&quot;config_bottom_drag_coeff&quot;;      VALUES[$i]=&quot;1.0e-2&quot;; i=$i+1;
 KEYS[$i]=&quot;config_vert_visc_type&quot;;         VALUES[$i]=&quot;'const'&quot;; i=$i+1;
@@ -60,7 +61,6 @@
 KEYS[$i]=&quot;config_monotonic&quot;;              VALUES[$i]=&quot;.true.&quot;; i=$i+1;
 KEYS[$i]=&quot;config_vert_tracer_adv_order&quot;;  VALUES[$i]=&quot;3&quot;; i=$i+1;
 KEYS[$i]=&quot;config_horiz_tracer_adv_order&quot;; VALUES[$i]=&quot;3&quot;; i=$i+1;
-KEYS[$i]=&quot;config_thickness_adv_order&quot;;    VALUES[$i]=&quot;3&quot;; i=$i+1;
 
 #################################################
 ## Build perfect hex meshes using periodic_hex ##
@@ -263,14 +263,17 @@
                                         ## Generate new namelist.input file for test case
                                         STATS=`echo &quot; $TOTAL_TIME / $TIME_STEP / 10 &quot; | bc`
                                         cat MPAS-namelist.input.template  \
-                                                | sed &quot;s/config_time_integration .*/config_time_integration = ${TIME_INTEGRATOR}/g&quot; \
+                                                | sed &quot;s/config_time_integrator .*/config_time_integrator = ${TIME_INTEGRATOR}/g&quot; \
                                                 | sed &quot;s/config_n_btr_subcycles .*/config_n_btr_subcycles = ${SUB_CYCLES}/g&quot; \
                                                 | sed &quot;s/config_dt .*/config_dt = ${TIME_STEP}/g&quot; \
-                                                | sed &quot;s/config_h_mom_eddy_visc2 .*/config_h_mom_eddy_visc2 = ${VISC_H}/g&quot; \
-                                                | sed &quot;s/config_h_tracer_eddy_diff2 .*/config_h_tracer_eddy_diff2 = 0.0/g&quot; \
+                                                | sed &quot;s/config_mom_del2 .*/config_mom_del2 = ${VISC_H}/g&quot; \
+                                                | sed &quot;s/config_tracer_del2 .*/config_tracer_del2 = 0.0/g&quot; \
                                                 | sed &quot;s/config_vert_visc .*/config_vert_visc = ${VISC_V}/g&quot; \
                                                 | sed &quot;s/config_vert_diff .*/config_vert_diff = 0.0/g&quot; \
-                                                | sed &quot;s/config_stats_interval .*/config_stats_interval = ${STATS}/g&quot; \
+                                                | sed &quot;s/config_use_mom_del4 .*/config_use_mom_del4 = .false./g&quot; \
+                                                | sed &quot;s/config_use_tracer_del4 .*/config_use_tracer_del4 = .false./g&quot; \
+                                                | sed &quot;s/config_use_mom_del2 .*/config_use_mom_del2 = .true./g&quot; \
+                                                | sed &quot;s/config_use_tracer_del2 .*/config_use_tracer_del2 = .false./g&quot; \
                                                 &gt; ${RUN_DIR}/namelist.input
                                 done
                         done
@@ -293,14 +296,19 @@
                 STATS=`echo &quot; $TOTAL_TIME / $SCALED_TIME_STEP / 10 &quot; | bc`
                 cat MPAS-namelist.input.template  \
                         | sed &quot;s/config_run_duration .*/config_run_duration = ${DEFAULT_RUN_DURATION}/g&quot; \
-                        | sed &quot;s/config_time_integration .*/config_time_integration = ${DEFAULT_TIME_INTEGRATOR}/g&quot; \
+                        | sed &quot;s/config_time_integrator .*/config_time_integrator = ${DEFAULT_TIME_INTEGRATOR}/g&quot; \
                         | sed &quot;s/config_n_btr_subcycles .*/config_n_btr_subcycles = ${DEFAULT_SUBCYCLES}/g&quot; \
                         | sed &quot;s/config_dt .*/config_dt = ${SCALED_TIME_STEP}/g&quot; \
-                        | sed &quot;s/config_h_mom_eddy_visc2 .*/config_h_mom_eddy_visc2 = ${VISC_H}/g&quot; \
-                        | sed &quot;s/config_h_tracer_eddy_diff2 .*/config_h_tracer_eddy_diff2 = ${VISC_H}/g&quot; \
+                        | sed &quot;s/config_mom_del2 .*/config_mom_del2 = ${VISC_H}/g&quot; \
+                        | sed &quot;s/config_tracer_del2 .*/config_tracer_del2 = ${VISC_H}/g&quot; \
                         | sed &quot;s/config_vert_visc .*/config_vert_visc = ${VISC_V}/g&quot; \
                         | sed &quot;s/config_vert_diff .*/config_vert_diff = ${VISC_V}/g&quot; \
-                        | sed &quot;s/config_stats_interval .*/config_stats_interval = ${STATS}/g&quot; \
+                        | sed &quot;s/config_use_mom_del4 .*/config_use_mom_del4 = .false./g&quot; \
+                        | sed &quot;s/config_use_tracer_del4 .*/config_use_tracer_del4 = .false./g&quot; \
+                        | sed &quot;s/config_use_mom_del2 .*/config_use_mom_del2 = .true./g&quot; \
+                        | sed &quot;s/config_use_tracer_del2 .*/config_use_tracer_del2 = .false./g&quot; \
+                        | sed &quot;s/config_use_const_visc .*/config_use_const_visc = .true./g&quot; \
+                        | sed &quot;s/config_use_const_diff .*/config_use_const_diff = .true./g&quot; \
                         &gt; ${BASE_DIR}/namelist.input
         done
 done

</font>
</pre>