<p><b>dwj07@fsu.edu</b> 2012-03-19 15:57:27 -0600 (Mon, 19 Mar 2012)</p><p><br>
-- BRANCH COMMIT --<br>
<br>
Adding a temporal convergence test case.<br>
</p><hr noshade><pre><font color="gray">Deleted: branches/ocean_projects/ocean_test_cases_staging/ocean/temporal_convergence/makeMeshes.sh
===================================================================
--- branches/ocean_projects/ocean_test_cases_staging/ocean/baroclinic_channel/makeMeshes.sh 2012-03-19 15:32:38 UTC (rev 1672)
+++ branches/ocean_projects/ocean_test_cases_staging/ocean/temporal_convergence/makeMeshes.sh 2012-03-19 21:57:27 UTC (rev 1676)
@@ -1,265 +0,0 @@
-#!/bin/bash
-
-########################################################################################
-## Change the horizontal spacings, vertical levels, and cells in the x direction here ##
-## To start, grids are periodic in the x direction. This may change later ##
-########################################################################################
-SPACINGS="1000 4000 10000"
-VERTLEVS="20"
-TCNAME="baroclinic_channel"
-
-###############################################################
-## Change reference spacing, time_step, and viscosities here ##
-###############################################################
-REF_TIME_STEP="60"
-REF_VISC_H="10.0"
-REF_VISC_V="0.0001"
-REF_SPACING="10000.0"
-TOTAL_TIME="17280000" # in seconds
-
-echo "Building ${TCNAME} meshes"
-
-CUR_DIR=`pwd`
-
-if [ -z "$3" ]; then
- PROCS="2 4 8 16 32"
-else
- PROCS="$3"
-fi
-
-X_EXTENT="160000"
-Y_EXTENT="500000"
-
-#######################################################
-## Setup Variables for different run initializations ##
-#######################################################
-TIME_STEPPERS["config_time_integration"]="rk4 se1 se20 use"
-TIME_STEPS["config_dt"]="1 5 10 20 40 80 160"
-
-############################################################
-## Setup Default namelist keys and values to update later ##
-############################################################
-i=0
-KEYS[$i]="config_run_duration"; VALUES[$i]="'0000_00:02:40'"; i=$i+1;
-KEYS[$i]="config_input_name"; VALUES[$i]="'grid.nc'"; i=$i+1;
-KEYS[$i]="config_output_name"; VALUES[$i]="'output.nc'"; i=$i+1;
-KEYS[$i]="config_restart_name"; VALUES[$i]="'restart.nc'"; i=$i+1;
-KEYS[$i]="config_output_interval"; VALUES[$i]="'00_00:02:40'"; i=$i+1;
-KEYS[$i]="config_do_restart"; VALUES[$i]=".false."; i=$i+1;
-KEYS[$i]="config_vert_grid_type"; VALUES[$i]="'zstar'"; i=$i+1;
-KEYS[$i]="config_rho0"; VALUES[$i]="1000"; i=$i+1;
-KEYS[$i]="config_bottom_drag_coeff"; VALUES[$i]="1.0e-2"; i=$i+1;
-KEYS[$i]="config_vert_visc_type"; VALUES[$i]="'const'"; i=$i+1;
-KEYS[$i]="config_vert_diff_type"; VALUES[$i]="'const'"; i=$i+1;
-KEYS[$i]="config_eos_type"; VALUES[$i]="'linear'"; i=$i+1;
-KEYS[$i]="config_monotonic"; VALUES[$i]=".true."; i=$i+1;
-KEYS[$i]="config_vert_tracer_adv_order"; VALUES[$i]="3"; i=$i+1;
-KEYS[$i]="config_horiz_tracer_adv_order"; VALUES[$i]="3"; i=$i+1;
-KEYS[$i]="config_thickness_adv_order"; VALUES[$i]="3"; i=$i+1;
-
-#################################################
-## Build perfect hex meshes using periodic_hex ##
-#################################################
-cd periodic_hex
-
-if [ -a Makefile.front ]; then
- cat Makefile.front > Makefile
- cat Makefile.end >> Makefile
-else
- cp Makefile.bak Makefile
-fi
-
-
-make clean > /dev/null
-make > /dev/null
-
-for SPACING in $SPACINGS
-do
- NAME=`echo "${SPACING}m"`
- NY=`echo "(${Y_EXTENT} / ${SPACING}) + 2" | bc`
- NX=`echo "(${X_EXTENT} / ${SPACING})" | bc`
- DC=`echo "${SPACING}.0"`
-
- echo " Creating ${NAME} base mesh"
-
- cat namelist.input.template | sed "s/*NX/${NX}/g" | sed "s/*NY/${NY}/g" | sed "s/*DC/${DC}/g" > namelist.input
- ./periodic_grid
-
- mv grid.nc ${TCNAME}_${NAME}.grid.nc
-done
-
-mv ${TCNAME}*.grid.nc $CUR_DIR/.
-make clean > /dev/null
-
-rm Makefile
-
-##############################################################################
-## Clear run_paths file, which will be used to submit all test cases later. ##
-##############################################################################
-
-cd $CUR_DIR
-
-if [ -a run_paths ]; then
- rm run_paths
-fi
-
-########################################
-## Setup Template Namelist input file ##
-########################################
-if [ -a MPAS-namelist.input.repo ]; then
- cp MPAS-namelist.input.repo MPAS-namelist.input.temporary
-else
- cp MPAS-namelist.input.default MPAS-namelist.input.temporary
-fi
-
-for ((i=0; i<${#KEYS[@]}; i++));
-do
- cat MPAS-namelist.input.temporary | sed "s/${KEYS[$i]} .*/${KEYS[$i]} = ${VALUES[$i]}/g" > Temp
- mv Temp MPAS-namelist.input.temporary
-done
-
-
-mv MPAS-namelist.input.temporary MPAS-namelist.input.template
-
-touch run_paths
-
-#################################################################
-## Generate full meshes, with initial conditions, using basin. ##
-#################################################################
-
-for VERTLEV in $VERTLEVS
-do
- if [ -a grid.nc ]; then
- unlink grid.nc
- fi
-
- if [ -a map ]; then
- rm map
- fi
-
- echo " Bulding basin for ${VERTLEV} levels"
-
- ## Build Basin
- cd basin_src
- cat basin-template.F | sed "s/*VERTLEVS/${VERTLEV}/g" > basin.F
-
- if [ -a Makefile.front ]; then
- cat Makefile.front > Makefile
- cat Makefile.end >> Makefile
- else
- cp Makefile.bak Makefile
- fi
-
- make clean > /dev/null
- make > /dev/null
- cd ../
- cp basin_src/map .
-
- ## Call basin, for each perfect hex mesh.
- for SPACING in $SPACINGS
- do
- NAME=`echo "${SPACING}m"`
- NY=`echo "(${Y_EXTENT} / ${SPACING}) + 2" | bc`
- NX=`echo "(${X_EXTENT} / ${SPACING})" | bc`
- DC=`echo "${SPACING}.0"`
-
- ## Compute scaled spacing, time_step, and viscosities
- D_SPACING=`echo "scale=4; ${SPACING}/${REF_SPACING}" | bc`
- TIME_STEP=`echo "scale=4; $D_SPACING * $REF_TIME_STEP" | bc`
- VISC_H=`echo "scale=4; ($D_SPACING^2)*${REF_VISC_H}" | bc`
- VISC_H=`echo ${REF_VISC_H}` # No Scaling in Horizontal
- VISC_V=`echo ${REF_VISC_V}` # No Scaling in Vertocal
- STATS=`echo " $TOTAL_TIME / $TIME_STEP / 10 " | bc`
-
- echo " Converting ${NAME} mesh to have ${VERTLEV} levels"
-
- ln -s ${TCNAME}_${NAME}.grid.nc grid.nc
-
- mkdir -p dx
- ./map > /dev/null
-
- unlink grid.nc
-
- mkdir -p ${NAME}_${VERTLEV}levs
-
- mv ocean.nc ${TCNAME}_${NAME}_${VERTLEV}levs.grid.nc
- mv graph.info ${TCNAME}_${NAME}_${VERTLEV}levs.graph.info
-
- for TIME_STEPPER in ${TIME_STEPPERS}
- do
- if [ ${TIME_STEPPER} == 'rk4' ]; then
- TIME_INTEGRATOR="'RK4'"
- elif [ ${TIME_STEPPER:0:2} == "se" ]; then
- TIME_INTEGRATOR="'split_explicit'"
- SUB_CYCLES=${TIME_STEPPER:2}
- elif [ ${TIME_STEPPER} == 'use' ]; then
- TIME_INTEGRATOR="'unsplit_explicit'"
- fi
-
- for TIME_STEP in ${TIME_STEPS}
- do
-
- for PROC in $PROCS
- do
-
- RUN_NAME=${NAME}_${VERTLEV}levs/${TIME_STEPPER}_${TIME_STEP}/${PROC}procs
-
- mkdir -p ${RUN_NAME}
-
- pmetis ${TCNAME}_${NAME}_${VERTLEV}levs.graph.info $PROC > /dev/null
-
- ln -f -s ${CUR_DIR}/${NAME}_${VERTLEV}levs/${TCNAME}_${NAME}_${VERTLEV}levs.graph.info ${RUN_NAME}/graph.info
- ln -f -s ${CUR_DIR}/${NAME}_${VERTLEV}levs/${TCNAME}_${NAME}_${VERTLEV}levs.graph.info.part.${PROC} ${RUN_NAME}/graph.info.part.${PROC}
- ln -f -s ${CUR_DIR}/${NAME}_${VERTLEV}levs/${TCNAME}_${NAME}_${VERTLEV}levs.grid.nc ${RUN_NAME}/grid.nc
- ln -f -s ${CUR_DIR}/${NAME}_${VERTLEV}levs/dx ${RUN_NAME}/dx
-# cp -R dx ${RUN_NAME}/dx
-
- ## Copy executable to run directory
- if [ $# -ge 1 ]; then
- if [ -e ${RUN_NAME}/ocean_model.exe ]; then
- unlink ${RUN_NAME}/ocean_model.exe
- fi
-
- ln -s $1 ${RUN_NAME}/ocean_model.exe
- fi
-
- ## Copy run information to run directory
- if [ $# -ge 2 ]; then
- cp $2 ${RUN_NAME}/.
- fi
-
- echo "${CUR_DIR}/${RUN_NAME}" >> run_paths
-
- ## Generate new namelist.input file for test case
- cat MPAS-namelist.input.template \
- | sed "s/config_time_integration .*/config_time_integration = ${TIME_INTEGRATOR}/g" \
- | sed "s/config_n_btr_subcycles .*/config_n_btr_subcycles = ${SUB_CYCLES}/g" \
- | sed "s/config_dt .*/config_dt = ${TIME_STEP}/g" \
- | sed "s/config_h_mom_eddy_visc2 .*/config_h_mom_eddy_visc2 = ${VISC_H}/g" \
- | sed "s/config_h_tracer_eddy_diff2 .*/config_h_tracer_eddy_diff2 = 0.0/g" \
- | sed "s/config_vert_visc .*/config_vert_visc = ${VISC_V}/g" \
- | sed "s/config_vert_diff .*/config_vert_diff = 0.0/g" \
- | sed "s/config_dt .*/config_dt = ${TIME_STEP}/g" \
- | sed "s/config_stats_interval .*/config_stats_interval = ${STATS}/g" \
- > ${RUN_NAME}/namelist.input
- done
- done
- done
-
- mv ${TCNAME}_${NAME}_${VERTLEV}levs* ${NAME}_${VERTLEV}levs/.
- mv dx ${NAME}_${VERTLEV}levs/.
- done
-
- rm map
-done
-
-rm -rf dx
-rm MPAS-namelist.input.template
-rm ${TCNAME}*
-rm fort.*
-
-cd basin_src
-make clean > /dev/null
-rm Makefile
-cd ${CUR_DIR}
-
Copied: branches/ocean_projects/ocean_test_cases_staging/ocean/temporal_convergence/makeMeshes.sh (from rev 1674, branches/ocean_projects/ocean_test_cases_staging/ocean/baroclinic_channel/makeMeshes.sh)
===================================================================
--- branches/ocean_projects/ocean_test_cases_staging/ocean/temporal_convergence/makeMeshes.sh (rev 0)
+++ branches/ocean_projects/ocean_test_cases_staging/ocean/temporal_convergence/makeMeshes.sh 2012-03-19 21:57:27 UTC (rev 1676)
@@ -0,0 +1,294 @@
+#!/bin/bash
+
+########################################################################################
+## Change the horizontal spacings, vertical levels, and cells in the x direction here ##
+## To start, grids are periodic in the x direction. This may change later ##
+########################################################################################
+SPACINGS="1000 4000 10000"
+VERTLEVS="20"
+TCNAME="temporal_convergence"
+
+###############################################################
+## Change reference spacing, time_step, and viscosities here ##
+###############################################################
+REF_TIME_STEP="300"
+REF_VISC_H="10.0"
+REF_VISC_V="0.0001"
+REF_SPACING="10000.0"
+TOTAL_TIME="17280000" # in seconds
+
+echo "Building ${TCNAME} meshes"
+
+CUR_DIR=`pwd`
+
+if [ -z "$3" ]; then
+ PROCS="2 4 8 16 32"
+else
+ PROCS="$3"
+fi
+
+X_EXTENT="160000"
+Y_EXTENT="500000"
+
+#######################################################
+## Setup Variables for different run initializations ##
+#######################################################
+TIME_STEPPERS["config_time_integration"]="rk4 se1 se20 use"
+TIME_STEPS["config_dt"]="1 5 10 20 40 80 160"
+
+DEFAULT_TIME_INTEGRATOR="'split_explicit'"
+DEFAULT_SUBCYCLES=20
+DEFAULT_RUN_DURATION="'0200_00:00:00'"
+
+############################################################
+## Setup Default namelist keys and values to update later ##
+############################################################
+i=0
+KEYS[$i]="config_run_duration"; VALUES[$i]="'0000_00:02:40'"; i=$i+1;
+KEYS[$i]="config_input_name"; VALUES[$i]="'grid.nc'"; i=$i+1;
+KEYS[$i]="config_output_name"; VALUES[$i]="'output.nc'"; i=$i+1;
+KEYS[$i]="config_restart_name"; VALUES[$i]="'restart.nc'"; i=$i+1;
+KEYS[$i]="config_output_interval"; VALUES[$i]="'00_00:02:40'"; i=$i+1;
+KEYS[$i]="config_do_restart"; VALUES[$i]=".false."; i=$i+1;
+KEYS[$i]="config_vert_grid_type"; VALUES[$i]="'zstar'"; i=$i+1;
+KEYS[$i]="config_rho0"; VALUES[$i]="1000"; i=$i+1;
+KEYS[$i]="config_bottom_drag_coeff"; VALUES[$i]="1.0e-2"; i=$i+1;
+KEYS[$i]="config_vert_visc_type"; VALUES[$i]="'const'"; i=$i+1;
+KEYS[$i]="config_vert_diff_type"; VALUES[$i]="'const'"; i=$i+1;
+KEYS[$i]="config_eos_type"; VALUES[$i]="'linear'"; i=$i+1;
+KEYS[$i]="config_monotonic"; VALUES[$i]=".true."; i=$i+1;
+KEYS[$i]="config_vert_tracer_adv_order"; VALUES[$i]="3"; i=$i+1;
+KEYS[$i]="config_horiz_tracer_adv_order"; VALUES[$i]="3"; i=$i+1;
+KEYS[$i]="config_thickness_adv_order"; VALUES[$i]="3"; i=$i+1;
+
+#################################################
+## Build perfect hex meshes using periodic_hex ##
+#################################################
+cd periodic_hex
+
+if [ -a Makefile.front ]; then
+ cat Makefile.front > Makefile
+ cat Makefile.end >> Makefile
+else
+ cp Makefile.bak Makefile
+fi
+
+
+make clean > /dev/null
+make > /dev/null
+
+for SPACING in $SPACINGS
+do
+ NAME=`echo "${SPACING}m"`
+ NY=`echo "(${Y_EXTENT} / ${SPACING}) + 2" | bc`
+ NX=`echo "(${X_EXTENT} / ${SPACING})" | bc`
+ DC=`echo "${SPACING}.0"`
+
+ echo " Creating ${NAME} base mesh"
+
+ cat namelist.input.template | sed "s/*NX/${NX}/g" | sed "s/*NY/${NY}/g" | sed "s/*DC/${DC}/g" > namelist.input
+ ./periodic_grid
+
+ mv grid.nc ${TCNAME}_${NAME}.grid.nc
+done
+
+mv ${TCNAME}*.grid.nc $CUR_DIR/.
+make clean > /dev/null
+
+rm Makefile
+
+##############################################################################
+## Clear run_paths file, which will be used to submit all test cases later. ##
+##############################################################################
+
+cd $CUR_DIR
+
+if [ -a run_paths ]; then
+ rm run_paths
+fi
+
+########################################
+## Setup Template Namelist input file ##
+########################################
+if [ -a MPAS-namelist.input.repo ]; then
+ cp MPAS-namelist.input.repo MPAS-namelist.input.temporary
+else
+ cp MPAS-namelist.input.default MPAS-namelist.input.temporary
+fi
+
+for ((i=0; i<${#KEYS[@]}; i++));
+do
+ cat MPAS-namelist.input.temporary | sed "s/${KEYS[$i]} .*/${KEYS[$i]} = ${VALUES[$i]}/g" > Temp
+ mv Temp MPAS-namelist.input.temporary
+done
+
+
+mv MPAS-namelist.input.temporary MPAS-namelist.input.template
+
+touch run_paths
+
+#################################################################
+## Generate full meshes, with initial conditions, using basin. ##
+#################################################################
+
+for VERTLEV in $VERTLEVS
+do
+ if [ -a grid.nc ]; then
+ unlink grid.nc
+ fi
+
+ if [ -a map ]; then
+ rm map
+ fi
+
+ echo " Bulding basin for ${VERTLEV} levels"
+
+ ## Build Basin
+ cd basin_src
+ cat basin-template.F | sed "s/*VERTLEVS/${VERTLEV}/g" > basin.F
+
+ if [ -a Makefile.front ]; then
+ cat Makefile.front > Makefile
+ cat Makefile.end >> Makefile
+ else
+ cp Makefile.bak Makefile
+ fi
+
+ make clean > /dev/null
+ make > /dev/null
+ cd ../
+ cp basin_src/map .
+
+ ## Call basin, for each perfect hex mesh.
+ for SPACING in $SPACINGS
+ do
+ NAME=`echo "${SPACING}m"`
+ NY=`echo "(${Y_EXTENT} / ${SPACING}) + 2" | bc`
+ NX=`echo "(${X_EXTENT} / ${SPACING})" | bc`
+ DC=`echo "${SPACING}.0"`
+
+ ## Compute scaled spacing, time_step, and viscosities
+ D_SPACING=`echo "scale=4; ${SPACING}/${REF_SPACING}" | bc`
+ SCALED_TIME_STEP=`echo "scale=4; $D_SPACING * $REF_TIME_STEP" | bc`
+ VISC_H=`echo "scale=4; ($D_SPACING^2)*${REF_VISC_H}" | bc`
+ VISC_H=`echo ${REF_VISC_H}` # No Scaling in Horizontal
+ VISC_V=`echo ${REF_VISC_V}` # No Scaling in Vertocal
+
+ echo " Converting ${NAME} mesh to have ${VERTLEV} levels"
+
+ ln -s ${TCNAME}_${NAME}.grid.nc grid.nc
+
+ mkdir -p dx
+ ./map > /dev/null
+
+ unlink grid.nc
+
+ mkdir -p ${NAME}_${VERTLEV}levs
+
+ for TIME_STEPPER in ${TIME_STEPPERS}
+ do
+ if [ ${TIME_STEPPER} == 'rk4' ]; then
+ TIME_INTEGRATOR="'RK4'"
+ SUB_CYCLES=0
+ elif [ ${TIME_STEPPER:0:2} == "se" ]; then
+ TIME_INTEGRATOR="'split_explicit'"
+ SUB_CYCLES=${TIME_STEPPER:2}
+ elif [ ${TIME_STEPPER} == 'use' ]; then
+ TIME_INTEGRATOR="'unsplit_explicit'"
+ SUB_CYCLES=0
+ fi
+
+ for TIME_STEP in ${TIME_STEPS}
+ do
+
+ for PROC in $PROCS
+ do
+
+ RUN_NAME=${NAME}_${VERTLEV}levs/.batch_runs/${TIME_STEPPER}_${TIME_STEP}/${PROC}procs
+
+ mkdir -p ${RUN_NAME}
+
+ ln -f -s ${CUR_DIR}/${NAME}_${VERTLEV}levs/graph.info ${RUN_NAME}/graph.info
+ ln -f -s ${CUR_DIR}/${NAME}_${VERTLEV}levs/graph.info.part.${PROC} ${RUN_NAME}/graph.info.part.${PROC}
+ ln -f -s ${CUR_DIR}/${NAME}_${VERTLEV}levs/grid.nc ${RUN_NAME}/grid.nc
+ ln -f -s ${CUR_DIR}/${NAME}_${VERTLEV}levs/dx ${RUN_NAME}/dx
+
+ ## Copy executable to run directory
+ if [ $# -ge 1 ]; then
+ if [ -e ${RUN_NAME}/ocean_model.exe ]; then
+ unlink ${RUN_NAME}/ocean_model.exe
+ fi
+
+ ln -s $1 ${RUN_NAME}/ocean_model.exe
+ fi
+
+ ## Copy run information to run directory
+ if [ $# -ge 2 ]; then
+ cp $2 ${RUN_NAME}/.
+ fi
+
+ echo "${CUR_DIR}/${RUN_NAME}" >> run_paths
+
+ ## Generate new namelist.input file for test case
+ STATS=`echo " $TOTAL_TIME / $TIME_STEP / 10 " | bc`
+ cat MPAS-namelist.input.template \
+ | sed "s/config_time_integration .*/config_time_integration = ${TIME_INTEGRATOR}/g" \
+ | sed "s/config_n_btr_subcycles .*/config_n_btr_subcycles = ${SUB_CYCLES}/g" \
+ | sed "s/config_dt .*/config_dt = ${TIME_STEP}/g" \
+ | sed "s/config_h_mom_eddy_visc2 .*/config_h_mom_eddy_visc2 = ${VISC_H}/g" \
+ | sed "s/config_h_tracer_eddy_diff2 .*/config_h_tracer_eddy_diff2 = 0.0/g" \
+ | sed "s/config_vert_visc .*/config_vert_visc = ${VISC_V}/g" \
+ | sed "s/config_vert_diff .*/config_vert_diff = 0.0/g" \
+ | sed "s/config_stats_interval .*/config_stats_interval = ${STATS}/g" \
+ > ${RUN_NAME}/namelist.input
+ done
+ done
+ done
+
+ mv ocean.nc ${NAME}_${VERTLEV}levs/grid.nc
+ mv graph.info ${NAME}_${VERTLEV}levs/graph.info
+ mv dx ${NAME}_${VERTLEV}levs/.
+
+ cd ${NAME}_${VERTLEV}levs
+ for PROC in $PROCS
+ do
+ pmetis graph.info $PROC > /dev/null
+ done
+ cd ${CUR_DIR}
+
+ ## Generate new namelist.input file for typical test case
+ STATS=`echo " $TOTAL_TIME / $SCALED_TIME_STEP / 10 " | bc`
+ cat MPAS-namelist.input.template \
+ | sed "s/config_run_duration .*/config_run_duration = ${DEFAULT_RUN_DURATION}/g" \
+ | sed "s/config_time_integration .*/config_time_integration = ${DEFAULT_TIME_INTEGRATOR}/g" \
+ | sed "s/config_n_btr_subcycles .*/config_n_btr_subcycles = ${DEFAULT_SUBCYCLES}/g" \
+ | sed "s/config_dt .*/config_dt = ${SCALED_TIME_STEP}/g" \
+ | sed "s/config_h_mom_eddy_visc2 .*/config_h_mom_eddy_visc2 = ${VISC_H}/g" \
+ | sed "s/config_h_tracer_eddy_diff2 .*/config_h_tracer_eddy_diff2 = ${VISC_H}/g" \
+ | sed "s/config_vert_visc .*/config_vert_visc = ${VISC_V}/g" \
+ | sed "s/config_vert_diff .*/config_vert_diff = ${VISC_V}/g" \
+ | sed "s/config_stats_interval .*/config_stats_interval = ${STATS}/g" \
+ > ${NAME}_${VERTLEV}levs/namelist.input
+ ## Copy executable to run directory
+ if [ $# -ge 1 ]; then
+ if [ -e ${NAME}_${VERTLEV}levs/ocean_model.exe ]; then
+ unlink ${NAME}_${VERTLEV}levs/ocean_model.exe
+ fi
+
+ ln -s $1 ${NAME}_${VERTLEV}levs/ocean_model.exe
+ fi
+ done
+
+ rm map
+done
+
+rm -rf dx
+rm MPAS-namelist.input.template
+rm ${TCNAME}*
+rm fort.*
+
+cd basin_src
+make clean > /dev/null
+rm Makefile
+cd ${CUR_DIR}
+
</font>
</pre>