<p><b>kavulich@ucar.edu</b> 2013-10-03 20:02:36 -0600 (Thu, 03 Oct 2013)</p><p>Removing non-standard packages; specifically, fancyheaders and tabu<br>
</p><hr noshade><pre><font color="gray">Modified: trunk/wrfvar/3DVAR_technote/acronyms.tex
===================================================================
--- trunk/wrfvar/3DVAR_technote/acronyms.tex 2013-10-02 17:58:35 UTC (rev 443)
+++ trunk/wrfvar/3DVAR_technote/acronyms.tex 2013-10-04 02:02:36 UTC (rev 444)
@@ -3,8 +3,8 @@
This section highlights the different acronyms used in this technical note, giving their meaning, definitions, and links to more information.
-\begin{longtabu} to \linewidth {p{2cm}p{10cm}p{10cm}}
-\rowfont\bfseries Acronym & Meaning & Definition \\ \hline
+\begin{longtable}{p{2cm}p{10cm}p{10cm}}
+\rowstyle{\bfseries} Acronym & Meaning & Definition \\ \hline
\endhead
\\ \rowcolor{light-gray}
@@ -24,4 +24,4 @@
\\ WRFDA & Weather Research and Forecasting model Data Assimilation system & The data assimilation system for the WRF model
(\url{http://www.mmm.ucar.edu/wrf/users/wrfda/})
-\end{longtabu}
+\end{longtable}
Modified: trunk/wrfvar/3DVAR_technote/description.tex
===================================================================
--- trunk/wrfvar/3DVAR_technote/description.tex 2013-10-02 17:58:35 UTC (rev 443)
+++ trunk/wrfvar/3DVAR_technote/description.tex 2013-10-04 02:02:36 UTC (rev 444)
@@ -19,8 +19,8 @@
% Use changebar package for highlighting changes
\usepackage{changebar}
%
-% Use fancyheadings package for headers and footers
-\usepackage{fancyheadings}
+% Use fancyhdr package for headers and footers
+\usepackage{fancyhdr}
\lhead[\wrf~Scientific Description]{\wrf~Scientific Description}
\rhead[April, 2013]{April 22, 2013}
@@ -28,7 +28,7 @@
\usepackage[page]{appendix}
% Use packages longtable, pdflscape, endnotes, and color for namelist appendix, define gray
-\usepackage{longtable,tabu}
+\usepackage{longtable}
\usepackage{pdflscape}
\usepackage{endnotes}
\usepackage{color, colortbl}
@@ -41,9 +41,7 @@
% Use "chngcntr" for table numbering
\usepackage{chngcntr}
\counterwithin{table}{chapter}
-% Use hyperref to insert links in pdf documents SHOULD ALWAYS BE LAST
-%\usepackage[colorlinks,citecolor=black,linkcolor=black,urlcolor=black]{hyperref}
-\usepackage[colorlinks,citecolor=blue,linkcolor=red,urlcolor=cyan]{hyperref}
+
% Set up page layout
\setlength{\textwidth}{6.75in}
\setlength{\oddsidemargin}{-0.0in}
@@ -56,6 +54,15 @@
\setlength{\footskip}{0.5in}
\setlength{\tabcolsep}{0.1in}
%
+
+% Use "array" package to stylize tables; see http://www.tex.ac.uk/cgi-bin/texfaq2html?label=wholerow
+\usepackage{array}
+</font>
<font color="blue">ewcolumntype{$}{>{\global\let\currentrowstyle\relax}}
+</font>
<font color="blue">ewcolumntype{^}{>{\currentrowstyle}}
+</font>
<font color="gray">ewcommand{\rowstyle}[1]{\gdef\currentrowstyle{#1}%
+ #1\ignorespaces
+}
+
% Include some coding shortcuts
\def \eg{{\emph{e.g.} }}
\def \ie{{\emph{i.e.} }}
@@ -64,6 +71,10 @@
</font>
<font color="black">ewcommand{\xbmf}[1]{\hbox{\sffamily\slshape #1}}
</font>
<font color="gray">ewcommand{\xmathbf}{\boldsymbol}
+% Use hyperref to insert links in pdf documents SHOULD ALWAYS BE LAST
+%\usepackage[colorlinks,citecolor=black,linkcolor=black,urlcolor=black]{hyperref}
+\usepackage[colorlinks,citecolor=blue,linkcolor=red,urlcolor=cyan]{hyperref}
+
\begin{document}
\pagestyle{plain}
%\pagestyle{fancy}
Modified: trunk/wrfvar/3DVAR_technote/namelist.tex
===================================================================
--- trunk/wrfvar/3DVAR_technote/namelist.tex 2013-10-02 17:58:35 UTC (rev 443)
+++ trunk/wrfvar/3DVAR_technote/namelist.tex 2013-10-04 02:02:36 UTC (rev 444)
@@ -6,9 +6,8 @@
\textbf{Options highlighted in gray (\colorbox{light-gray}{like this}) are not recommended, as they are either obsolete or for debugging purposes only.}
-%\begin{tabular}[t]{lllp{5cm}}
-\begin{longtabu} to \linewidth {p{4cm}lp{1cm}p{3cm}p{13cm}}
-\rowfont\bfseries Name & Type & Size\endnote{A size of ``1'' indicates a scalar value, a size greater than one indicates a vector of the indicated length. See the appropriate section on namelist formatting and handling for more information.} & Default & Description \\ \hline
+\begin{longtable}[t]{llllp{5cm}}
+\rowstyle{\bfseries} Name & Type & Size\endnote{A size of ``1'' indicates a scalar value, a size greater than one indicates a vector of the indicated length. See the appropriate section on namelist formatting and handling for more information.} & Default & Description \\ \hline
\endhead
\\ \hspace{10 pt}\textbf{\&wrfvar1}
@@ -365,7 +364,8 @@
\\ enable\_identity & logical & 1 & .false. & enable identity AD/TL model
\\ trajectory\_io & logical & 1 & .true. & 0:disk IO;1:memory IO
\\ var4d\_detail\_out & logical & 1 & .false. & true:output perturbation, gradient to disk
-\end{longtabu}
+\end{longtable}
+
\theendnotes
\section{Namelist formatting and registry details}
Modified: trunk/wrfvar/3DVAR_technote/namelist_all.tex
===================================================================
--- trunk/wrfvar/3DVAR_technote/namelist_all.tex 2013-10-02 17:58:35 UTC (rev 443)
+++ trunk/wrfvar/3DVAR_technote/namelist_all.tex 2013-10-04 02:02:36 UTC (rev 444)
@@ -6,6 +6,7 @@
Options highlighted in gray (\colorbox{light-gray}{like this}) are not recommended, as they are either obsolete, do not apply for 3DVAR assimilation, or are for debugging purposes only.
+\begin{comment}
%\begin{tabular}[t]{lllp{5cm}}
\begin{longtabu} to \linewidth {llp{1cm}p{3cm}p{13cm}}
\rowfont\bfseries Name & Type & Size\endnote{A size of ``1'' indicates a scalar value, a size greater than one indicates a vector of the indicated length. See the appropriate section on namelist formatting and handling for more information.} & Default & Description \\ \hline
@@ -370,6 +371,7 @@
\\ trajectory\_io & logical & 1 & .true. & 0:disk IO;1:memory IO
\\ var4d\_detail\_out & logical & 1 & .false. & true:output perturbation, gradient to disk
\end{longtabu}
+\end{comment}
\theendnotes
\section{Namelist formatting and registry details}
Modified: trunk/wrfvar/3DVAR_technote/quickstart.tex
===================================================================
--- trunk/wrfvar/3DVAR_technote/quickstart.tex 2013-10-02 17:58:35 UTC (rev 443)
+++ trunk/wrfvar/3DVAR_technote/quickstart.tex 2013-10-04 02:02:36 UTC (rev 444)
@@ -227,12 +227,12 @@
You should now be ready to run WRFDA--3DVAR. Depending on whether you compiled to run in parallel (dmpar) or serial, the command to run WRFDA will be different:
\begin{center}
-\begin{tabu} to \linewidth {p{3.3in}p{3.3in}}
+\begin{tabular}{p{3.3in}p{3.3in}}
\large{\textbf{For a serial run}} & \large{\textbf{For parallel run}} \\[1pt]
\texttt{./da\_wrfvar.exe > \& wrfda.log} & \texttt{mpirun -np 4 da\_wrfvar.exe} \\[1pt]
In a serial run, you just need to run the main executable directly, \texttt{da\_wrfvar.exe}. However, it is useful to redirect the output messages to a log file for later review, which is what the ``\texttt{> \& wrfda.log}'' portion of the command does. This output will contain information about the observations being assimilated, the minimization process, and any errors reported. &
In a parallel run, you must invoke MPI (Message Passing Interface) to run WRFDA; for most platforms this is done with the \texttt{mpirun} command. See the ``Parallelization'' section (\ref{parallelization}) for more information. \\
- \end{tabu}
+ \end{tabular}
\end{center}
\section*{Output files}
@@ -245,7 +245,7 @@
}
\label{tab:req-files-conv}
\vspace*{3mm}
-\begin{tabu} to \linewidth {|l|l|p{4in}|}
+\begin{tabular}{|l|l|p{4in}|}
\hline \textbf{Output file} & \textbf{Format} & \textbf{Description} \\
\hline \texttt{namelist.output.da} & ASCII & All namelist values used in the run, including defaults from the Registry for those values
not specified by the user \\
@@ -255,7 +255,7 @@
each processor\\
\hline \texttt{wrfvar\_output} & netCDF & The analysis created by the assimilation process \\
\hline
-\end{tabu}
+\end{tabular}
\end{center}
\vspace*{-5mm}
\end{table}
</font>
</pre>