[Dart-dev] Added/ Revision: 13143

[dart at ucar.edu]

thoar at ucar.edu
2019-05-01 10:02:06 -0600 (Wed, 01 May 2019)
217
Updating to the rma_trunk & Manhattan. 

matlab changes to support more matlab versions and user-supplied date formats.
mpi_utilities to support pause-resume communicators and namelists.
fixed some copyright issues.




Index: DART/branches/reanalysis
===================================================================
--- DART/branches/reanalysis	2019-04-30 22:01:40 UTC (rev 13142)
+++ DART/branches/reanalysis	2019-05-01 16:02:06 UTC (rev 13143)

Property changes on: DART/branches/reanalysis
___________________________________________________________________
Modified: svn:mergeinfo
## -10,7 +10,7 ##
 /DART/branches/model_mod_changes:11403-11604
 /DART/branches/pertirb_tool:12695-12764
 /DART/branches/qc8:12643-12657
-/DART/branches/qc8diags:13002-13108
+/DART/branches/qc8diags:13002-13130
 /DART/branches/recam:12028-13088
 /DART/branches/rma_array_nml:11814-11839
 /DART/branches/rma_cam_fv:9552-9728
## -44,7 +44,7 ##
 /DART/branches/rma_sprint:8095-8166
 /DART/branches/rma_state_structure_test_dir:9472-9676
 /DART/branches/rma_state_structure_unit_test:9691-10268
-/DART/branches/rma_trunk:13079-13097
+/DART/branches/rma_trunk:13079-13140
 /DART/branches/rma_trunk_clamping:8786-8801
 /DART/branches/rma_trunk_filename:8011-8157
 /DART/branches/rma_trunk_get_state_fun:8568-8596
Modified: DART/branches/reanalysis/CHANGELOG
===================================================================
--- DART/branches/reanalysis/CHANGELOG	2019-04-30 22:01:40 UTC (rev 13142)
+++ DART/branches/reanalysis/CHANGELOG	2019-05-01 16:02:06 UTC (rev 13143)
@@ -745,10 +745,10 @@
 - Removed makefiles for the obsolete trans_time program.
 
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
-+ Jun 18 2018 :: CAM/CESM 2.0, DART QC 8, closest_member_tool  Revision: 12681 
++ Jun 18 2018 :: CAM/CESM 2.0, DART QC 8, closest_member_tool  Revision: 12682
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 
-- Support for CAM assimilations in the CESM 2.0 release.  See 
+- Support for CAM-FV assimilations in the CESM 2.0 release.  See 
   documentation in models/cam-fv/doc/README_cam-fv for details.
 
 - obs_diag and matlab scripts updated to report statistics on DART QC 8, 
@@ -771,94 +771,64 @@
 - Added more functions to the netcdf_utilities_mod.f90
 
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
-+ Aug 03 2018 :: performance fix for distributed mean          Revision: 12758
++ Aug 03 2018 :: performance fix for distributed mean          Revision: 12758 
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 
 - Important performance fix if model does vertical conversion for localization.
-Results were not wrong but performance was poor if 'distribute_mean = .true.'
-was selected in the &assim_tools_nml namelist.
-Now distributing the mean runs in close to the non-distributed time and uses
-much less memory for large models. This only impacts models which do a vertical
-conversion of either the observation or state vertical coordinate for localization
-AND which set &assim_tools_nml :: distribute_mean = .true. to use less memory.
-When using a distributed mean "convert_all_obs_verticals_first = .true." should
-be set.  If your observations will impact most of the model state, then
-"convert_all_state_verticals_first = .true.' can also be set.
+  Results were not wrong but performance was poor if 'distribute_mean = .true.' 
+  was selected in the &assim_tools_nml namelist.
 
-++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
-+ Aug 31 2018 :: WRF Polar, CICE, obs_diag files               Revision: 12807
-++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+  Now distributing the mean runs in close to the non-distributed time and uses
+  much less memory for large models. This only impacts models which do a vertical
+  conversion of either the observation or state vertical coordinate for localization
+  AND which set &assim_tools_nml :: distribute_mean = .true. to use less memory.
 
-- fix for WRF's wind direction vectors when using the Polar Stereographic 
-  map projection.  Thanks to Kevin Manning for the fix.
+  When using a distributed mean "convert_all_obs_verticals_first = .true." should 
+  be set.  If your observations will impact most of the model state, then 
+  "convert_all_state_verticals_first = .true.' can also be set.
 
-- removed 'allow_missing_in_clm' flag from the &assim_tools_nml namelist in
-  the CICE work directory.  The flag moved to a different namelist and the
-  CICE model doesn't care about it.
-
-- increased the maximum number of input files to obs_diag from 100 to 10000.
-
-- Yongfei Zhang and Cecilia Bitz added improvements to the CICE model and 
-  observation converters and forward operators. These changes also use the
-  locations of the 'new' glade filesystem. They used CESM tag: cesm2_0_alpha06n
-
-- Worked with Yongfei Zhang to remove prototype codes and more completely
-  document observation converters and data sources for cice assimilation.
-
-- Default routines now create a time variable as time(time) to allow multiple
-  files to be concatinated along the unlimited dimension more easily.  Also
-  conforms to the netCDF convention for coordinate dimensions.
-
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
-+ Nov 01 2018 :: Adaptive Inflation, dewpoint, obs_diag        Revision: 13006
++ Apr 30 2019 :: cam-fv refactor, posteriors optional, QC 8    Revision: 13138
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 
-- Updated dewpoint equation to avoid dividing by zero given a very unlikely