[Dart-dev] DART/branches Revision: 12951

[dart at ucar.edu]

thoar at ucar.edu
2019-01-04 15:52:42 -0700 (Fri, 04 Jan 2019)
210
After the setup finished, I changed CASEROOT:input.nml num_output_obs_members = 70 and submitted.
This ran the initial cycle just fine. I changed CONTINUE_RUN to TRUE, and the second cycle also ran.
Success!!




Modified: DART/branches/recam/models/cam-fv/shell_scripts/cesm2_1/setup_netcdf_test
===================================================================
--- DART/branches/recam/models/cam-fv/shell_scripts/cesm2_1/setup_netcdf_test	2019-01-04 21:12:52 UTC (rev 12950)
+++ DART/branches/recam/models/cam-fv/shell_scripts/cesm2_1/setup_netcdf_test	2019-01-04 22:52:42 UTC (rev 12951)
@@ -10,8 +10,9 @@
 # it takes longer than is allowed for an interactive job.
 # In that case, it can be run as a batch job using the directives below,
 # or using a command like qcmd.
-
+#
 #--------------------------------------------
+#
 # The job name should be the name of this script(file), 
 # or this file may not be archived in $caseroot causing DART_config to fail.
 # Resources I want:
@@ -18,8 +19,8 @@
 #    select=#nodes
 #    ncpus=#CPUs/node
 #    mpiprocs=#MPI_tasks/node
-
-#PBS  -N setup_netcdf
+#
+#PBS  -N setup_netcdf_test
 #PBS  -A P86850054
 #PBS  -q share
 #PBS  -l select=1:ncpus=4:mpiprocs=4
@@ -28,8 +29,6 @@
 #PBS  -M thoar at ucar.edu
 #PBS  -o CESM2_1_80_netcdf.bld0
 #PBS  -j oe 
-
-#*******************************************************************************
 #
 # ---------------------
 # Purpose
@@ -643,7 +642,8 @@
 echo 'Ignore "WARNING:: mosart.buildnml . . .".  Those files will be provided later'
 
 echo 'Before case.setup, modules are'
-/glade/u/apps/ch/opt/lmod/7.5.3/lmod/lmod/libexec/lmod list
+source /etc/profile.d/modules.csh
+module list
 
 ./case.setup
 
@@ -659,7 +659,7 @@
 # Preserve a copy of this script as it was run.
 if ($?LSB_JOBNAME) then
    # This only works if the job name in the BSUB or PBS directives 
-   # is the name of this script.
+   # is the name of this script. Cannot figure out another way to do this.
    setenv setup_file_name $LSB_JOBNAME
 else if ($?PBS_JOBNAME) then
    setenv setup_file_name $PBS_JOBNAME
@@ -666,11 +666,12 @@
 else
    setenv setup_file_name $0:t
 endif
-
-if ($COPYV == "FALSE") \
-   echo "Copying ${DART_CESM_scripts}/$setup_file_name ${setup_file_name}.original"
 ${COPY} -f       ${DART_CESM_scripts}/$setup_file_name ${setup_file_name}.original
 
+#TJH question: does this not work all the time
+#set ThisFileName = $0:t
+#${COPY} $ThisFileName       ${caseroot}/${ThisFileName}.original
+
 # Define how often sets of restart files will be archived,
 # in order to conserve disk space during a multi-cycle job.
 setenv save_every_Mth_day_restart 3
@@ -714,7 +715,7 @@
        -e '/ptile/c/#BSUB  -R "span[ptile=1]"'             \
        case.st_archive >! temp.$$  || exit 55
    ${MOVE} temp.$$ case.st_archive
-   ./xmlchange --file env_batch.xml --subgroup case.st_archive --id JOB_QUEUE --val caldera
+   ./xmlchange --subgroup case.st_archive --id JOB_QUEUE --val caldera
    
 else if ($?PBS_JOBNAME) then
    # It would be nice to put the $PBS_JOBID value into the job name and st err/out file names,
@@ -725,12 +726,12 @@
        -e "/\-N /a\#PBS  -o ./${case}.st_arch.stdouterr"                       \
        case.st_archive >! temp.$$  || exit 55
    ${MOVE} temp.$$ case.st_archive
-   ./xmlchange --file env_batch.xml --subgroup case.st_archive --id JOB_QUEUE --val share
+   ./xmlchange --subgroup case.st_archive --id JOB_QUEUE --val share
    
 endif
 chmod 755 case.st_archive
 
-./xmlchange --file env_batch.xml --subgroup case.st_archive --id JOB_WALLCLOCK_TIME --val 1:00
+./xmlchange --subgroup case.st_archive --id JOB_WALLCLOCK_TIME --val 1:00
 
 # ==============================================================================
 # Modify namelist templates for each instance.
@@ -893,7 +894,7 @@
    #    echo " solar_data_file = '${cesmdata}/atm/cam/solar/spectral_irradiance_Lean_1610-2140_ann_c100408.nc'" >> ${fname}
    # endif
 
-# ===========================================================================
+   # ===========================================================================
    set fname = "user_nl_clm${inst_string}"