<p><b>mpetersen@lanl.gov</b> 2012-01-26 17:25:04 -0700 (Thu, 26 Jan 2012)</p><p>Merging ale_vertical_coord_new to trunk.  This is a working version of zstar and weighted zstar for RK4 only.  Isopycnal in RK4 is operational and tested.  zstar is not done in split explicit yet.  Reviewed by Todd.<br>
</p><hr noshade><pre><font color="gray">
Property changes on: trunk/mpas
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp:754-986
/branches/ocean_projects/split_explicit_mrp:1134-1138
/branches/ocean_projects/split_explicit_timestepping:1044-1097
/branches/ocean_projects/vert_adv_mrp:704-745
/branches/source_renaming:1082-1113
/branches/time_manager:924-962
   + /branches/cam_mpas_nh:1260-1270
/branches/ocean_projects/ale_vert_coord:1225-1383
/branches/ocean_projects/ale_vert_coord_new:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp:754-986
/branches/ocean_projects/split_explicit_mrp:1134-1138
/branches/ocean_projects/split_explicit_timestepping:1044-1097
/branches/ocean_projects/vert_adv_mrp:704-745
/branches/source_renaming:1082-1113
/branches/time_manager:924-962


Property changes on: trunk/mpas/src
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/ocean_projects/rayleigh/src:1298-1311
   + /branches/ocean_projects/ale_vert_coord/src:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src:1387-1428
/branches/ocean_projects/rayleigh/src:1298-1311


Property changes on: trunk/mpas/src/core_ocean
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean:754-986
/branches/ocean_projects/rayleigh/src/core_ocean:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean:704-745
/branches/source_renaming/src/core_ocean:1082-1113
/branches/time_manager/src/core_ocean:924-962
   + /branches/cam_mpas_nh/src/core_ocean:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean:754-986
/branches/ocean_projects/rayleigh/src/core_ocean:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean:704-745
/branches/source_renaming/src/core_ocean:1082-1113
/branches/time_manager/src/core_ocean:924-962

Modified: trunk/mpas/src/core_ocean/Registry
===================================================================
--- trunk/mpas/src/core_ocean/Registry        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/Registry        2012-01-27 00:25:04 UTC (rev 1429)
@@ -172,9 +172,6 @@
 var persistent real hZLevel ( nVertLevels ) 0 iro hZLevel mesh - -
 var persistent real zMidZLevel ( nVertLevels ) 0 - zMidZLevel mesh - -
 var persistent real zTopZLevel ( nVertLevelsP1 ) 0 - zTopZLevel mesh - -
-var persistent real hMeanTopZLevel ( nVertLevels ) 0 - hMeanTopZLevel mesh - -
-var persistent real hRatioZLevelK ( nVertLevels ) 0 - hRatioZLevelK mesh - -
-var persistent real hRatioZLevelKm1 ( nVertLevels ) 0 - hRatioZLevelKm1 mesh - -
 
 % Boundary conditions: read from input, saved in restart and written to output
 var persistent integer boundaryEdge ( nVertLevels nEdges ) 0 iro boundaryEdge mesh - -
@@ -189,7 +186,7 @@
 
 % Prognostic variables: read from input, saved in restart, and written to output
 var persistent real    u ( nVertLevels nEdges Time ) 2 ir u state - -
-var persistent real    h ( nVertLevels nCells Time ) 2 ir h state - -
+var persistent real    h ( nVertLevels nCells Time ) 2 iro h state - -
 var persistent real    rho ( nVertLevels nCells Time ) 2 iro rho state - -
 var persistent real    temperature ( nVertLevels nCells Time ) 2 iro temperature state tracers dynamics
 var persistent real    salinity ( nVertLevels nCells Time ) 2 iro salinity state tracers dynamics
@@ -217,6 +214,7 @@
 var persistent real   u_diffusionBtr ( nEdges Time ) 2 - u_diffusionBtr state - -
 
 % Diagnostic fields: only written to output
+var persistent real    zMid ( nVertLevels nCells Time ) 2 io zMid state - -
 var persistent real    v ( nVertLevels nEdges Time ) 2 - v state - -
 var persistent real    divergence ( nVertLevels nCells Time ) 2 o divergence state - -
 var persistent real    vorticity ( nVertLevels nVertices Time ) 2 o vorticity state - -


Property changes on: trunk/mpas/src/core_ocean/Registry
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/Registry:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/Registry:754-986
/branches/ocean_projects/performance/src/core_ocean/Registry:1120-1372
/branches/ocean_projects/rayleigh/src/core_ocean/Registry:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/Registry:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/Registry:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/Registry:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/Registry:704-745
/branches/source_renaming/src/core_ocean/Registry:1082-1113
/branches/time_manager/src/core_ocean/Registry:924-962
   + /branches/cam_mpas_nh/src/core_ocean/Registry:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/Registry:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/Registry:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/Registry:754-986
/branches/ocean_projects/performance/src/core_ocean/Registry:1120-1372
/branches/ocean_projects/rayleigh/src/core_ocean/Registry:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/Registry:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/Registry:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/Registry:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/Registry:704-745
/branches/source_renaming/src/core_ocean/Registry:1082-1113
/branches/time_manager/src/core_ocean/Registry:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_advection.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_advection.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_advection.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_advection.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_advection.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_advection.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_advection.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_advection.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_advection.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_advection.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_advection.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_advection.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_advection.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_advection.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_advection.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_advection.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_advection.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_advection.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_advection.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_advection.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_advection.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_advection.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_advection.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_equation_of_state.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_equation_of_state.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_equation_of_state.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -154,7 +154,7 @@
       linearEos = .false.
       jmEos = .false.
 
-      if(config_vert_grid_type.eq.'zlevel') then
+      if(config_vert_grid_type.ne.'isopycnal') then
           eosON = .true.
 
           if (config_eos_type.eq.'linear') then


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_equation_of_state.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_equation_of_state.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_equation_of_state.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_equation_of_state.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_equation_of_state.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_equation_of_state.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_equation_of_state.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_equation_of_state.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_equation_of_state.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_equation_of_state.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_equation_of_state.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_equation_of_state.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_equation_of_state.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_equation_of_state.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_equation_of_state.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_equation_of_state.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_equation_of_state.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_equation_of_state.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_equation_of_state.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_equation_of_state.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_equation_of_state.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_equation_of_state.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_equation_of_state.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_equation_of_state_jm.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_equation_of_state_jm.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_equation_of_state_jm.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_equation_of_state_jm.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_equation_of_state_jm.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_equation_of_state_jm.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_equation_of_state_jm.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_equation_of_state_jm.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_equation_of_state_linear.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_equation_of_state_linear.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_equation_of_state_linear.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_equation_of_state_linear.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_equation_of_state_linear.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_equation_of_state_linear.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_equation_of_state_linear.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_equation_of_state_linear.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_global_diagnostics.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_global_diagnostics.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_global_diagnostics.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -430,7 +430,7 @@
             write (fileID,'(100es24.14)') averages(1:nVariables)
          close (fileID)
          open(fileID,file='stats_time.txt',ACCESS='append')
-            write (fileID,'(i5,10x,a,100es24.14)') timeIndex, &amp;
+            write (fileID,'(i10,10x,a,100es24.14)') timeIndex, &amp;
                state % xtime % scalar, dt, &amp;
                CFLNumberGlobal
          close (fileID)


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_global_diagnostics.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_global_diagnostics.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_global_diagnostics.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_global_diagnostics.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_global_diagnostics.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_global_diagnostics.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_global_diagnostics.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_global_diagnostics.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_global_diagnostics.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_global_diagnostics.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_global_diagnostics.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_global_diagnostics.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_global_diagnostics.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_global_diagnostics.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_global_diagnostics.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_global_diagnostics.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_global_diagnostics.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_global_diagnostics.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_global_diagnostics.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_global_diagnostics.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_global_diagnostics.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_global_diagnostics.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_global_diagnostics.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_mpas_core.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_mpas_core.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_mpas_core.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -98,17 +98,21 @@
 
       call ocn_compute_max_level(domain)
 
-      if (config_vert_grid_type.eq.'isopycnal') then
-         print *, ' Using isopycnal coordinates'
-      elseif (config_vert_grid_type.eq.'zlevel') then
-         print *, ' Using z-level coordinates'
-         call ocn_init_z_level(domain)
-      else 
-         print *, ' Incorrect choice of config_vert_grid_type:',&amp;
-           config_vert_grid_type
+      print *, ' Vertical grid type is: ',config_vert_grid_type
+
+      if (config_vert_grid_type.ne.'isopycnal'.and. &amp;
+          config_vert_grid_type.ne.'zlevel'.and. &amp;
+          config_vert_grid_type.ne.'zstar1'.and. &amp;
+          config_vert_grid_type.ne.'zstar'.and. &amp;
+          config_vert_grid_type.ne.'zstarWeights') then
+         print *, ' Incorrect choice of config_vert_grid_type.'
          call mpas_dmpar_abort(dminfo)
       endif
 
+      if (config_vert_grid_type.ne.'isopycnal') then
+         call ocn_init_z_level(domain)
+      endif
+
       if (trim(config_new_btr_variables_from) == 'btr_avg' &amp;
            .and.trim(config_time_integration) == 'unsplit_explicit') then
          print *, ' unsplit_explicit option must use',&amp;
@@ -261,7 +265,7 @@
 !              :block % mesh % nVertLevels,iCell) =  -1e34
 
 ! mrp 110516, added just to test for conservation of tracers
-!         block % state % time_levs(1) % state % tracers % array(block % state % time_levs(1) % state % index_tracer1,:,iCell) = 1.0
+         block % state % time_levs(1) % state % tracers % array(block % state % time_levs(1) % state % index_tracer1,:,iCell) = 1.0
 
       end do
 
@@ -494,10 +498,9 @@
    type (block_type), pointer :: block
 
    integer :: iTracer, cell, cell1, cell2
-   real (kind=RKIND) :: uhSum, hSum, sshEdge
+   real (kind=RKIND) :: uhSum, hSum, hEdge1
    real (kind=RKIND), dimension(:), pointer :: &amp;
-      hZLevel, zMidZLevel, zTopZLevel, &amp;
-      hMeanTopZLevel, hRatioZLevelK, hRatioZLevelKm1
+      hZLevel, zTopZLevel, zMidZLevel
    real (kind=RKIND), dimension(:,:), pointer :: h
    integer :: nVertLevels
 
@@ -507,41 +510,25 @@
 
       h          =&gt; block % state % time_levs(1) % state % h % array
       hZLevel    =&gt; block % mesh % hZLevel % array
-      zMidZLevel =&gt; block % mesh % zMidZLevel % array
       zTopZLevel =&gt; block % mesh % zTopZLevel % array
+      zMidZLevel =&gt; block % mesh % zMidZLevel % array
       nVertLevels = block % mesh % nVertLevels
-      hMeanTopZLevel    =&gt; block % mesh % hMeanTopZLevel % array
-      hRatioZLevelK    =&gt; block % mesh % hRatioZLevelK % array
-      hRatioZLevelKm1    =&gt; block % mesh % hRatioZLevelKm1 % array
 
-      ! These should eventually be in an input file.  For now
-      ! I just read them in from h(:,1).
-      ! Upon restart, the correct hZLevel should be in restart.nc
-      if (.not. config_do_restart) hZLevel = h(:,1)
+      ! hZLevel should be in the grid.nc or restart.nc file.
 
-      ! hZLevel should be in the grid.nc and restart.nc file, 
-      ! and h for k=1 must be specified there as well.

+      ! zTopZLevel is used for the z-coordinate of the bottom of
+      ! the water column.  This is used to compute zMid from bottom
+      ! up at each timestep.
+
+      ! zMidZLevel is used in the EOS computation to compute pressure.
       zTopZLevel(1) = 0.0
       do k = 1,nVertLevels
          zMidZLevel(k) = zTopZLevel(k)-0.5*hZLevel(k)
          zTopZLevel(k+1) = zTopZLevel(k)-  hZLevel(k)
       end do
 
-      hMeanTopZLevel(1) = 0.0
-      hRatioZLevelK(1) = 0.0
-      hRatioZLevelKm1(1) = 0.0
-      do k = 2,nVertLevels
-         hMeanTopZLevel(k) = 0.5*(hZLevel(k-1) + hZLevel(k))
-         hRatioZLevelK(k) = 0.5*hZLevel(k)/hMeanTopZLevel(k)
-         hRatioZLevelKm1(k) = 0.5*hZLevel(k-1)/hMeanTopZLevel(k)
-      end do
-
-      ! mrp 110601 For now, h is the variable saved in the restart file
-      ! I am computing SSH here.  In the future, could make smaller 
-      ! restart files for z-Level runs by saving SSH only.
+      ! Compute ssh from h at level 1.
       do iCell=1,block % mesh % nCells
-
           block % state % time_levs(1) % state % ssh % array(iCell) &amp; 
         = block % state % time_levs(1) % state % h % array(1,iCell) &amp; 
         - block % mesh % hZLevel % array(1)
@@ -570,21 +557,20 @@
                cell1 = block % mesh % cellsOnEdge % array(1,iEdge)
                cell2 = block % mesh % cellsOnEdge % array(2,iEdge)
 
-               sshEdge = 0.5*( &amp;
-                   block % state % time_levs(1) % state % ssh % array(cell1) &amp; 
-                 + block % state % time_levs(1) % state % ssh % array(cell2) ) 
-
                ! uBtr = sum(u)/sum(h) on each column
-               uhSum = (sshEdge + block % mesh % hZLevel % array(1)) &amp;
-                  * block % state % time_levs(1) % state % u % array(1,iEdge)
-               hSum = sshEdge + block % mesh % hZLevel % array(1)
+               uhSum = 0.0
+               hSum  = 0.0
 
-               do k=2,block % mesh % maxLevelEdgeTop % array(iEdge)
+               do k=1,block % mesh % maxLevelEdgeTop % array(iEdge)
+                  ! ocn_diagnostic_solve has not yet been called, so compute hEdge 
+                  ! just for this edge.
+                  hEdge1 = 0.5*( &amp;
+                      block % state % time_levs(1) % state % h % array(k,cell1) &amp; 
+                    + block % state % time_levs(1) % state % h % array(k,cell2) ) 
+
                   uhSum = uhSum &amp;
-                     + block % mesh % hZLevel % array(k) &amp;
-                      *block % state % time_levs(1) % state % u % array(k,iEdge)
-                  hSum = hSum &amp;
-                     + block % mesh % hZLevel % array(k)
+                     + hEdge1*block % state % time_levs(1) % state % u % array(k,iEdge)
+                  hSum = hSum + hEdge1
                enddo
                block % state % time_levs(1) % state % uBtr % array(iEdge) = uhSum/hsum
 
@@ -612,32 +598,6 @@
 
          endif
 
-!print *, '11 u ',minval(domain % blocklist % state % time_levs(1) % state % u % array(:,1:domain % blocklist % mesh % nEdgesSolve)), &amp;
-!                maxval(domain % blocklist % state % time_levs(1) % state % u % array(:,1:domain % blocklist % mesh % nEdgesSolve))
-!print *, '11 uBtr ',minval(domain % blocklist % state % time_levs(1) % state % uBtr % array(1:domain % blocklist % mesh % nEdgesSolve)), &amp;
-!                    maxval(domain % blocklist % state % time_levs(1) % state % uBtr % array(1:domain % blocklist % mesh % nEdgesSolve))
-!print *, '11 uBcl ',minval(domain % blocklist % state % time_levs(1) % state % uBcl % array(:,1:domain % blocklist % mesh % nEdgesSolve)), &amp;
-!                    maxval(domain % blocklist % state % time_levs(1) % state % uBcl % array(:,1:domain % blocklist % mesh % nEdgesSolve))
-
-
-! mrp temp testing - is uBcl vert sum zero?
-!            do iEdge=1,block % mesh % nEdges
-!              uhSum = (sshEdge + block % mesh % hZLevel % array(1)) * block % state % time_levs(1) % state % uBcl % array(1,iEdge)
-!              hSum  =  sshEdge + block % mesh % hZLevel % array(1)
-
-!              do k=2,block % mesh % maxLevelEdgeTop % array(iEdge)
-!                 uhSum = uhSum + block % mesh % hZLevel % array(k) *  block % state % time_levs(1) % state % uBcl % array(k,iEdge)
-!                 hSum  =  hSum + block % mesh % hZLevel % array(k)
-!              enddo
-!              block % state % time_levs(1) % state % FBtr % array(iEdge) = uhSum/hSum
-
-!           enddo ! iEdge
-
-!print *, 'uBcl vert sum IC',minval(block % state % time_levs(1) % state % FBtr % array(1:block % mesh % nEdgesSolve)), &amp;
-!                            maxval(block % state % time_levs(1) % state % FBtr % array(1:block % mesh % nEdgesSolve))
-
-! mrp temp testing - is uBcl vert sum zero? end
-
       block =&gt; block % next
 
    end do


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_mpas_core.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_mpas_core.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_mpas_core.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_mpas_core.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_mpas_core.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_mpas_core.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_mpas_core.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_mpas_core.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_mpas_core.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_mpas_core.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_mpas_core.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_mpas_core.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_mpas_core.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_mpas_core.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_mpas_core.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_mpas_core.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_mpas_core.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_mpas_core.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_mpas_core.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_mpas_core.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_mpas_core.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_mpas_core.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_mpas_core.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_restoring.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_restoring.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_restoring.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_restoring.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_restoring.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_restoring.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_restoring.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_restoring.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_restoring.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_restoring.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_restoring.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_restoring.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_restoring.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_restoring.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_restoring.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_restoring.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_restoring.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_restoring.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_restoring.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_restoring.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_restoring.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_restoring.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_restoring.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_tendency.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_tendency.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_tendency.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -186,7 +186,8 @@
       type (mesh_type), intent(in) :: grid
 
       real (kind=RKIND), dimension(:,:), pointer :: &amp;
-        h_edge, u, pressure, tend_u, vorticity, ke, ke_edge, pv_edge, &amp;
+        h_edge, h, u, rho, zMid, pressure, &amp;
+        tend_u, circulation, vorticity, ke, ke_edge, pv_edge, &amp;
         MontPot, wTop, divergence, vertViscTopOfEdge
 
       real (kind=RKIND), dimension(:,:), pointer :: u_src
@@ -196,7 +197,9 @@
       call mpas_timer_start(&quot;ocn_tend_u&quot;)
 
       u           =&gt; s % u % array
+      rho         =&gt; s % rho % array
       wTop        =&gt; s % wTop % array
+      zMid        =&gt; s % zMid % array
       h_edge      =&gt; s % h_edge % array
       vorticity   =&gt; s % vorticity % array
       divergence  =&gt; s % divergence % array
@@ -229,7 +232,7 @@
       ! velocity tendency: vertical advection term -w du/dz
       !
       call mpas_timer_start(&quot;vadv&quot;, .false., velVadvTimer)
-      call ocn_vel_vadv_tend(grid, u, wtop, tend_u, err)
+      call ocn_vel_vadv_tend(grid, u, h_edge, wtop, tend_u, err)
       call mpas_timer_stop(&quot;vadv&quot;, velVadvTimer)
 
       !
@@ -237,9 +240,9 @@
       !
       call mpas_timer_start(&quot;pressure grad&quot;, .false., velPgradTimer)
       if (config_vert_grid_type.eq.'isopycnal') then
-          call ocn_vel_pressure_grad_tend(grid, MontPot, tend_u, err)
-      elseif (config_vert_grid_type.eq.'zlevel') then
-          call ocn_vel_pressure_grad_tend(grid, pressure, tend_u, err)
+          call ocn_vel_pressure_grad_tend(grid, MontPot,  zMid, rho, tend_u, err)
+      else
+          call ocn_vel_pressure_grad_tend(grid, pressure, zMid, rho, tend_u, err)
       end if
       call mpas_timer_stop(&quot;pressure grad&quot;, velPgradTimer)
 
@@ -322,7 +325,7 @@
       vertDiffTopOfCell =&gt; d % vertDiffTopOfCell % array
 
       tend_tr     =&gt; tend % tracers % array
-                  
+
       !
       ! initialize tracer tendency (RHS of tracer equation) to zero.
       !
@@ -346,7 +349,7 @@
       !
 
       call mpas_timer_start(&quot;vadv&quot;, .false., tracerVadvTimer)
-      call ocn_tracer_vadv_tend(grid, wtop, tracers, tend_tr, err)
+      call ocn_tracer_vadv_tend(grid, h, wtop, tracers, tend_tr, err)
       call mpas_timer_stop(&quot;vadv&quot;, tracerVadvTimer)
 
       !
@@ -437,10 +440,10 @@
 
       real (kind=RKIND), dimension(:), pointer :: &amp;
         h_s, fVertex, dvEdge, dcEdge, areaCell, areaTriangle, &amp;
-        hZLevel
+        zTopZLevel
       real (kind=RKIND), dimension(:,:), pointer :: &amp;
         weightsOnEdge, kiteAreasOnVertex, h_edge, h, u, v, pressure,&amp;
-        circulation, vorticity, ke, ke_edge, MontPot, &amp;
+        circulation, vorticity, ke, ke_edge, MontPot, wTop, zMid, &amp;
         pv_edge, pv_vertex, pv_cell, gradPVn, gradPVt, divergence, &amp;
         rho, temperature, salinity, kev, kevc
       real (kind=RKIND), dimension(:,:,:), pointer :: tracers, deriv_two
@@ -466,6 +469,7 @@
       rho         =&gt; s % rho % array
       MontPot     =&gt; s % MontPot % array
       pressure    =&gt; s % pressure % array
+      zMid        =&gt; s % zMid % array
       tracers     =&gt; s % tracers % array
 
       weightsOnEdge     =&gt; grid % weightsOnEdge % array
@@ -483,7 +487,7 @@
       areaTriangle      =&gt; grid % areaTriangle % array
       h_s               =&gt; grid % h_s % array
       fVertex           =&gt; grid % fVertex % array
-      hZLevel           =&gt; grid % hZLevel % array
+      zTopZLevel        =&gt; grid % zTopZLevel % array
       deriv_two         =&gt; grid % deriv_two % array
       maxLevelCell      =&gt; grid % maxLevelCell % array
       maxLevelEdgeTop   =&gt; grid % maxLevelEdgeTop % array
@@ -505,8 +509,8 @@
       ! mrp 101115 note: in order to include flux boundary conditions, we will need to 
       ! assign h_edge for maxLevelEdgeTop:maxLevelEdgeBot in the following section
 
-      ! mrp 110516 efficiency note: For z-level, only do this on level 1.  h_edge for all
-      ! lower levels is defined by hZlevel.
+      ! initialize h_edge to avoid divide by zero and NaN problems.
+      h_edge = -1.0e34
 
       h_edge = -1.0e34
 
@@ -773,7 +777,7 @@
       !
       ! For an isopycnal model, density should remain constant.
       ! For zlevel, calculate in-situ density
-      if (config_vert_grid_type.eq.'zlevel') then
+      if (config_vert_grid_type.ne.'isopycnal') then
          call mpas_timer_start(&quot;equation of state&quot;, .false., diagEOSTimer)
          call ocn_equation_of_state_rho(s, grid, 0, 'relative', err)
       ! mrp 110324 In order to visualize rhoDisplaced, include the following
@@ -813,31 +817,37 @@
         end do
         deallocate(pTop)
 
-      elseif (config_vert_grid_type.eq.'zlevel') then
+      else
 
-        ! For z-level model.
-        ! Compute pressure at middle of each level.  
-        ! At k=1, where p is pressure at a depth of hZLevel(1)/2, not
-        ! pressure at middle of layer including SSH.
-
         do iCell=1,nCells
-           ! compute pressure for z-level coordinates
+           ! pressure for generalized coordinates
            ! assume atmospheric pressure at the surface is zero for now.
-
            pressure(1,iCell) = rho(1,iCell)*gravity &amp;
-              * (h(1,iCell)-0.5*hZLevel(1)) 
+              * 0.5*h(1,iCell)
 
            do k=2,maxLevelCell(iCell)
               pressure(k,iCell) = pressure(k-1,iCell)  &amp;
-                + 0.5*gravity*(  rho(k-1,iCell)*hZLevel(k-1) &amp;
-                               + rho(k  ,iCell)*hZLevel(k  ))
+                + 0.5*gravity*(  rho(k-1,iCell)*h(k-1,iCell) &amp;
+                               + rho(k  ,iCell)*h(k  ,iCell))
            end do
 
+           ! Compute zMid, the z-coordinate of the middle of the layer.
+           ! This is used for the rho g grad z momentum term.
+           k = maxLevelCell(iCell)
+           zMid(k:nVertLevels,iCell) = zTopZLevel(k+1) + 0.5*h(k,iCell)
+
+           do k=maxLevelCell(iCell)-1, 1, -1
+              zMid(k,iCell) = zMid(k+1,iCell)  &amp;
+                + 0.5*(  h(k+1,iCell) &amp;
+                       + h(k  ,iCell))
+           end do
+
         end do
 
       endif
 
-      call ocn_wtop(s,grid)
+! mrp 111206 remove
+!      call ocn_wtop(s,grid)
 
    end subroutine ocn_diagnostic_solve!}}}
 
@@ -870,16 +880,16 @@
 
       ! mrp 110512 could clean this out, remove pointers?
       integer :: iEdge, iCell, iVertex, k, cell1, cell2, vertex1, vertex2, eoe, i, j, cov
-      real (kind=RKIND) :: flux, vorticity_abs, h_vertex, workpv, rho0Inv, invAreaCell
+      real (kind=RKIND) :: flux, vorticity_abs, h_vertex, workpv, rho0Inv, hSum
 
       integer :: nCells, nEdges, nVertices, nVertLevels, vertexDegree
 
 
       real (kind=RKIND), dimension(:), pointer :: &amp;
-        h_s, fVertex, fEdge, dvEdge, dcEdge, areaCell, areaTriangle, &amp;
-        hZLevel
-      real (kind=RKIND), dimension(:,:), pointer :: u,wTop
-      real (kind=RKIND), dimension(:,:), allocatable:: div_u
+        h_s, fVertex, fEdge, dvEdge, dcEdge, areaCell, areaTriangle
+      real (kind=RKIND), dimension(:,:), pointer :: u,h,wTop, h_edge
+      real (kind=RKIND), dimension(:,:), allocatable:: div_hu
+      real (kind=RKIND), dimension(:), allocatable:: div_hu_btr, h_tend_col, h_weights
 
       integer, dimension(:,:), pointer :: cellsOnEdge, cellsOnVertex, &amp;
         verticesOnEdge, edgesOnCell, edgesOnEdge, edgesOnVertex, &amp;
@@ -888,13 +898,13 @@
         maxLevelCell, maxLevelEdgeTop, maxLevelEdgeBot, &amp;
         maxLevelVertexBot,  maxLevelVertexTop
 
-
       u           =&gt; s % u % array
+      h           =&gt; s % h % array
       wTop        =&gt; s % wTop % array
+      h_edge      =&gt; s % h_edge % array
 
       areaCell          =&gt; grid % areaCell % array
       cellsOnEdge       =&gt; grid % cellsOnEdge % array
-      hZLevel           =&gt; grid % hZLevel % array
       maxLevelCell      =&gt; grid % maxLevelCell % array
       maxLevelEdgeBot   =&gt; grid % maxLevelEdgeBot % array
       dvEdge            =&gt; grid % dvEdge % array
@@ -903,7 +913,33 @@
       nEdges      = grid % nEdges
       nVertLevels = grid % nVertLevels
 
+      allocate(div_hu(nVertLevels,nCells+1), div_hu_btr(nCells+1), &amp;
+          h_tend_col(nVertLevels), h_weights(nVertLevels))
+
       !
+      ! Compute div(h^{edge} u) for each cell
+      ! See Ringler et al. (2010) jcp paper, eqn 19, 21, and fig. 3.
+      !
+      div_hu(:,:) = 0.0
+      do iEdge=1,nEdges
+         cell1 = cellsOnEdge(1,iEdge)
+         cell2 = cellsOnEdge(2,iEdge)
+         do k=1,maxLevelEdgeBot(iEdge)
+            flux = u(k,iEdge) * dvEdge(iEdge) * h_edge(k,iEdge) 
+            div_hu(k,cell1) = div_hu(k,cell1) + flux
+            div_hu(k,cell2) = div_hu(k,cell2) - flux
+         end do 
+      end do 
+
+      do iCell=1,nCells
+         div_hu_btr(iCell) = 0.0
+         do k=1,maxLevelCell(iCell)
+            div_hu(k,iCell) = div_hu(k,iCell) / areaCell(iCell)
+            div_hu_btr(iCell) = div_hu_btr(iCell) + div_hu(k,iCell)
+         end do
+      end do
+
+      !
       ! vertical velocity through layer interface
       !
       !dwj: 10/25/2011 - Need to explore isopycnal vs zlevel flags
@@ -913,38 +949,93 @@
 
       elseif (config_vert_grid_type.eq.'zlevel') then
 
-        !
-        ! Compute div(u) for each cell
-        ! See Ringler et al. (2010) jcp paper, eqn 19, 21, and fig. 3.
-        !
-        allocate(div_u(nVertLevels,nCells+1))
-        div_u(:,:) = 0.0
-        do iEdge=1,nEdges
-           cell1 = cellsOnEdge(1,iEdge)
-           cell2 = cellsOnEdge(2,iEdge)
-           do k=2,maxLevelEdgeBot(iEdge)
-              flux = u(k,iEdge) * dvEdge(iEdge) 
-              div_u(k,cell1) = div_u(k,cell1) + flux
-              div_u(k,cell2) = div_u(k,cell2) - flux
-           end do 
-        end do 
+        do iCell=1,nCells
+           ! Vertical velocity through layer interface at top and 
+           ! bottom is zero.
+           wTop(1,iCell) = 0.0
+           wTop(maxLevelCell(iCell)+1,iCell) = 0.0
+           do k=maxLevelCell(iCell),2,-1
+              wTop(k,iCell) = wTop(k+1,iCell) - div_hu(k,iCell)
+           end do
+        end do
 
+      elseif (config_vert_grid_type.eq.'zstar1') then
+
+        ! This is a testing setting.  The computation is similar to zstar,
+        ! but the weights are all in the top layer, so is a bit-for-bit 
+        ! match with zlevel.
+
         do iCell=1,nCells
+
+           h_tend_col = 0.0
+           h_tend_col(1) = - div_hu_btr(iCell)
+
            ! Vertical velocity through layer interface at top and 
            ! bottom is zero.
            wTop(1,iCell) = 0.0
            wTop(maxLevelCell(iCell)+1,iCell) = 0.0
-           invAreaCell = 1.0 / areaCell(iCell)
 
            do k=maxLevelCell(iCell),2,-1
-              wTop(k,iCell) = wTop(k+1,iCell) &amp;
-                 - div_u(k,iCell)*invAreaCell*hZLevel(k)
+              wTop(k,iCell) = wTop(k+1,iCell) - div_hu(k,iCell) - h_tend_col(k)
            end do
         end do
-        deallocate(div_u)
 
+      elseif (config_vert_grid_type.eq.'zstar') then
+
+        ! Distribute the change in total column height due to the external
+        ! mode, div_hu_btr, among all the layers.  Distribute in proportion
+        ! to the layer thickness.
+
+        do iCell=1,nCells
+
+           hSum = 0.0
+           do k=1,maxLevelCell(iCell)
+              h_tend_col(k) = - h(k,iCell)*div_hu_btr(iCell)
+              hSum = hSum + h(k,iCell)
+           end do
+           h_tend_col = h_tend_col / hSum
+
+           ! Vertical velocity through layer interface at top and 
+           ! bottom is zero.
+           wTop(1,iCell) = 0.0
+           wTop(maxLevelCell(iCell)+1,iCell) = 0.0
+           do k=maxLevelCell(iCell),2,-1
+              wTop(k,iCell) = wTop(k+1,iCell) - div_hu(k,iCell) - h_tend_col(k)
+           end do
+        end do
+
+      elseif (config_vert_grid_type.eq.'zstarWeights') then
+
+        ! This is a test with other weights, not meant to be permanent.
+
+        h_weights = 0.0
+        h_weights(1:5) = 1.0
+        do k=1,10
+           h_weights(5+k) = 1.0-k*0.1
+        end do
+
+        do iCell=1,nCells
+
+           hSum = 0.0
+           do k=1,maxLevelCell(iCell)
+              h_tend_col(k) = - h_weights(k)*h(k,iCell)*div_hu_btr(iCell)
+              hSum = hSum + h_weights(k)*h(k,iCell)
+           end do
+           h_tend_col = h_tend_col / hSum
+
+           ! Vertical velocity through layer interface at top and 
+           ! bottom is zero.
+           wTop(1,iCell) = 0.0
+           wTop(maxLevelCell(iCell)+1,iCell) = 0.0
+           do k=maxLevelCell(iCell),2,-1
+              wTop(k,iCell) = wTop(k+1,iCell) - div_hu(k,iCell) - h_tend_col(k)
+           end do
+        end do
+
       endif
 
+      deallocate(div_hu, div_hu_btr, h_tend_col, h_weights)
+
    end subroutine ocn_wtop!}}}
 
 !***********************************************************************


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tendency.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tendency.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tendency.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tendency.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tendency.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tendency.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tendency.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tendency.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tendency.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tendency.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tendency.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tendency.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tendency.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tendency.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tendency.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tendency.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tendency.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tendency.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tendency.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tendency.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tendency.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tendency.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tendency.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_thick_hadv.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_thick_hadv.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_thick_hadv.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -104,7 +104,7 @@
       integer :: iEdge, nEdges, cell1, cell2, nVertLevels, k
       integer :: iCell, nCells
 
-      integer, dimension(:), pointer :: maxLevelEdgeTop
+      integer, dimension(:), pointer :: maxLevelEdgeBot, MaxLevelCell
       integer, dimension(:,:), pointer :: cellsOnEdge
 
       real (kind=RKIND) :: flux, invAreaCell1, invAreaCell2
@@ -124,47 +124,27 @@
       nCells = grid % nCells
       nVertLevels = grid % nVertLevels
 
-      maxLevelEdgeTop =&gt; grid % maxLevelEdgeTop % array
+      maxLevelCell      =&gt; grid % maxLevelCell % array
+      maxLevelEdgeBot   =&gt; grid % maxLevelEdgeBot % array
       cellsOnEdge =&gt; grid % cellsOnEdge % array
       dvEdge =&gt; grid % dvEdge % array
       areaCell =&gt; grid % areaCell % array
 
-      !dwj: 10/25/2011 - Need to explore isopycnal vs zlevel flags
-      if (config_vert_grid_type.eq.'isopycnal') then

-         do iEdge=1,nEdges
-            cell1 = cellsOnEdge(1,iEdge)
-            cell2 = cellsOnEdge(2,iEdge)
-
-            invAreaCell1 = 1.0 / areaCell(cell1)
-            invAreaCell2 = 1.0 / areaCell(cell2)
-
-            do k=1,nVertLevels
-               flux = u(k,iEdge) * dvEdge(iEdge) * h_edge(k,iEdge)
-               tend(k,cell1) = tend(k,cell1) - flux * invAreaCell1
-               tend(k,cell2) = tend(k,cell2) + flux * invAreaCell2
-            end do
+      do iEdge=1,nEdges
+         cell1 = cellsOnEdge(1,iEdge)
+         cell2 = cellsOnEdge(2,iEdge)
+         do k=1,maxLevelEdgeBot(iEdge)
+            flux = u(k,iEdge) * dvEdge(iEdge) * h_edge(k,iEdge)
+            tend(k,cell1) = tend(k,cell1) - flux 
+            tend(k,cell2) = tend(k,cell2) + flux 
          end do
-
-      elseif (config_vert_grid_type.eq.'zlevel') then
-
-         do iEdge=1,nEdges
-            cell1 = cellsOnEdge(1,iEdge)
-            cell2 = cellsOnEdge(2,iEdge)
-
-            invAreaCell1 = 1.0 / areaCell(cell1)
-            invAreaCell2 = 1.0 / areaCell(cell2)
-
-            do k=1,min(1,maxLevelEdgeTop(iEdge))
-               flux = u(k,iEdge) * dvEdge(iEdge) * h_edge(k,iEdge)
-               tend(k,cell1) = tend(k,cell1) - flux * invAreaCell1
-               tend(k,cell2) = tend(k,cell2) + flux * invAreaCell2
-            end do
+      end do
+      do iCell=1,nCells
+         do k=1,maxLevelCell(iCell)
+            tend(k,iCell) = tend(k,iCell) / areaCell(iCell)
          end do
+      end do
 
-      endif ! config_vert_grid_type
-
-
    !--------------------------------------------------------------------
 
    end subroutine ocn_thick_hadv_tend!}}}


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_thick_hadv.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_thick_hadv.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_thick_hadv.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_thick_hadv.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_thick_hadv.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_thick_hadv.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_thick_hadv.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_thick_hadv.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_thick_hadv.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_thick_hadv.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_thick_hadv.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_thick_hadv.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_thick_hadv.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_thick_hadv.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_thick_hadv.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_thick_hadv.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_thick_hadv.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_thick_hadv.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_thick_hadv.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_thick_hadv.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_thick_hadv.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_thick_hadv.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_thick_hadv.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_thick_vadv.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_thick_vadv.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_thick_vadv.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -98,7 +98,8 @@
       !
       !-----------------------------------------------------------------
 
-      integer :: iCell, nCells
+      integer :: iCell, nCells, nVertLevels, k
+      integer, dimension(:), pointer :: MaxLevelCell
 
       !-----------------------------------------------------------------
       !
@@ -110,16 +111,17 @@
 
       err = 0
 
+      maxLevelCell      =&gt; grid % maxLevelCell % array
+
       nCells = grid % nCells
+      nVertLevels = grid % nVertLevels
 
-      ! dwj 10/25/2011 - Need to explore isopycnal vs zlevel flags
-      if (config_vert_grid_type.eq.'zlevel') then
-        do iCell=1,nCells
-           tend(1,iCell) =   tend(1,iCell) + wTop(2,iCell)
-        end do
-      endif ! coordinate type
+      do iCell=1,nCells
+         do k=1,maxLevelCell(iCell)
+            tend(k,iCell) = tend(k,iCell) + wTop(k+1,iCell) - wTop(k,iCell)
+         end do
+      end do
 
-
    !--------------------------------------------------------------------
 
    end subroutine ocn_thick_vadv_tend!}}}


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_thick_vadv.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_thick_vadv.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_thick_vadv.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_thick_vadv.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_thick_vadv.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_thick_vadv.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_thick_vadv.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_thick_vadv.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_thick_vadv.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_thick_vadv.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_thick_vadv.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_thick_vadv.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_thick_vadv.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_thick_vadv.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_thick_vadv.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_thick_vadv.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_thick_vadv.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_thick_vadv.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_thick_vadv.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_thick_vadv.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_thick_vadv.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_thick_vadv.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_thick_vadv.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_time_integration.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_time_integration.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_time_integration.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_time_integration.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_time_integration.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_time_integration.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_time_integration.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_time_integration.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_time_integration.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_time_integration.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_time_integration.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_time_integration.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_time_integration.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_time_integration.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_time_integration.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_time_integration.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_time_integration.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_time_integration.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_time_integration.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_time_integration.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_time_integration.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_time_integration.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_time_integration.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_time_integration_rk4.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_time_integration_rk4.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_time_integration_rk4.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -166,6 +166,10 @@
         call mpas_timer_start(&quot;RK4-tendency computations&quot;)
         block =&gt; domain % blocklist
         do while (associated(block))
+
+           ! mrp 111206 put ocn_wtop call at top for ALE
+           call ocn_wtop(provis, block % mesh)
+
            if (.not.config_implicit_vertical_mix) then
               call ocn_vmix_coefs(block % mesh, provis, block % diagnostics, err)
            end if
@@ -366,8 +370,8 @@
       integer :: nCells, nEdges, nVertices, nVertLevels, nEdgesSolve
       real (kind=RKIND) :: vertSum, uhSum, hSum, sshEdge
       real (kind=RKIND), dimension(:), pointer :: &amp;
-        h_s, fVertex, fEdge, dvEdge, dcEdge, areaCell, areaTriangle, &amp;
-        zMidZLevel, zTopZLevel, meshScalingDel2, meshScalingDel4
+        h_s, dvEdge, dcEdge, areaCell, areaTriangle, &amp;
+        meshScalingDel2, meshScalingDel4
       real (kind=RKIND), dimension(:,:), pointer :: &amp;
         weightsOnEdge, kiteAreasOnVertex, h_edge, h, u, v, pressure, &amp;
         tend_u, circulation, vorticity, ke, ke_edge, pv_edge, &amp;
@@ -422,11 +426,6 @@
       areaCell          =&gt; grid % areaCell % array
       areaTriangle      =&gt; grid % areaTriangle % array
       h_s               =&gt; grid % h_s % array
-! mrp 110516 cleanup fvertex fedge not used in this subroutine
-      fVertex           =&gt; grid % fVertex % array
-      fEdge             =&gt; grid % fEdge % array
-      zMidZLevel        =&gt; grid % zMidZLevel % array
-      zTopZLevel        =&gt; grid % zTopZLevel % array
       maxLevelCell      =&gt; grid % maxLevelCell % array
       maxLevelEdgeTop      =&gt; grid % maxLevelEdgeTop % array
       maxLevelVertexBot    =&gt; grid % maxLevelVertexBot % array
@@ -443,15 +442,12 @@
 
            do iEdge=1,grid % nEdges
 
-              ! I am using hZLevel here.  This assumes that SSH is zero everywhere already,
-              ! which should be the case if the barotropic mode is filtered.
-              ! The more general case is to use sshEdge or h_edge.
-              uhSum = (grid % hZLevel % array(1)) * tend_u(1,iEdge)
-              hSum  =  grid % hZLevel % array(1)
+              uhSum = (h_edge(1,iEdge)) * tend_u(1,iEdge)
+              hSum  =  h_edge(1,iEdge)
 
               do k=2,grid % maxLevelEdgeTop % array(iEdge)
-                 uhSum = uhSum + grid % hZLevel % array(k) * tend_u(k,iEdge)
-                 hSum  =  hSum + grid % hZLevel % array(k)
+                 uhSum = uhSum + h_edge(k,iEdge) * tend_u(k,iEdge)
+                 hSum  =  hSum + h_edge(k,iEdge)
               enddo
 
               vertSum = uhSum/hSum
@@ -489,8 +485,8 @@
       integer :: nCells, nEdges, nVertices, nVertLevels, nEdgesSolve
       real (kind=RKIND) :: vertSum, uhSum, hSum, sshEdge
       real (kind=RKIND), dimension(:), pointer :: &amp;
-        h_s, fVertex, fEdge, dvEdge, dcEdge, areaCell, areaTriangle, &amp;
-        zMidZLevel, zTopZLevel, meshScalingDel2, meshScalingDel4
+        h_s, dvEdge, dcEdge, areaCell, areaTriangle, &amp;
+        meshScalingDel2, meshScalingDel4
       real (kind=RKIND), dimension(:,:), pointer :: &amp;
         weightsOnEdge, kiteAreasOnVertex, h_edge, h, u, v, pressure, &amp;
         tend_u, circulation, vorticity, ke, ke_edge, pv_edge, &amp;
@@ -544,11 +540,6 @@
       areaCell          =&gt; grid % areaCell % array
       areaTriangle      =&gt; grid % areaTriangle % array
       h_s               =&gt; grid % h_s % array
-! mrp 110516 cleanup fvertex fedge not used in this subroutine
-      fVertex           =&gt; grid % fVertex % array
-      fEdge             =&gt; grid % fEdge % array
-      zMidZLevel        =&gt; grid % zMidZLevel % array
-      zTopZLevel        =&gt; grid % zTopZLevel % array
       maxLevelCell      =&gt; grid % maxLevelCell % array
       maxLevelEdgeTop      =&gt; grid % maxLevelEdgeTop % array
       maxLevelVertexBot    =&gt; grid % maxLevelVertexBot % array
@@ -563,15 +554,12 @@
 
            do iEdge=1,grid % nEdges
 
-              ! I am using hZLevel here.  This assumes that SSH is zero everywhere already,
-              ! which should be the case if the barotropic mode is filtered.
-              ! The more general case is to use sshedge or h_edge.
-              uhSum = (grid % hZLevel % array(1)) * u(1,iEdge)
-              hSum  =  grid % hZLevel % array(1)
+              uhSum = (h_edge(1,iEdge)) * u(1,iEdge)
+              hSum  =  h_edge(1,iEdge)
 
               do k=2,grid % maxLevelEdgeTop % array(iEdge)
-                 uhSum = uhSum + grid % hZLevel % array(k) * u(k,iEdge)
-                 hSum  =  hSum + grid % hZLevel % array(k)
+                 uhSum = uhSum + h_edge(k,iEdge) * u(k,iEdge)
+                 hSum  =  hSum + h_edge(k,iEdge)
               enddo
 
               vertSum = uhSum/hSum


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_time_integration_rk4.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_time_integration_rk4.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_time_integration_rk4.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_time_integration_rk4.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_time_integration_rk4.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_time_integration_rk4.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_time_integration_rk4.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_time_integration_rk4.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_time_integration_rk4.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_time_integration_rk4.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_time_integration_rk4.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_time_integration_rk4.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_time_integration_rk4.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_time_integration_rk4.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_time_integration_rk4.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_time_integration_rk4.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_time_integration_rk4.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_time_integration_rk4.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_time_integration_rk4.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_time_integration_rk4.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_time_integration_rk4.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_time_integration_rk4.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_time_integration_rk4.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_time_integration_split.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_time_integration_split.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_time_integration_split.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -1054,8 +1054,8 @@
       integer :: nCells, nEdges, nVertices, nVertLevels, nEdgesSolve
       real (kind=RKIND) :: vertSum, uhSum, hSum, sshEdge
       real (kind=RKIND), dimension(:), pointer :: &amp;
-        h_s, fVertex, fEdge, dvEdge, dcEdge, areaCell, areaTriangle, &amp;
-        zMidZLevel, zTopZLevel, meshScalingDel2, meshScalingDel4
+        h_s, dvEdge, dcEdge, areaCell, areaTriangle, &amp;
+        meshScalingDel2, meshScalingDel4
       real (kind=RKIND), dimension(:,:), pointer :: &amp;
         weightsOnEdge, kiteAreasOnVertex, h_edge, h, u, v, pressure, &amp;
         tend_u, circulation, vorticity, ke, ke_edge, pv_edge, &amp;
@@ -1110,11 +1110,6 @@
       areaCell          =&gt; grid % areaCell % array
       areaTriangle      =&gt; grid % areaTriangle % array
       h_s               =&gt; grid % h_s % array
-! mrp 110516 cleanup fvertex fedge not used in this subroutine
-      fVertex           =&gt; grid % fVertex % array
-      fEdge             =&gt; grid % fEdge % array
-      zMidZLevel        =&gt; grid % zMidZLevel % array
-      zTopZLevel        =&gt; grid % zTopZLevel % array
       maxLevelCell      =&gt; grid % maxLevelCell % array
       maxLevelEdgeTop      =&gt; grid % maxLevelEdgeTop % array
       maxLevelVertexBot    =&gt; grid % maxLevelVertexBot % array
@@ -1174,8 +1169,8 @@
       integer :: nCells, nEdges, nVertices, nVertLevels, nEdgesSolve
       real (kind=RKIND) :: vertSum, uhSum, hSum, sshEdge
       real (kind=RKIND), dimension(:), pointer :: &amp;
-        h_s, fVertex, fEdge, dvEdge, dcEdge, areaCell, areaTriangle, &amp;
-        zMidZLevel, zTopZLevel, meshScalingDel2, meshScalingDel4
+        h_s, dvEdge, dcEdge, areaCell, areaTriangle, &amp;
+        meshScalingDel2, meshScalingDel4
       real (kind=RKIND), dimension(:,:), pointer :: &amp;
         weightsOnEdge, kiteAreasOnVertex, h_edge, h, u, v, pressure, &amp;
         tend_u, circulation, vorticity, ke, ke_edge, pv_edge, &amp;
@@ -1229,11 +1224,6 @@
       areaCell          =&gt; grid % areaCell % array
       areaTriangle      =&gt; grid % areaTriangle % array
       h_s               =&gt; grid % h_s % array
-! mrp 110516 cleanup fvertex fedge not used in this subroutine
-      fVertex           =&gt; grid % fVertex % array
-      fEdge             =&gt; grid % fEdge % array
-      zMidZLevel        =&gt; grid % zMidZLevel % array
-      zTopZLevel        =&gt; grid % zTopZLevel % array
       maxLevelCell      =&gt; grid % maxLevelCell % array
       maxLevelEdgeTop      =&gt; grid % maxLevelEdgeTop % array
       maxLevelVertexBot    =&gt; grid % maxLevelVertexBot % array


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_time_integration_split.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_time_integration_split.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_time_integration_split.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_time_integration_split.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_time_integration_split.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_time_integration_split.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_time_integration_split.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_time_integration_split.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_time_integration_split.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_time_integration_split.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_time_integration_split.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_time_integration_split.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_time_integration_split.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_time_integration_split.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_time_integration_split.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_time_integration_split.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_time_integration_split.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_time_integration_split.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_time_integration_split.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_time_integration_split.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_time_integration_split.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_time_integration_split.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_time_integration_split.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_hadv.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_hadv.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_hadv.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_hadv.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_hadv.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_hadv.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_hadv.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_hadv.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_hadv.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_hadv.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_hadv.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_hadv.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_hadv.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_hadv.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_hadv.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_hadv.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_hadv.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_hadv.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_hadv.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_hadv.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_hadv.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_hadv.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_hadv.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_hadv2.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_hadv2.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_hadv2.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_hadv2.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_hadv2.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_hadv2.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_hadv2.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_hadv2.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_hadv2.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_hadv2.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_hadv2.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_hadv2.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_hadv2.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_hadv2.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_hadv2.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_hadv2.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_hadv2.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_hadv2.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_hadv2.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_hadv2.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_hadv2.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_hadv2.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_hadv2.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_hadv3.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_hadv3.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_hadv3.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_hadv3.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_hadv3.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_hadv3.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_hadv3.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_hadv3.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_hadv3.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_hadv3.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_hadv3.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_hadv3.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_hadv3.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_hadv3.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_hadv3.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_hadv3.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_hadv3.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_hadv3.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_hadv3.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_hadv3.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_hadv3.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_hadv3.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_hadv3.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_hadv4.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_hadv4.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_hadv4.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_hadv4.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_hadv4.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_hadv4.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_hadv4.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_hadv4.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_hadv4.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_hadv4.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_hadv4.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_hadv4.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_hadv4.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_hadv4.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_hadv4.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_hadv4.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_hadv4.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_hadv4.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_hadv4.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_hadv4.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_hadv4.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_hadv4.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_hadv4.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_hmix.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_hmix.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_hmix.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_hmix.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_hmix.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_hmix.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_hmix.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_hmix.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_hmix.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_hmix.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_hmix.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_hmix.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_hmix.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_hmix.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_hmix.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_hmix.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_hmix.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_hmix.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_hmix.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_hmix.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_hmix.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_hmix.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_hmix.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_hmix_del2.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_hmix_del2.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_hmix_del4.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_hmix_del4.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -70,7 +70,7 @@
 !
 !-----------------------------------------------------------------------
 
-   subroutine ocn_tracer_vadv_tend(grid, wTop, tracers, tend, err)!{{{
+   subroutine ocn_tracer_vadv_tend(grid, h, wTop, tracers, tend, err)!{{{
 
       !-----------------------------------------------------------------
       !
@@ -79,6 +79,7 @@
       !-----------------------------------------------------------------
 
       real (kind=RKIND), dimension(:,:), intent(in) :: &amp;
+         h, &amp;    !&lt; Input: layer thickness
          wTop    !&lt; Input: vertical tracer in top layer
 
       real (kind=RKIND), dimension(:,:,:), intent(in) :: &amp;
@@ -124,8 +125,8 @@
 
       if(.not.vadvOn) return
 
-      call ocn_tracer_vadv_stencil_tend(grid, wTop, tracers, tend, err1)
-      call ocn_tracer_vadv_spline_tend(grid, wTop, tracers, tend, err2)
+      call ocn_tracer_vadv_stencil_tend(grid, h, wTop, tracers, tend, err1)
+      call ocn_tracer_vadv_spline_tend(grid, h, wTop, tracers, tend, err2)
 
       err = ior(err1, err2)
 
@@ -166,7 +167,7 @@
       err = 0
       vadvOn = .false.
 
-      if (config_vert_grid_type.eq.'zlevel') then
+      if (config_vert_grid_type.ne.'isopycnal') then
           vadvOn = .true.
           call ocn_tracer_vadv_stencil_init(err1)
           call ocn_tracer_vadv_spline_init(err2)


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_vadv.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_vadv.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_spline.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_spline.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_spline.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -72,7 +72,7 @@
 !
 !-----------------------------------------------------------------------
 
-   subroutine ocn_tracer_vadv_spline_tend(grid, wTop, tracers, tend, err)!{{{
+   subroutine ocn_tracer_vadv_spline_tend(grid, h, wTop, tracers, tend, err)!{{{
 
       !-----------------------------------------------------------------
       !
@@ -81,6 +81,7 @@
       !-----------------------------------------------------------------
 
       real (kind=RKIND), dimension(:,:), intent(in) :: &amp;
+         h, &amp;    !&lt; Input: layer thickness
          wTop    !&lt; Input: vertical tracer in top layer
 
       real (kind=RKIND), dimension(:,:,:), intent(in) :: &amp;
@@ -127,10 +128,11 @@
       if(.not.splineOn) return
 
       call mpas_timer_start(&quot;spline 2&quot;, .false., spline2_timer)
-      call ocn_tracer_vadv_spline2_tend(grid, wTop, tracers, tend, err1)
+      call ocn_tracer_vadv_spline2_tend(grid, h, wTop, tracers, tend, err1)
       call mpas_timer_stop(&quot;spline 2&quot;, spline2_timer)
+
       call mpas_timer_start(&quot;spline 3&quot;, .false., spline3_timer)
-      call ocn_tracer_vadv_spline3_tend(grid, wTop, tracers, tend, err2)
+      call ocn_tracer_vadv_spline3_tend(grid, h, wTop, tracers, tend, err2)
       call mpas_timer_stop(&quot;spline 3&quot;, spline3_timer)
 
       err = ior(err1, err2)


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_spline.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv_spline.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -63,7 +63,7 @@
 !
 !-----------------------------------------------------------------------
 
-   subroutine ocn_tracer_vadv_spline2_tend(grid, wTop, tracers, tend, err)!{{{
+   subroutine ocn_tracer_vadv_spline2_tend(grid, h, wTop, tracers, tend, err)!{{{
 
       !-----------------------------------------------------------------
       !
@@ -72,6 +72,7 @@
       !-----------------------------------------------------------------
 
       real (kind=RKIND), dimension(:,:), intent(in) :: &amp;
+         h, &amp;    !&lt; Input: layer thickness
          wTop    !&lt; Input: vertical tracer in top layer
 
       real (kind=RKIND), dimension(:,:,:), intent(in) :: &amp;
@@ -107,8 +108,6 @@
 
       integer, dimension(:), pointer :: maxLevelCell
 
-      real (kind=RKIND), dimension(:), pointer :: hRatioZLevelK, hRatioZLevelKm1
-
       real (kind=RKIND), dimension(:,:,:), allocatable :: tracerTop
 
       !-----------------------------------------------------------------
@@ -130,20 +129,18 @@
       num_tracers = size(tracers, 1)
       maxLevelCell =&gt; grid % maxLevelCell % array
 
-      hRatioZLevelK =&gt; grid % hRatioZLevelK % array
-      hRatioZLevelKm1 =&gt; grid % hRatioZLevelKm1 % array
-
       allocate(tracerTop(num_tracers,nVertLevels+1,nCells))
 
       do iCell=1,nCellsSolve 
          tracerTop(:,1,iCell) = tracers(:,1,iCell) 
          do k=2,maxLevelCell(iCell)
             do iTracer=1,num_tracers
-               ! Note hRatio on the k side is multiplied by tracer at k-1
-               ! and hRatio on the Km1 (k-1) side is mult. by tracer at k.
+               ! Note h on the k side is multiplied by tracer at k-1
+               ! and h on the Km1 (k-1) side is mult. by tracer at k.
                tracerTop(iTracer,k,iCell) = &amp;
-                    hRatioZLevelK(k)  *tracers(iTracer,k-1,iCell) &amp;
-                  + hRatioZLevelKm1(k)*tracers(iTracer,k  ,iCell)
+                  (  h(k  ,iCell)*tracers(iTracer,k-1,iCell) &amp;
+                   + h(k-1,iCell)*tracers(iTracer,k  ,iCell) ) &amp;
+                  / (h(k-1,iCell) + h(k,iCell))   
             end do
          end do
          tracerTop(:,maxLevelCell(iCell)+1,iCell) = tracers(:,maxLevelCell(iCell),iCell)


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv_spline2.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -64,7 +64,7 @@
 !
 !-----------------------------------------------------------------------
 
-   subroutine ocn_tracer_vadv_spline3_tend(grid, wTop, tracers, tend, err)!{{{
+   subroutine ocn_tracer_vadv_spline3_tend(grid, h, wTop, tracers, tend, err)!{{{
 
       !-----------------------------------------------------------------
       !
@@ -73,6 +73,7 @@
       !-----------------------------------------------------------------
 
       real (kind=RKIND), dimension(:,:), intent(in) :: &amp;
+         h, &amp;    !&lt; Input: layer thickness
          wTop    !&lt; Input: vertical tracer in top layer
 
       real (kind=RKIND), dimension(:,:,:), intent(in) :: &amp;
@@ -108,11 +109,8 @@
 
       integer, dimension(:), pointer :: maxLevelCell
 
-      real (kind=RKIND), dimension(:), pointer :: hRatioZLevelK, &amp;
-            hRatioZLevelKm1, zTopZLevel, zMidZLevel
-
       real (kind=RKIND), dimension(:), allocatable :: tracer2ndDer,  &amp;
-            tracersIn, tracersOut, posZMidZLevel, posZTopZLevel
+            tracersIn, tracersOut, depthTop, depthMid
       real (kind=RKIND), dimension(:,:,:), allocatable :: tracerTop
 
       !-----------------------------------------------------------------
@@ -134,26 +132,24 @@
       num_tracers = size(tracers, 1)
       maxLevelCell =&gt; grid % maxLevelCell % array
 
-      hRatioZLevelK =&gt; grid % hRatioZLevelK % array
-      hRatioZLevelKm1 =&gt; grid % hRatioZLevelKm1 % array
-      zMidZLevel =&gt; grid % zMidZLevel % array
-      zTopZLevel =&gt; grid % zTopZLevel % array
-
       allocate(tracerTop(num_tracers,nVertLevels+1,nCells))
 
       ! Compute tracerTop using cubic spline interpolation.
 
       allocate(tracer2ndDer(nVertLevels))
       allocate(tracersIn(nVertLevels),tracersOut(nVertLevels), &amp;
-            posZMidZLevel(nVertLevels), posZTopZLevel(nVertLevels-1))
+            depthMid(nVertLevels), depthTop(nVertLevels+1))
 
-      ! For the ocean, zlevel coordinates are negative and decreasing, 
-      ! but spline functions assume increasing, so flip to positive.
+      do iCell=1,nCellsSolve 
 
-      posZMidZLevel = -zMidZLevel(1:nVertLevels)
-      posZTopZLevel = -zTopZLevel(2:nVertLevels)
+         ! Here depth considers SSH to be depth=0.  We don't need to 
+         ! have true z-coordinate depths because it is just for interpolation.
+         depthTop(1) = 0.0
+         do k=1,maxLevelCell(iCell)
+            depthMid(k  ) = depthTop(k) + 0.5*h(k,iCell)
+            depthTop(k+1) = depthTop(k) +     h(k,iCell)
+         enddo
 
-      do iCell=1,nCellsSolve 
          ! mrp 110201 efficiency note: push tracer loop down
          ! into spline subroutines to improve efficiency
          do iTracer=1,num_tracers
@@ -162,12 +158,12 @@
             ! subroutine call.  
             tracersIn(1:maxLevelCell(iCell))=tracers(iTracer,1:maxLevelCell(iCell),iCell)
 
-            call mpas_cubic_spline_coefficients(posZMidZLevel, &amp;
+            call mpas_cubic_spline_coefficients(depthMid, &amp;
                tracersIn, maxLevelCell(iCell), tracer2ndDer)
 
             call mpas_interpolate_cubic_spline( &amp;
-               posZMidZLevel, tracersIn, tracer2ndDer, maxLevelCell(iCell), &amp;
-               posZTopZLevel, tracersOut, maxLevelCell(iCell)-1 )
+               depthMid, tracersIn, tracer2ndDer, maxLevelCell(iCell), &amp;
+               depthTop(2:maxLevelCell(iCell)), tracersOut, maxLevelCell(iCell)-1 )
 
             tracerTop(itracer,1,iCell) = tracers(iTracer,1,iCell)
             tracerTop(iTracer,2:maxLevelCell(iCell),iCell) = tracersOut(1:maxLevelCell(iCell)-1)
@@ -186,7 +182,7 @@
       end do
 
       deallocate(tracer2ndDer)
-      deallocate(tracersIn,tracersOut, posZMidZLevel, posZTopZLevel)
+      deallocate(tracersIn,tracersOut, depthMid, depthTop)
       deallocate(tracerTop)
    !--------------------------------------------------------------------
 


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv_spline3.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -74,7 +74,7 @@
 !
 !-----------------------------------------------------------------------
 
-   subroutine ocn_tracer_vadv_stencil_tend(grid, wTop, tracers, tend, err)!{{{
+   subroutine ocn_tracer_vadv_stencil_tend(grid, h, wTop, tracers, tend, err)!{{{
 
       !-----------------------------------------------------------------
       !
@@ -83,6 +83,7 @@
       !-----------------------------------------------------------------
 
       real (kind=RKIND), dimension(:,:), intent(in) :: &amp;
+         h, &amp;    !&lt; Input: layer thickness
          wTop    !&lt; Input: vertical tracer in top layer
 
       real (kind=RKIND), dimension(:,:,:), intent(in) :: &amp;
@@ -126,16 +127,16 @@
 
       err = 0
 
-      if(.not.stencilOn) return
+      if(.not. stencilOn) return
 
       call mpas_timer_start(&quot;stencil 2&quot;, .false., stencil2_timer)
       call ocn_tracer_vadv_stencil2_tend(grid, wTop, tracers, tend, err1)
       call mpas_timer_stop(&quot;stencil 2&quot;, stencil2_timer)
       call mpas_timer_start(&quot;stencil 3&quot;, .false., stencil3_timer)
-      call ocn_tracer_vadv_stencil3_tend(grid, wTop, tracers, tend, err2)
+      call ocn_tracer_vadv_stencil3_tend(grid, h, wTop, tracers, tend, err2)
       call mpas_timer_stop(&quot;stencil 3&quot;, stencil3_timer)
       call mpas_timer_start(&quot;stencil 4&quot;, .false., stencil4_timer)
-      call ocn_tracer_vadv_stencil4_tend(grid, wTop, tracers, tend, err3)
+      call ocn_tracer_vadv_stencil4_tend(grid, h, wTop, tracers, tend, err3)
       call mpas_timer_stop(&quot;stencil 4&quot;, stencil4_timer)
 
       err = ior(err1, ior(err2, err3))


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv_stencil.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv_stencil2.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -63,7 +63,7 @@
 !
 !-----------------------------------------------------------------------
 
-   subroutine ocn_tracer_vadv_stencil3_tend(grid, wTop, tracers, tend, err)!{{{
+   subroutine ocn_tracer_vadv_stencil3_tend(grid, h, wTop, tracers, tend, err)!{{{
 
       !-----------------------------------------------------------------
       !
@@ -72,6 +72,7 @@
       !-----------------------------------------------------------------
 
       real (kind=RKIND), dimension(:,:), intent(in) :: &amp;
+         h, &amp;    !&lt; Input: layer thickness
          wTop    !&lt; Input: vertical tracer in top layer
 
       real (kind=RKIND), dimension(:,:,:), intent(in) :: &amp;
@@ -109,7 +110,6 @@
       integer, dimension(:), pointer :: maxLevelCell
 
       real (kind=RKIND) :: cSignWTop, flux3Coef
-      real (kind=RKIND), dimension(:), pointer :: hRatioZLevelK, hRatioZLevelKm1
       real (kind=RKIND), dimension(:,:,:), allocatable :: tracerTop
 
 
@@ -130,8 +130,6 @@
       num_tracers = size(tracers, 1)
       nVertLevels = grid % nVertLevels
       maxLevelCell =&gt; grid % maxLevelCell % array
-      hRatioZLevelK =&gt; grid % hRatioZLevelK % array
-      hRatioZLevelKm1 =&gt; grid % hRatioZLevelKm1 % array
 
       allocate(tracerTop(num_tracers,nVertLevels+1,nCells))
 
@@ -145,9 +143,10 @@
          tracerTop(:,1,iCell) = tracers(:,1,iCell)
          k=2
          do iTracer=1,num_tracers
-           tracerTop(iTracer,k,iCell) = &amp;
-                hRatioZLevelK(k)  *tracers(iTracer,k-1,iCell) &amp;
-              + hRatioZLevelKm1(k)*tracers(iTracer,k  ,iCell)
+            tracerTop(iTracer,k,iCell) = &amp;
+               (  h(k,iCell)*tracers(iTracer,k-1,iCell) &amp;
+                + h(k-1,iCell)*tracers(iTracer,k  ,iCell) ) &amp;
+               / (h(k-1,iCell) + h(k,iCell))   
          end do
          do k=3,maxLevelCell(iCell)-1
             cSignWTop = sign(flux3Coef,wTop(k,iCell))
@@ -162,9 +161,10 @@
          end do
          k=maxLevelCell(iCell)
             do iTracer=1,num_tracers
-              tracerTop(iTracer,k,iCell) = &amp;
-                   hRatioZLevelK(k)  *tracers(iTracer,k-1,iCell) &amp;
-                 + hRatioZLevelKm1(k)*tracers(iTracer,k  ,iCell)
+            tracerTop(iTracer,k,iCell) = &amp;
+               (  h(k,iCell)*tracers(iTracer,k-1,iCell) &amp;
+                + h(k-1,iCell)*tracers(iTracer,k  ,iCell) ) &amp;
+               / (h(k-1,iCell) + h(k,iCell))   
             end do
         tracerTop(:,maxLevelCell(iCell)+1,iCell) = tracers(:,maxLevelCell(iCell),iCell)
       end do


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv_stencil3.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -63,7 +63,7 @@
 !
 !-----------------------------------------------------------------------
 
-   subroutine ocn_tracer_vadv_stencil4_tend(grid, wTop, tracers, tend, err)!{{{
+   subroutine ocn_tracer_vadv_stencil4_tend(grid, h, wTop, tracers, tend, err)!{{{
 
       !-----------------------------------------------------------------
       !
@@ -72,6 +72,7 @@
       !-----------------------------------------------------------------
 
       real (kind=RKIND), dimension(:,:), intent(in) :: &amp;
+         h, &amp;    !&lt; Input: layer thickness
          wTop    !&lt; Input: vertical tracer in top layer
 
       real (kind=RKIND), dimension(:,:,:), intent(in) :: &amp;
@@ -109,7 +110,6 @@
       integer, dimension(:), pointer :: maxLevelCell
 
       real (kind=RKIND) :: cSingWTop, flux3Coef
-      real (kind=RKIND), dimension(:), pointer :: hRatioZLevelK, hRatioZLevelKm1
       real (kind=RKIND), dimension(:,:,:), allocatable :: tracerTop
 
 
@@ -130,8 +130,6 @@
       num_tracers = size(tracers, 1)
       nVertLevels = grid % nVertLevels
       maxLevelCell =&gt; grid % maxLevelCell % array
-      hRatioZLevelK =&gt; grid % hRatioZLevelK % array
-      hRatioZLevelKm1 =&gt; grid % hRatioZLevelKm1 % array
 
       allocate(tracerTop(num_tracers,nVertLevels+1,nCells))
 
@@ -141,9 +139,10 @@
          tracerTop(:,1,iCell) = tracers(:,1,iCell)
          k=2
             do iTracer=1,num_tracers
-              tracerTop(iTracer,k,iCell) = &amp;
-                   hRatioZLevelK(k)  *tracers(iTracer,k-1,iCell) &amp;
-                 + hRatioZLevelKm1(k)*tracers(iTracer,k  ,iCell)
+               tracerTop(iTracer,k,iCell) = &amp;
+                  (  h(k  ,iCell)*tracers(iTracer,k-1,iCell) &amp;
+                   + h(k-1,iCell)*tracers(iTracer,k  ,iCell) ) &amp;
+                  / (h(k-1,iCell) + h(k,iCell))   
             end do
          do k=3,maxLevelCell(iCell)-1
             do iTracer=1,num_tracers
@@ -157,9 +156,10 @@
          end do
          k=maxLevelCell(iCell)
             do iTracer=1,num_tracers
-              tracerTop(iTracer,k,iCell) = &amp;
-                   hRatioZLevelK(k)  *tracers(iTracer,k-1,iCell) &amp;
-                 + hRatioZLevelKm1(k)*tracers(iTracer,k  ,iCell)
+               tracerTop(iTracer,k,iCell) = &amp;
+                  (  h(k  ,iCell)*tracers(iTracer,k-1,iCell) &amp;
+                   + h(k-1,iCell)*tracers(iTracer,k  ,iCell) ) &amp;
+                  / (h(k-1,iCell) + h(k,iCell))   
             end do
         tracerTop(:,maxLevelCell(iCell)+1,iCell) = tracers(:,maxLevelCell(iCell),iCell)
       end do


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_tracer_vadv_stencil4.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_vel_coriolis.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_coriolis.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_coriolis.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_coriolis.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_coriolis.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_coriolis.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_coriolis.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_coriolis.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_coriolis.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_coriolis.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_coriolis.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_coriolis.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_vel_coriolis.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_vel_coriolis.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_coriolis.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_coriolis.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_coriolis.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_coriolis.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_coriolis.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_coriolis.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_coriolis.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_coriolis.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_coriolis.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_vel_forcing.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_forcing.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_forcing.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_forcing.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_forcing.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_forcing.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_forcing.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_forcing.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_forcing.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_forcing.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_forcing.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_forcing.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_vel_forcing.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_vel_forcing.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_forcing.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_forcing.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_forcing.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_forcing.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_forcing.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_forcing.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_forcing.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_forcing.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_forcing.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_forcing_bottomdrag.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_vel_forcing_windstress.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_forcing_windstress.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_vel_hmix.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_hmix.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_hmix.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_hmix.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_hmix.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_hmix.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_hmix.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_hmix.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_hmix.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_hmix.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_hmix.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_hmix.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_vel_hmix.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_vel_hmix.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_hmix.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_hmix.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_hmix.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_hmix.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_hmix.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_hmix.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_hmix.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_hmix.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_hmix.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_vel_hmix_del2.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_hmix_del2.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_hmix_del2.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_hmix_del2.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_hmix_del2.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_hmix_del2.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_hmix_del2.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_hmix_del2.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_vel_hmix_del4.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_hmix_del4.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_hmix_del4.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_hmix_del4.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_hmix_del4.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_hmix_del4.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_hmix_del4.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_hmix_del4.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_vel_pressure_grad.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_vel_pressure_grad.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_vel_pressure_grad.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -17,6 +17,7 @@
 
    use mpas_grid_types
    use mpas_configure
+   use mpas_constants
 
    implicit none
    private
@@ -43,7 +44,7 @@
    !
    !--------------------------------------------------------------------
 
-   real (kind=RKIND) :: rho0Inv
+   real (kind=RKIND) :: rho0Inv, grho0Inv
 
 
 !***********************************************************************
@@ -64,7 +65,7 @@
 !
 !-----------------------------------------------------------------------
 
-   subroutine ocn_vel_pressure_grad_tend(grid, pressure, tend, err)!{{{
+   subroutine ocn_vel_pressure_grad_tend(grid, pressure, zMid, rho, tend, err)!{{{
 
       !-----------------------------------------------------------------
       !
@@ -73,7 +74,9 @@
       !-----------------------------------------------------------------
 
       real (kind=RKIND), dimension(:,:), intent(in) :: &amp;
-         pressure !&lt; Input: Pressure field or Mongomery potential
+         pressure, &amp; !&lt; Input: Pressure field or Mongomery potential
+         zMid, &amp;     !&lt; Input: z-coordinate at mid-depth of layer
+         rho         !&lt; Input: density
 
       type (mesh_type), intent(in) :: &amp;
          grid          !&lt; Input: grid information
@@ -116,20 +119,33 @@
       dcEdge =&gt; grid % dcEdge % array
       edgeMask =&gt; grid % edgeMask % array
 
-!    dwj: 10/25/2011 - Need to explore isopycnal vs zlevel flags
-     do iEdge=1,nEdgesSolve
-       cell1 = cellsOnEdge(1,iEdge)
-       cell2 = cellsOnEdge(2,iEdge)
+      ! pressure for generalized coordinates
+      ! -1/rho_0 (grad p_k + rho g grad z_k^{mid})
 
-       invdcEdge = 1.0 / dcEdge(iEdge)
-       do k=1,maxLevelEdgeTop(iEdge)
+      ! For pure isopycnal coordinates, we are still using 
+      ! grad(M), the gradient of Montgomery Potential, because
+      ! we have set rho0Inv=1 and grho0Inv=0 in the init routine,
+      ! and pressure is passed in as MontPot.
 
-         tend(k,iEdge) = tend(k,iEdge) - edgeMask(k,iEdge) * rho0Inv*(  pressure(k,cell2) - pressure(k,cell1) ) * invdcEdge
-       end do
+      do iEdge=1,nEdgesSolve
+         cell1 = cellsOnEdge(1,iEdge)
+         cell2 = cellsOnEdge(2,iEdge)
+         invdcEdge = 1.0 / dcEdge(iEdge)
 
-     enddo
+         do k=1,maxLevelEdgeTop(iEdge)
+            tend(k,iEdge) = tend(k,iEdge)     &amp;
+              - edgeMask(k,iEdge) * rho0Inv*(  pressure(k,cell2) &amp;
+                         - pressure(k,cell1) )* invdcEdge &amp;
+              - edgeMask(k,iEdge) * grho0Inv*  0.5*(rho(k,cell1)+rho(k,cell2)) &amp;
+                        *(  zMid(k,cell2) &amp;
+                          - zMid(k,cell1) )* invdcEdge
+                      
+         end do
 
+      end do
 
+
+
    !--------------------------------------------------------------------
 
    end subroutine ocn_vel_pressure_grad_tend!}}}
@@ -172,10 +188,14 @@
 
       if (config_vert_grid_type.eq.'isopycnal') then
         rho0Inv = 1.0
-      elseif (config_vert_grid_type.eq.'zlevel') then
+        grho0Inv = 0.0
+      else 
         rho0Inv = 1.0/config_rho0
+        grho0Inv = gravity/config_rho0
       end if
 
+
+
    !--------------------------------------------------------------------
 
    end subroutine ocn_vel_pressure_grad_init!}}}


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_vel_pressure_grad.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_pressure_grad.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_pressure_grad.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_pressure_grad.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_pressure_grad.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_pressure_grad.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_pressure_grad.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_pressure_grad.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_vel_vadv.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_vel_vadv.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_vel_vadv.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -64,7 +64,7 @@
 !
 !-----------------------------------------------------------------------
 
-   subroutine ocn_vel_vadv_tend(grid, u, wTop, tend, err)!{{{
+   subroutine ocn_vel_vadv_tend(grid, u, h_edge, wTop, tend, err)!{{{
 
       !-----------------------------------------------------------------
       !
@@ -75,6 +75,7 @@
       real (kind=RKIND), dimension(:,:), intent(in) :: &amp;
          u     !&lt; Input: Horizontal velocity
       real (kind=RKIND), dimension(:,:), intent(in) :: &amp;
+         h_edge,&amp;!&lt; Input: thickness at edge
          wTop  !&lt; Input: Vertical velocity on top layer
 
       type (mesh_type), intent(in) :: &amp;
@@ -110,7 +111,6 @@
 
       real (kind=RKIND) :: wTopEdge
       real (kind=RKIND), dimension(:), allocatable :: w_dudzTopEdge
-      real (kind=RKIND), dimension(:), pointer :: zMidZLevel
 
       if(.not.velVadvOn) return
 
@@ -120,7 +120,6 @@
       nEdgesSolve = grid % nEdgesSolve
       maxLevelEdgeTop =&gt; grid % maxLevelEdgeTop % array
       cellsOnEdge =&gt; grid % cellsOnEdge % array
-      zMidZLevel =&gt; grid % zMidZLevel % array
       edgeMask =&gt; grid % edgeMask % array
 
       allocate(w_dudzTopEdge(nVertLevels+1))
@@ -135,7 +134,7 @@
 
           ! compute dudz at vertical interface with first order derivative.
           w_dudzTopEdge(k) = wTopEdge * (u(k-1,iEdge)-u(k,iEdge)) &amp;
-                       / (zMidZLevel(k-1) - zMidZLevel(k))
+                       / (0.5*(h_edge(k-1,iEdge) + h_edge(k,iEdge)))
         end do
         w_dudzTopEdge(maxLevelEdgeTop(iEdge)+1) = 0.0
         ! Average w*du/dz from vertical interface to vertical middle of cell
@@ -179,7 +178,7 @@
       err = 0
       velVadvOn = .false.
 
-      if (config_vert_grid_type.eq.'zlevel') then
+      if (config_vert_grid_type.ne.'isopycnal') then
           velVadvOn = .true.
       end if
 


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_vel_vadv.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_vadv.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_vadv.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_vadv.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_vadv.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_vadv.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_vadv.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_vadv.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_vadv.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_vadv.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_vadv.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vel_vadv.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_vel_vadv.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_vel_vadv.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vel_vadv.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vel_vadv.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vel_vadv.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vel_vadv.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vel_vadv.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vel_vadv.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vel_vadv.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vel_vadv.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vel_vadv.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_vmix.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_vmix.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_vmix.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -314,7 +314,6 @@
          ! mrp 110315 efficiency note: for z-level, could precompute
          ! -2.0*dt/(h(k)_h(k+1))/h(k) in setup
          ! h_edge is computed in compute_solve_diag, and is not available yet.
-         ! This could be removed if hZLevel used instead.
          cell1 = cellsOnEdge(1,iEdge)
          cell2 = cellsOnEdge(2,iEdge)
          do k=1,maxLevelEdgeTop(iEdge)


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_vmix.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vmix.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vmix.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vmix.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vmix.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vmix.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vmix.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vmix.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vmix.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vmix.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vmix.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vmix.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_vmix.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_vmix.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vmix.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vmix.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vmix.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vmix.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vmix.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vmix.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vmix.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vmix.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vmix.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_vmix_coefs_const.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vmix_coefs_const.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vmix_coefs_const.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vmix_coefs_const.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vmix_coefs_const.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vmix_coefs_const.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vmix_coefs_const.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vmix_coefs_const.F:924-962


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_vmix_coefs_rich.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vmix_coefs_rich.F:924-962

Modified: trunk/mpas/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F
===================================================================
--- trunk/mpas/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F        2012-01-27 00:06:27 UTC (rev 1428)
+++ trunk/mpas/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F        2012-01-27 00:25:04 UTC (rev 1429)
@@ -186,6 +186,9 @@
       nVertLevels = grid % nVertLevels
       zTopZLevel =&gt; grid % zTopZLevel % array
 
+      ! zTopZLevel is used here for simplicity.  Using zMid and h, which 
+      ! vary in time, would give the exact location of the top, but it
+      ! would only change the diffusion value very slightly.
       do k=1,nVertLevels+1
           vertViscTopOfEdge(k,:) = -(config_max_visc_tanh-config_min_visc_tanh)/2.0 &amp;
             *tanh(-(zTopZLevel(k)-config_ZMid_tanh) &amp;
@@ -255,6 +258,9 @@
       nVertLevels = grid % nVertLevels
       zTopZLevel =&gt; grid % zTopZLevel % array
 
+      ! zTopZLevel is used here for simplicity.  Using zMid and h, which 
+      ! vary in time, would give the exact location of the top, but it
+      ! would only change the diffusion value very slightly.
       do k=1,nVertLevels+1
          vertDiffTopOfCell(k,:) = -(config_max_diff_tanh-config_min_diff_tanh)/2.0 &amp;
             *tanh(-(zTopZLevel(k)-config_ZMid_tanh) &amp;
@@ -308,14 +314,6 @@
           tanhDiffOn = .true.
       endif
 
-      if((tanhViscOn) .or. (tanhDiffOn)) then
-         if (config_vert_grid_type.ne.'zlevel') then
-            write(0,*) 'Abort: config_vert_diff_type.eq.tanh may only', &amp;
-                       ' use config_vert_grid_type of zlevel at this time'
-            err = 1
-         endif
-      endif
-
    !--------------------------------------------------------------------
 
    end subroutine ocn_vmix_coefs_tanh_init!}}}


Property changes on: trunk/mpas/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F
___________________________________________________________________
Modified: svn:mergeinfo
   - /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1260-1270
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:924-962
   + /branches/cam_mpas_nh/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1260-1270
/branches/ocean_projects/ale_vert_coord/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1225-1383
/branches/ocean_projects/ale_vert_coord_new/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1387-1428
/branches/ocean_projects/imp_vert_mix_mrp/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:754-986
/branches/ocean_projects/performance/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1120-1371
/branches/ocean_projects/rayleigh/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1298-1311
/branches/ocean_projects/split_explicit_mrp/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1134-1138
/branches/ocean_projects/split_explicit_timestepping/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1044-1097
/branches/ocean_projects/time_averaging/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1271-1305
/branches/ocean_projects/vert_adv_mrp/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:704-745
/branches/source_renaming/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:1082-1113
/branches/time_manager/src/core_ocean/mpas_ocn_vmix_coefs_tanh.F:924-962

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