<p><b>mpetersen@lanl.gov</b> 2011-11-28 09:43:40 -0700 (Mon, 28 Nov 2011)</p><p>Scripts for automated performance testing. See README file for instructions. Tested on lobo and hopper.<br>
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+MPAS-Ocean
+Automated performance testing scripts
+Mark Petersen and Doug Jacobsen, LANL, Nov 2011
+
+Instructions for test setup:
+
+1. In the domains subdirectory:
+ a. Create subdirectories in domains for each mesh you wish to test.
+ b. Make links for grid.nc and graph.info.parts.*
+ c. Adjust namelist.input for each mesh.
+
+2. In performance_script.sh file, change the following variables:
+ SUBMISSION_CMD="msub"
+ PROCS_PER_NODE="16"
+ PROC_LIST="16 32 64 128 256 512 1024"
+ MESH_LIST="015kmL40 030kmL40 060kmL40 120kmL40"
+ OCEAN_MODEL_EXECUTABLE="/usr/projects/climate/mpeterse/cj/mpas/trunk/mpas/src/ocean_model.exe"
+ MESH_DIR="domains"
+ SCRIPT_TEMPLATE="script_template.sh"
+
+3. Change script_template.sh for your submission software.
+
+To run a performance test:
+
+./performanceTest.sh setup
+ This sets up run directories in runs and creates more scripts.
+
+./performanceTest.sh submit
+ To submit all jobs. Alternatively, one may submit a specific job with
+ runs/run_dir/qsub_submit.sh
+
+./performanceTest.sh postprocess
+ creates results in the file timing_results
+ and column-aligned data in timing_results2
+ and matlab-ready text in timing_results3.txt
+
+./performanceTest.sh clean
+ for cleanup.
+
+To plot results, use matlab script performance.m, and copy lines from timing_results3.txt.
+
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+&sw_model
+ config_test_case = 0
+ config_time_integration = 'split_explicit'
+ config_rk_filter_btr_mode = .false.
+ config_dt = 100.0
+ config_start_time = '0000-01-01_00:00:00'
+ config_run_duration = '00_01:00:00'
+ config_stats_interval = 10
+/
+
+&io
+ config_input_name = 'grid.nc'
+ config_output_name = 'output.nc'
+ config_restart_name = 'restart.nc'
+ config_output_interval = '2_00:00:00'
+ config_frames_per_outfile = 10000
+/
+
+&restart
+ config_do_restart = .false.
+ config_restart_interval = '1_00:00:00'
+/
+
+&grid
+ config_vert_grid_type = 'zlevel'
+ config_rho0 = 1000
+/
+
+&split_explicit_ts
+ config_n_ts_iter = 2
+ config_n_bcl_iter_beg = 1
+ config_n_bcl_iter_mid = 2
+ config_n_bcl_iter_end = 2
+ config_n_btr_subcycles = 20
+ config_n_btr_cor_iter = 2
+ config_u_correction = .true.
+ config_filter_btr_mode = .false.
+ config_btr_subcycle_loop_factor = 2
+ config_SSH_from = 'avg_flux'
+ config_new_btr_variables_from = 'btr_avg'
+ config_btr_gam1_uWt1 = 0.5
+ config_btr_gam2_SSHWt1 = 1.0
+ config_btr_gam3_uWt2 = 1.0
+ config_btr_solve_SSH2 = .false.
+/
+&hmix
+ config_h_mom_eddy_visc2 = 1000.0
+ config_h_mom_eddy_visc4 = 5.0e10
+ config_visc_vorticity_term = .false.
+ config_h_tracer_eddy_diff2 = 1000.0
+ config_h_tracer_eddy_diff4 = 5.0e10
+/
+&vmix
+ config_vert_visc_type = 'rich'
+ config_vert_diff_type = 'rich'
+ config_implicit_vertical_mix = .true.
+ config_convective_visc = 1.0
+ config_convective_diff = 1.0
+/
+&vmix_const
+ config_vert_visc = 2.5e-5
+ config_vert_diff = 2.5e-5
+/
+&vmix_rich
+ config_bkrd_vert_visc = 1.0e-4
+ config_bkrd_vert_diff = 1.0e-5
+ config_rich_mix = 50.0
+/
+&vmix_tanh
+ config_max_visc_tanh = 2.5e-1
+ config_min_visc_tanh = 1.0e-4
+ config_max_diff_tanh = 2.5e-2
+ config_min_diff_tanh = 1.0e-5
+ config_zMid_tanh = -100
+ config_zWidth_tanh = 100
+/
+&eos
+ config_eos_type = 'jm'
+/
+&advection
+ config_vert_tracer_adv = 'stencil'
+ config_vert_tracer_adv_order =2
+ config_tracer_adv_order = 2
+ config_thickness_adv_order = 2
+ config_positive_definite = .false.
+ config_monotonic = .false.
+/
+&restore
+config_restoreTS = .true.
+config_restoreT_timescale = 30.0
+config_restoreS_timescale = 30.0
+/
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+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.12288
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.128
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.128 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.128 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.128
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.1536
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.1536 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.1536 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.1536
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.16
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.16 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.16 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.16
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.192
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.192 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.192 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.192
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.2
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.2 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.2 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.2
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.24
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.24 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.24 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.24
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.240
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.240 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.240 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.240
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.256
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.256 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.256 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.256
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.3072
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.3072 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.3072 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.3072
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.32
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.32 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.32 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.32
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.384
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.384 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.384 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.384
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.4
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.4 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.4 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.4
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.48
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.48 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.48 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.48
\ No newline at end of file
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+ *
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===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.480 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.480 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.480
\ No newline at end of file
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+ *
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===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.512 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.512 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.512
\ No newline at end of file
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===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.6144 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.6144 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.6144
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.64
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.64 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.64 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.64
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.768
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.768 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.768 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.768
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.8
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.8 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.8 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.8
\ No newline at end of file
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Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.96
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.96 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/graph.info.part.96 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/graph.info.part.96
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/grid.nc
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/grid.nc (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/grid.nc 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/30kmL40/ocean30km.nc
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/030kmL40/namelist.input
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/030kmL40/namelist.input (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/030kmL40/namelist.input 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1,92 @@
+&sw_model
+ config_test_case = 0
+ config_time_integration = 'split_explicit'
+ config_rk_filter_btr_mode = .false.
+ config_dt = 1000.0
+ config_start_time = '0000-01-01_00:00:00'
+ config_run_duration = '0_06:00:00'
+ config_stats_interval = 10
+/
+
+&io
+ config_input_name = 'grid.nc'
+ config_output_name = 'output.nc'
+ config_restart_name = 'restart.nc'
+ config_output_interval = '10_00:00:00'
+ config_frames_per_outfile = 10000
+/
+
+&restart
+ config_do_restart = .false.
+ config_restart_interval = '10_00:00:00'
+/
+
+&grid
+ config_vert_grid_type = 'zlevel'
+ config_rho0 = 1000
+/
+
+&split_explicit_ts
+ config_n_ts_iter = 2
+ config_n_bcl_iter_beg = 1
+ config_n_bcl_iter_mid = 2
+ config_n_bcl_iter_end = 2
+ config_n_btr_subcycles =20
+ config_n_btr_cor_iter = 2
+ config_u_correction = .true.
+ config_filter_btr_mode = .false.
+ config_btr_subcycle_loop_factor = 2
+ config_SSH_from = 'avg_flux'
+ config_new_btr_variables_from = 'btr_avg'
+ config_btr_gam1_uWt1 = 0.5
+ config_btr_gam2_SSHWt1 = 1.0
+ config_btr_gam3_uWt2 = 1.0
+ config_btr_solve_SSH2 = .false.
+/
+&hmix
+ config_h_mom_eddy_visc2 = 500.0
+ config_h_mom_eddy_visc4 = 1.0e13
+ config_visc_vorticity_term = .false.
+ config_h_tracer_eddy_diff2 = 50.0
+ config_h_tracer_eddy_diff4 = 1.0e13
+/
+&vmix
+ config_vert_visc_type = 'rich'
+ config_vert_diff_type = 'rich'
+ config_implicit_vertical_mix = .true.
+ config_convective_visc = 1.0
+ config_convective_diff = 1.0
+/
+&vmix_const
+ config_vert_visc = 2.5e-5
+ config_vert_diff = 2.5e-5
+/
+&vmix_rich
+ config_bkrd_vert_visc = 1.0e-4
+ config_bkrd_vert_diff = 1.0e-5
+ config_rich_mix = 50.0
+/
+&vmix_tanh
+ config_max_visc_tanh = 2.5e-1
+ config_min_visc_tanh = 1.0e-4
+ config_max_diff_tanh = 2.5e-2
+ config_min_diff_tanh = 1.0e-5
+ config_zMid_tanh = -100
+ config_zWidth_tanh = 100
+/
+&eos
+ config_eos_type = 'jm'
+/
+&advection
+ config_vert_tracer_adv = 'stencil'
+ config_vert_tracer_adv_order = 2
+ config_tracer_adv_order = 2
+ config_thickness_adv_order = 2
+ config_positive_definite = .false.
+ config_monotonic = .false.
+/
+&restore
+config_restoreTS = .true.
+config_restoreT_timescale = 30.0
+config_restoreS_timescale = 30.0
+/
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.1024
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.1024 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.1024 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.1024
\ No newline at end of file
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+ *
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===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.128 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.128 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.128
\ No newline at end of file
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+ *
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===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.1536 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.1536 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.1536
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.16
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.16 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.16 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.16
\ No newline at end of file
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Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.192
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.192 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.192 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.192
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.2
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.2 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.2 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.2
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.24
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.24 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.24 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.24
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.240
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.240 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.240 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.240
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.256
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.256 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.256 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.256
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.3072
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.3072 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.3072 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.3072
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.32
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.32 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.32 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.32
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.384
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.384 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.384 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.384
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.4
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.4 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.4 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.4
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.48
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.48 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.48 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.48
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.480
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.480 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.480 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.480
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.512
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.512 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.512 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.512
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.64
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.64 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.64 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.64
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.768
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.768 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.768 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.768
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.8
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.8 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.8 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.8
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.96
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.96 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/graph.info.part.96 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/graph.info.part.96
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/grid.nc
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/grid.nc (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/grid.nc 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/60kmL40/ocean60km.nc
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/060kmL40/namelist.input
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/060kmL40/namelist.input (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/060kmL40/namelist.input 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1,92 @@
+&sw_model
+ config_test_case = 0
+ config_time_integration = 'split_explicit'
+ config_rk_filter_btr_mode = .false.
+ config_dt = 1800.0
+ config_start_time = '0000-01-01_00:00:00'
+ config_run_duration = '1_00:00:00'
+ config_stats_interval = 10
+/
+
+&io
+ config_input_name = 'grid.nc'
+ config_output_name = 'output.nc'
+ config_restart_name = 'restart.nc'
+ config_output_interval = '10_00:00:00'
+ config_frames_per_outfile = 10000
+/
+
+&restart
+ config_do_restart = .false.
+ config_restart_interval = '30_00:00:00'
+/
+
+&grid
+ config_vert_grid_type = 'zlevel'
+ config_rho0 = 1000
+/
+
+&split_explicit_ts
+ config_n_ts_iter = 2
+ config_n_bcl_iter_beg = 1
+ config_n_bcl_iter_mid = 2
+ config_n_bcl_iter_end = 2
+ config_n_btr_subcycles = 15
+ config_n_btr_cor_iter = 2
+ config_u_correction = .true.
+ config_filter_btr_mode = .false.
+ config_btr_subcycle_loop_factor = 2
+ config_SSH_from = 'avg_flux'
+ config_new_btr_variables_from = 'btr_avg'
+ config_btr_gam1_uWt1 = 0.5
+ config_btr_gam2_SSHWt1 = 1.0
+ config_btr_gam3_uWt2 = 1.0
+ config_btr_solve_SSH2 = .false.
+/
+&hmix
+ config_h_mom_eddy_visc2 = 500.0
+ config_h_mom_eddy_visc4 = 1.0e14
+ config_visc_vorticity_term = .false.
+ config_h_tracer_eddy_diff2 = 50.0
+ config_h_tracer_eddy_diff4 = 1.0e14
+/
+&vmix
+ config_vert_visc_type = 'rich'
+ config_vert_diff_type = 'rich'
+ config_implicit_vertical_mix = .true.
+ config_convective_visc = 1.0
+ config_convective_diff = 1.0
+/
+&vmix_const
+ config_vert_visc = 2.5e-5
+ config_vert_diff = 2.5e-5
+/
+&vmix_rich
+ config_bkrd_vert_visc = 1.0e-4
+ config_bkrd_vert_diff = 1.0e-5
+ config_rich_mix = 50.0
+/
+&vmix_tanh
+ config_max_visc_tanh = 2.5e-1
+ config_min_visc_tanh = 1.0e-4
+ config_max_diff_tanh = 2.5e-2
+ config_min_diff_tanh = 1.0e-5
+ config_zMid_tanh = -100
+ config_zWidth_tanh = 100
+/
+&eos
+ config_eos_type = 'jm'
+/
+&advection
+ config_vert_tracer_adv = 'stencil'
+ config_vert_tracer_adv_order = 2
+ config_tracer_adv_order = 2
+ config_thickness_adv_order = 2
+ config_positive_definite = .false.
+ config_monotonic = .false.
+/
+&restore
+config_restoreTS = .true.
+config_restoreT_timescale = 30.0
+config_restoreS_timescale = 30.0
+/
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.1024
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.1024 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.1024 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.1024
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.128
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.128 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.128 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.128
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.16
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.16 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.16 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.16
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.192
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.192 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.192 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.192
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.2
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.2 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.2 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.2
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.24
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.24 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.24 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.24
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.240
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.240 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.240 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.240
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.256
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.256 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.256 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.256
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.32
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.32 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.32 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.32
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.384
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.384 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.384 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.384
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.4
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.4 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.4 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.4
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.48
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.48 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.48 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.48
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.480
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.480 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.480 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.480
\ No newline at end of file
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Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.512
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.512 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.512 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.512
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.64
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.64 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.64 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.64
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.768
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.768 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.768 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.768
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.8
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.8 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.8 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.8
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.96
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.96 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/graph.info.part.96 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/graph.info.part.96
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/grid.nc
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/grid.nc (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/grid.nc 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /global/u2/m/mpeterse/COMMON_MPAS/ocean/grids/real_bathymetry_uniform/120kmL40/ocean120km.nc
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_hopper/120kmL40/namelist.input
===================================================================
--- branches/ocean_projects/performance_testing/domains_hopper/120kmL40/namelist.input (rev 0)
+++ branches/ocean_projects/performance_testing/domains_hopper/120kmL40/namelist.input 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1,92 @@
+&sw_model
+ config_test_case = 0
+ config_time_integration = 'split_explicit'
+ config_rk_filter_btr_mode = .false.
+ config_dt = 3000.0
+ config_start_time = '0000-01-01_00:00:00'
+ config_run_duration = '4_00:00:01'
+ config_stats_interval = 10
+/
+
+&io
+ config_input_name = 'grid.nc'
+ config_output_name = 'output.nc'
+ config_restart_name = 'restart.nc'
+ config_output_interval = '10_00:00:00'
+ config_frames_per_outfile = 10000
+/
+
+&restart
+ config_do_restart = .false.
+ config_restart_interval = '90_00:00:00'
+/
+
+&grid
+ config_vert_grid_type = 'zlevel'
+ config_rho0 = 1000
+/
+
+&split_explicit_ts
+ config_n_ts_iter = 2
+ config_n_bcl_iter_beg = 1
+ config_n_bcl_iter_mid = 2
+ config_n_bcl_iter_end = 2
+ config_n_btr_subcycles = 15
+ config_n_btr_cor_iter = 2
+ config_u_correction = .true.
+ config_filter_btr_mode = .false.
+ config_btr_subcycle_loop_factor = 2
+ config_SSH_from = 'avg_flux'
+ config_new_btr_variables_from = 'btr_avg'
+ config_btr_gam1_uWt1 = 0.5
+ config_btr_gam2_SSHWt1 = 1.0
+ config_btr_gam3_uWt2 = 1.0
+ config_btr_solve_SSH2 = .false.
+/
+&hmix
+ config_h_mom_eddy_visc2 = 500.0
+ config_h_mom_eddy_visc4 = 1.0e15
+ config_visc_vorticity_term = .false.
+ config_h_tracer_eddy_diff2 = 0.0
+ config_h_tracer_eddy_diff4 = 1.0e15
+/
+&vmix
+ config_vert_visc_type = 'rich'
+ config_vert_diff_type = 'rich'
+ config_implicit_vertical_mix = .true.
+ config_convective_visc = 1.0
+ config_convective_diff = 1.0
+/
+&vmix_const
+ config_vert_visc = 2.5e-5
+ config_vert_diff = 2.5e-5
+/
+&vmix_rich
+ config_bkrd_vert_visc = 1.0e-4
+ config_bkrd_vert_diff = 1.0e-5
+ config_rich_mix = 50.0
+/
+&vmix_tanh
+ config_max_visc_tanh = 2.5e-1
+ config_min_visc_tanh = 1.0e-4
+ config_max_diff_tanh = 2.5e-2
+ config_min_diff_tanh = 1.0e-5
+ config_zMid_tanh = -100
+ config_zWidth_tanh = 100
+/
+&eos
+ config_eos_type = 'jm'
+/
+&advection
+ config_vert_tracer_adv = 'stencil'
+ config_vert_tracer_adv_order = 2
+ config_tracer_adv_order = 2
+ config_thickness_adv_order = 2
+ config_positive_definite = .false.
+ config_monotonic = .false.
+/
+&restore
+config_restoreTS = .true.
+config_restoreT_timescale = 30.0
+config_restoreS_timescale = 30.0
+/
Added: branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.1024
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.1024 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.1024 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.1024
\ No newline at end of file
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===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.128 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.128 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.128
\ No newline at end of file
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===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.16 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.16 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.16
\ No newline at end of file
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===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.2 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.2 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.2
\ No newline at end of file
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Added: branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.24
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.24 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.24 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.24
\ No newline at end of file
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Added: branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.240
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.240 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.240 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.240
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.256
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.256 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.256 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.256
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.32
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.32 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.32 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.32
\ No newline at end of file
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+ *
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===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.4 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.4 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.4
\ No newline at end of file
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Added: branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.48
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.48 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.48 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.48
\ No newline at end of file
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--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.480 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.480 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.480
\ No newline at end of file
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===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.512 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.512 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.512
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.64
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.64 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.64 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.64
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.8
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.8 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.8 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.8
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.96
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.96 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/graph.info.part.96 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/graph.info.part.96
\ No newline at end of file
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Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/015kmL40/grid.nc
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/grid.nc (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/grid.nc 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/15kmL40/ocean15km.nc
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/015kmL40/grid.nc
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/015kmL40/namelist.input
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/015kmL40/namelist.input (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/015kmL40/namelist.input 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1,92 @@
+&sw_model
+ config_test_case = 0
+ config_time_integration = 'split_explicit'
+ config_rk_filter_btr_mode = .false.
+ config_dt = 100.0
+ config_start_time = '0000-01-01_00:00:00'
+ config_run_duration = '00_01:00:00'
+ config_stats_interval = 10
+/
+
+&io
+ config_input_name = 'grid.nc'
+ config_output_name = 'output.nc'
+ config_restart_name = 'restart.nc'
+ config_output_interval = '2_00:00:00'
+ config_frames_per_outfile = 10000
+/
+
+&restart
+ config_do_restart = .false.
+ config_restart_interval = '1_00:00:00'
+/
+
+&grid
+ config_vert_grid_type = 'zlevel'
+ config_rho0 = 1000
+/
+
+&split_explicit_ts
+ config_n_ts_iter = 2
+ config_n_bcl_iter_beg = 1
+ config_n_bcl_iter_mid = 2
+ config_n_bcl_iter_end = 2
+ config_n_btr_subcycles = 20
+ config_n_btr_cor_iter = 2
+ config_u_correction = .true.
+ config_filter_btr_mode = .false.
+ config_btr_subcycle_loop_factor = 2
+ config_SSH_from = 'avg_flux'
+ config_new_btr_variables_from = 'btr_avg'
+ config_btr_gam1_uWt1 = 0.5
+ config_btr_gam2_SSHWt1 = 1.0
+ config_btr_gam3_uWt2 = 1.0
+ config_btr_solve_SSH2 = .false.
+/
+&hmix
+ config_h_mom_eddy_visc2 = 1000.0
+ config_h_mom_eddy_visc4 = 5.0e10
+ config_visc_vorticity_term = .false.
+ config_h_tracer_eddy_diff2 = 1000.0
+ config_h_tracer_eddy_diff4 = 5.0e10
+/
+&vmix
+ config_vert_visc_type = 'rich'
+ config_vert_diff_type = 'rich'
+ config_implicit_vertical_mix = .true.
+ config_convective_visc = 1.0
+ config_convective_diff = 1.0
+/
+&vmix_const
+ config_vert_visc = 2.5e-5
+ config_vert_diff = 2.5e-5
+/
+&vmix_rich
+ config_bkrd_vert_visc = 1.0e-4
+ config_bkrd_vert_diff = 1.0e-5
+ config_rich_mix = 50.0
+/
+&vmix_tanh
+ config_max_visc_tanh = 2.5e-1
+ config_min_visc_tanh = 1.0e-4
+ config_max_diff_tanh = 2.5e-2
+ config_min_diff_tanh = 1.0e-5
+ config_zMid_tanh = -100
+ config_zWidth_tanh = 100
+/
+&eos
+ config_eos_type = 'jm'
+/
+&advection
+ config_vert_tracer_adv = 'stencil'
+ config_vert_tracer_adv_order =2
+ config_tracer_adv_order = 2
+ config_thickness_adv_order = 2
+ config_positive_definite = .false.
+ config_monotonic = .false.
+/
+&restore
+config_restoreTS = .true.
+config_restoreT_timescale = 30.0
+config_restoreS_timescale = 30.0
+/
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info
\ No newline at end of file
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___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.1024
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.1024 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.1024 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info.part.1024
\ No newline at end of file
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Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.128
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--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.128 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.128 2011-11-28 16:43:40 UTC (rev 1215)
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\ No newline at end of file
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Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.16
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.16 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.16 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info.part.16
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.16
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.2
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.2 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.2 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info.part.2
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.24
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.24 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.24 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info.part.24
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.240
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.240 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.240 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info.part.240
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.256
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.256 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.256 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info.part.256
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.32
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.32 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.32 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info.part.32
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.4
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.4 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.4 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info.part.4
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.48
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.48 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.48 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info.part.48
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.480
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.480 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.480 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info.part.480
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.512
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.512 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.512 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info.part.512
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.64
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.64 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.64 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info.part.64
\ No newline at end of file
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___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.8
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.8 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.8 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info.part.8
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.96
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.96 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/graph.info.part.96 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/graph.info.part.96
\ No newline at end of file
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___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/grid.nc
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/grid.nc (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/grid.nc 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/30kmL40/ocean30km.nc
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/grid.nc
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/030kmL40/namelist.input
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/030kmL40/namelist.input (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/030kmL40/namelist.input 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1,92 @@
+&sw_model
+ config_test_case = 0
+ config_time_integration = 'split_explicit'
+ config_rk_filter_btr_mode = .false.
+ config_dt = 1000.0
+ config_start_time = '0000-01-01_00:00:00'
+ config_run_duration = '0_06:00:00'
+ config_stats_interval = 10
+/
+
+&io
+ config_input_name = 'grid.nc'
+ config_output_name = 'output.nc'
+ config_restart_name = 'restart.nc'
+ config_output_interval = '10_00:00:00'
+ config_frames_per_outfile = 10000
+/
+
+&restart
+ config_do_restart = .false.
+ config_restart_interval = '10_00:00:00'
+/
+
+&grid
+ config_vert_grid_type = 'zlevel'
+ config_rho0 = 1000
+/
+
+&split_explicit_ts
+ config_n_ts_iter = 2
+ config_n_bcl_iter_beg = 1
+ config_n_bcl_iter_mid = 2
+ config_n_bcl_iter_end = 2
+ config_n_btr_subcycles =20
+ config_n_btr_cor_iter = 2
+ config_u_correction = .true.
+ config_filter_btr_mode = .false.
+ config_btr_subcycle_loop_factor = 2
+ config_SSH_from = 'avg_flux'
+ config_new_btr_variables_from = 'btr_avg'
+ config_btr_gam1_uWt1 = 0.5
+ config_btr_gam2_SSHWt1 = 1.0
+ config_btr_gam3_uWt2 = 1.0
+ config_btr_solve_SSH2 = .false.
+/
+&hmix
+ config_h_mom_eddy_visc2 = 500.0
+ config_h_mom_eddy_visc4 = 1.0e13
+ config_visc_vorticity_term = .false.
+ config_h_tracer_eddy_diff2 = 50.0
+ config_h_tracer_eddy_diff4 = 1.0e13
+/
+&vmix
+ config_vert_visc_type = 'rich'
+ config_vert_diff_type = 'rich'
+ config_implicit_vertical_mix = .true.
+ config_convective_visc = 1.0
+ config_convective_diff = 1.0
+/
+&vmix_const
+ config_vert_visc = 2.5e-5
+ config_vert_diff = 2.5e-5
+/
+&vmix_rich
+ config_bkrd_vert_visc = 1.0e-4
+ config_bkrd_vert_diff = 1.0e-5
+ config_rich_mix = 50.0
+/
+&vmix_tanh
+ config_max_visc_tanh = 2.5e-1
+ config_min_visc_tanh = 1.0e-4
+ config_max_diff_tanh = 2.5e-2
+ config_min_diff_tanh = 1.0e-5
+ config_zMid_tanh = -100
+ config_zWidth_tanh = 100
+/
+&eos
+ config_eos_type = 'jm'
+/
+&advection
+ config_vert_tracer_adv = 'stencil'
+ config_vert_tracer_adv_order = 2
+ config_tracer_adv_order = 2
+ config_thickness_adv_order = 2
+ config_positive_definite = .false.
+ config_monotonic = .false.
+/
+&restore
+config_restoreTS = .true.
+config_restoreT_timescale = 30.0
+config_restoreS_timescale = 30.0
+/
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info
\ No newline at end of file
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___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.1024
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.1024 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.1024 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.1024
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.128
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.128 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.128 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.128
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.16
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.16 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.16 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.16
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.2
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.2 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.2 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.2
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.24
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.24 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.24 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.24
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.240
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.240 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.240 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.240
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.256
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.256 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.256 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.256
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.32
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.32 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.32 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.32
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.4
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.4 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.4 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.4
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.48
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.48 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.48 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.48
\ No newline at end of file
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.480
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.480 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.480 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.480
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.512
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.512 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.512 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.512
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.64
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.64 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.64 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.64
\ No newline at end of file
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___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.8
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.8 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.8 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.8
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.8
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.96
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.96 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/graph.info.part.96 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/graph.info.part.96
\ No newline at end of file
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___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/grid.nc
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/grid.nc (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/grid.nc 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/60kmL40/ocean60km.nc
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/grid.nc
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/060kmL40/namelist.input
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/060kmL40/namelist.input (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/060kmL40/namelist.input 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1,92 @@
+&sw_model
+ config_test_case = 0
+ config_time_integration = 'split_explicit'
+ config_rk_filter_btr_mode = .false.
+ config_dt = 1800.0
+ config_start_time = '0000-01-01_00:00:00'
+ config_run_duration = '1_00:00:00'
+ config_stats_interval = 10
+/
+
+&io
+ config_input_name = 'grid.nc'
+ config_output_name = 'output.nc'
+ config_restart_name = 'restart.nc'
+ config_output_interval = '10_00:00:00'
+ config_frames_per_outfile = 10000
+/
+
+&restart
+ config_do_restart = .false.
+ config_restart_interval = '30_00:00:00'
+/
+
+&grid
+ config_vert_grid_type = 'zlevel'
+ config_rho0 = 1000
+/
+
+&split_explicit_ts
+ config_n_ts_iter = 2
+ config_n_bcl_iter_beg = 1
+ config_n_bcl_iter_mid = 2
+ config_n_bcl_iter_end = 2
+ config_n_btr_subcycles = 15
+ config_n_btr_cor_iter = 2
+ config_u_correction = .true.
+ config_filter_btr_mode = .false.
+ config_btr_subcycle_loop_factor = 2
+ config_SSH_from = 'avg_flux'
+ config_new_btr_variables_from = 'btr_avg'
+ config_btr_gam1_uWt1 = 0.5
+ config_btr_gam2_SSHWt1 = 1.0
+ config_btr_gam3_uWt2 = 1.0
+ config_btr_solve_SSH2 = .false.
+/
+&hmix
+ config_h_mom_eddy_visc2 = 500.0
+ config_h_mom_eddy_visc4 = 1.0e14
+ config_visc_vorticity_term = .false.
+ config_h_tracer_eddy_diff2 = 50.0
+ config_h_tracer_eddy_diff4 = 1.0e14
+/
+&vmix
+ config_vert_visc_type = 'rich'
+ config_vert_diff_type = 'rich'
+ config_implicit_vertical_mix = .true.
+ config_convective_visc = 1.0
+ config_convective_diff = 1.0
+/
+&vmix_const
+ config_vert_visc = 2.5e-5
+ config_vert_diff = 2.5e-5
+/
+&vmix_rich
+ config_bkrd_vert_visc = 1.0e-4
+ config_bkrd_vert_diff = 1.0e-5
+ config_rich_mix = 50.0
+/
+&vmix_tanh
+ config_max_visc_tanh = 2.5e-1
+ config_min_visc_tanh = 1.0e-4
+ config_max_diff_tanh = 2.5e-2
+ config_min_diff_tanh = 1.0e-5
+ config_zMid_tanh = -100
+ config_zWidth_tanh = 100
+/
+&eos
+ config_eos_type = 'jm'
+/
+&advection
+ config_vert_tracer_adv = 'stencil'
+ config_vert_tracer_adv_order = 2
+ config_tracer_adv_order = 2
+ config_thickness_adv_order = 2
+ config_positive_definite = .false.
+ config_monotonic = .false.
+/
+&restore
+config_restoreTS = .true.
+config_restoreT_timescale = 30.0
+config_restoreS_timescale = 30.0
+/
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.1024
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.1024 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.1024 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.1024
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.1024
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.128
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.128 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.128 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.128
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.128
___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.16
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.16 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.16 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.16
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.16
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.2
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.2 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.2 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.2
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.2
___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.24
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.24 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.24 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.24
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.24
___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.240
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.240 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.240 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.240
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.240
___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.256
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.256 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.256 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.256
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.256
___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.32
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.32 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.32 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.32
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.32
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.4
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.4 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.4 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.4
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.4
___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.48
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.48 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.48 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.48
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.48
___________________________________________________________________
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+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.480
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.480 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.480 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.480
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.480
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.512
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.512 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.512 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.512
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.512
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.64
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.64 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.64 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.64
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.64
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.8
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.8 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.8 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.8
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.8
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.96
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.96 (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.96 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/graph.info.part.96
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/graph.info.part.96
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/grid.nc
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/grid.nc (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/grid.nc 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1 @@
+link /scratch2/mpeterse/runs/ic/120kmL40/ocean120km.nc
\ No newline at end of file
Property changes on: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/grid.nc
___________________________________________________________________
Added: svn:special
+ *
Added: branches/ocean_projects/performance_testing/domains_lobo/120kmL40/namelist.input
===================================================================
--- branches/ocean_projects/performance_testing/domains_lobo/120kmL40/namelist.input (rev 0)
+++ branches/ocean_projects/performance_testing/domains_lobo/120kmL40/namelist.input 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1,92 @@
+&sw_model
+ config_test_case = 0
+ config_time_integration = 'split_explicit'
+ config_rk_filter_btr_mode = .false.
+ config_dt = 3000.0
+ config_start_time = '0000-01-01_00:00:00'
+ config_run_duration = '4_00:00:01'
+ config_stats_interval = 10
+/
+
+&io
+ config_input_name = 'grid.nc'
+ config_output_name = 'output.nc'
+ config_restart_name = 'restart.nc'
+ config_output_interval = '10_00:00:00'
+ config_frames_per_outfile = 10000
+/
+
+&restart
+ config_do_restart = .false.
+ config_restart_interval = '90_00:00:00'
+/
+
+&grid
+ config_vert_grid_type = 'zlevel'
+ config_rho0 = 1000
+/
+
+&split_explicit_ts
+ config_n_ts_iter = 2
+ config_n_bcl_iter_beg = 1
+ config_n_bcl_iter_mid = 2
+ config_n_bcl_iter_end = 2
+ config_n_btr_subcycles = 15
+ config_n_btr_cor_iter = 2
+ config_u_correction = .true.
+ config_filter_btr_mode = .false.
+ config_btr_subcycle_loop_factor = 2
+ config_SSH_from = 'avg_flux'
+ config_new_btr_variables_from = 'btr_avg'
+ config_btr_gam1_uWt1 = 0.5
+ config_btr_gam2_SSHWt1 = 1.0
+ config_btr_gam3_uWt2 = 1.0
+ config_btr_solve_SSH2 = .false.
+/
+&hmix
+ config_h_mom_eddy_visc2 = 500.0
+ config_h_mom_eddy_visc4 = 1.0e15
+ config_visc_vorticity_term = .false.
+ config_h_tracer_eddy_diff2 = 0.0
+ config_h_tracer_eddy_diff4 = 1.0e15
+/
+&vmix
+ config_vert_visc_type = 'rich'
+ config_vert_diff_type = 'rich'
+ config_implicit_vertical_mix = .true.
+ config_convective_visc = 1.0
+ config_convective_diff = 1.0
+/
+&vmix_const
+ config_vert_visc = 2.5e-5
+ config_vert_diff = 2.5e-5
+/
+&vmix_rich
+ config_bkrd_vert_visc = 1.0e-4
+ config_bkrd_vert_diff = 1.0e-5
+ config_rich_mix = 50.0
+/
+&vmix_tanh
+ config_max_visc_tanh = 2.5e-1
+ config_min_visc_tanh = 1.0e-4
+ config_max_diff_tanh = 2.5e-2
+ config_min_diff_tanh = 1.0e-5
+ config_zMid_tanh = -100
+ config_zWidth_tanh = 100
+/
+&eos
+ config_eos_type = 'jm'
+/
+&advection
+ config_vert_tracer_adv = 'stencil'
+ config_vert_tracer_adv_order = 2
+ config_tracer_adv_order = 2
+ config_thickness_adv_order = 2
+ config_positive_definite = .false.
+ config_monotonic = .false.
+/
+&restore
+config_restoreTS = .true.
+config_restoreT_timescale = 30.0
+config_restoreS_timescale = 30.0
+/
Added: branches/ocean_projects/performance_testing/performanceTest.sh
===================================================================
--- branches/ocean_projects/performance_testing/performanceTest.sh (rev 0)
+++ branches/ocean_projects/performance_testing/performanceTest.sh 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1,130 @@
+#!/bin/bash
+
+SUBMISSION_CMD="qsub"
+PROCS_PER_NODE="16"
+#PROC_LIST="16 32 64 128 256 512 1024"
+#PROC_LIST="24 48 96 192 384 768 1536 3072 6144 12288"
+PROC_LIST="24 48 96 192 384 768 1536 3072"
+MESH_LIST="015kmL40 030kmL40 060kmL40 120kmL40"
+# MESH_LIST="060kmL40 120kmL40"
+
+OCEAN_MODEL_EXECUTABLE="/global/u2/m/mpeterse/ho/pgi/trunk/mpas/src/ocean_model.exe"
+MESH_DIR="domains"
+SCRIPT_TEMPLATE="script_template"
+
+CUR_DIR=`pwd`
+
+if [ $1 == 'setup' ]
+then
+ mkdir -p runs
+
+ for MESH in $MESH_LIST
+ do
+ for PROC in $PROC_LIST
+ do
+ RUN_DIR=runs/${MESH}_${PROC}procs
+ mkdir -p $RUN_DIR
+ cp -d $MESH_DIR/$MESH/*.nc $RUN_DIR/.
+ cp -d $MESH_DIR/$MESH/graph.* $RUN_DIR/.
+ cp -d $MESH_DIR/$MESH/namelist* $RUN_DIR/.
+
+ NODES=`expr $PROC / $PROCS_PER_NODE`
+
+ WORK_DIR=${CUR_DIR}/${RUN_DIR}
+
+ sed -e "s/run_name/${MESH}-${PROC}/g" \
+ -e "s/num_procs/$PROC/g" \
+ -e "s/num_nodes/$NODES/g" \
+ -e "s/procs_per_node/$PROCS_PER_NODE/g" \
+ -e "s|working_dir|${WORK_DIR}|" \
+ -e "s|ocean_model_executable|$OCEAN_MODEL_EXECUTABLE|" \
+ script_template.sh > ${RUN_DIR}/${SUBMISSION_CMD}_submit.sh
+
+ chmod +x ${RUN_DIR}/${SUBMISSION_CMD}_submit.sh
+ done
+ done
+elif [ $1 == 'submit' ]
+then
+ rm -f job_ids
+ rm -f cancel_jobs.sh
+ rm -f start_times.sh
+
+ for MESH in $MESH_LIST
+ do
+ for PROC in $PROC_LIST
+ do
+ RUN_DIR=runs/${MESH}_${PROC}procs
+ cd ${RUN_DIR}
+ ${SUBMISSION_CMD} ${SUBMISSION_CMD}_submit.sh >> ../../job_ids_tmp
+ cd ../..
+
+ echo "showstart " >> start_times_front
+ echo -n " | head -n 3 | tail -n 1 | awk '{print " >> start_times_back
+ echo -n '$6' >> start_times_back
+ echo "}'" >> start_times_back
+ echo "canceljob " >> cancel_jobs_front
+ done
+ done
+
+ grep "[0-9]" job_ids_tmp > job_ids
+
+ paste start_times_front job_ids start_times_back > start_times.sh
+ paste cancel_jobs_front job_ids > cancel_jobs.sh
+
+
+ rm -f job_ids_tmp
+ rm -f start_times_front
+ rm -f start_times_back
+ rm -f cancel_jobs_front
+
+ chmod +x cancel_jobs.sh
+ chmod +x start_times.sh
+elif [ $1 == 'postprocess' ]
+then
+ rm -f timing_results.txt timing_results2.txt
+
+ echo "procs = [ " $PROC_LIST "]'; "> timing_results3.txt
+ echo "WCtime = [ ..." >> timing_results3.txt
+
+ for MESH in $MESH_LIST
+ do
+ echo " " > time_tmp
+
+ for PROC in $PROC_LIST
+ do
+ RUN_DIR=runs/${MESH}_${PROC}procs
+ KE=`cat ${RUN_DIR}/stats_max.txt | tail -n 1 | awk '{print $7}'`
+ TIME=`grep "total time" ${RUN_DIR}/log.0000.out | awk '{print $4}'`
+ DURATION=`grep "config_run_duration" ${RUN_DIR}/namelist.input`
+
+ echo "${MESH}_${PROC}procs:" >> first
+ echo "$DURATION" >> second
+ echo "Final KE: ${KE}" >> third
+ echo "Total time: ${TIME}" >> fourth
+
+ echo "${MESH%km*} ${PROC} ${TIME}" >>timing_results2.txt
+ echo `cat time_tmp` " ${TIME}" > time_tmp
+ done
+ echo `cat time_tmp` " ; ... % " "${MESH}" >> timing_results3.txt
+ done
+
+ echo " ]'/86400.; % convert s to day" >> timing_results3.txt
+
+ paste first second third fourth > timing_results.txt
+
+ rm first second third fourth time_tmp
+elif [ $1 == 'clean' ]
+then
+
+ rm -f *.txt
+ rm -rf runs
+ rm -f start_times.sh
+ rm -f cancel_jobs.sh
+ rm -f job_ids
+
+else
+ echo "Invalid usage:"
+ echo "\t./performanceTest.sh [ACTION]"
+ echo " "
+ echo "\tcurrent actions include: setup submit postprocess clean"
+fi
Property changes on: branches/ocean_projects/performance_testing/performanceTest.sh
___________________________________________________________________
Added: svn:executable
+ *
Added: branches/ocean_projects/performance_testing/script_template.sh
===================================================================
--- branches/ocean_projects/performance_testing/script_template.sh (rev 0)
+++ branches/ocean_projects/performance_testing/script_template.sh 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1,8 @@
+#! /bin/bash
+#PBS -N run_name
+#PBS -q regular
+#PBS -l walltime=20:00
+#PBS -l mppwidth=num_procs
+cd working_dir
+
+aprun -n num_procs ocean_model_executable
Added: branches/ocean_projects/performance_testing/script_template_hopper.sh
===================================================================
--- branches/ocean_projects/performance_testing/script_template_hopper.sh (rev 0)
+++ branches/ocean_projects/performance_testing/script_template_hopper.sh 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1,7 @@
+#PBS -N run_name
+#PBS -q regular
+#PBS -l walltime=20:00
+#PBS -l mppwidth=num_procs
+cd working_dir
+
+aprun -n num_procs ocean_model_executable
Added: branches/ocean_projects/performance_testing/script_template_lobo.sh
===================================================================
--- branches/ocean_projects/performance_testing/script_template_lobo.sh (rev 0)
+++ branches/ocean_projects/performance_testing/script_template_lobo.sh 2011-11-28 16:43:40 UTC (rev 1215)
@@ -0,0 +1,7 @@
+#! /bin/tcsh
+#MSUB -N run_name
+#MSUB -l walltime=20:00
+#MSUB -l nodes=num_nodes:ppn=procs_per_node
+#MSUB -d working_dir
+
+mpirun -np num_procs ocean_model_executable
</font>
</pre>