[Dart-dev] DART/branches Revision: 12455

[dart at ucar.edu]

thoar at ucar.edu
2018-03-20 07:11:20 -0600 (Tue, 20 Mar 2018)
552
CLM5_setup_spinup is working - but it is using netcdf, not pnetcdf since pnetcdf crashes
because the finidat interpolation filename is not multi-instance friendly. Don't know
why, but netcdf seems to not crash - it is a reported bug.

CESM2_0_setup_hybrid starts from restart files that do not need to be interpolated,
so it can use pnetcdf. I am using it to test if you can run-time switch between
pnetcdf and netcdf. If possible, I'd like to change the continuation runs of the
spinup to use pnetcdf since those runs do not need to be interpolated.




Modified: DART/branches/cesm_clm/models/clm/shell_scripts/cesm2_0/CESM2_0_setup_hybrid
===================================================================
--- DART/branches/cesm_clm/models/clm/shell_scripts/cesm2_0/CESM2_0_setup_hybrid	2018-03-19 21:16:09 UTC (rev 12454)
+++ DART/branches/cesm_clm/models/clm/shell_scripts/cesm2_0/CESM2_0_setup_hybrid	2018-03-20 13:11:20 UTC (rev 12455)
@@ -27,11 +27,10 @@
 # incorporate any needed changes into this script.
 # ==============================================================================
 
-setenv CASE           clm5_hybrid
-setenv resolution     f09_g16
-setenv compset        I2000Clm50BgcCrop
+setenv CASE           clm5_hybrid_e4
+setenv resolution     f09_f09
 setenv compset        2000_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV
-setenv cesmtag        clm_dev_branch
+setenv cesmtag        ctsm
 setenv num_instances  4
 
 # ==============================================================================
@@ -89,13 +88,11 @@
 # startdate  The date used as the starting date for the hybrid run.
 # ==============================================================================
 
-setenv refcase      agu_startup_CLM50BGCC_20e
-setenv refyear      2000
+setenv refcase      clm5_f09_spinup80
+setenv refyear      1999
 setenv refmon       01
 setenv refday       01
 setenv reftod       00000
-
-# useful combinations of time that we use below
 setenv refdate      $refyear-$refmon-$refday
 setenv reftimestamp $refyear-$refmon-$refday-$reftod
 
@@ -113,7 +110,7 @@
 #      less than 10 minutes on yellowstone using 1800 pes (120 nodes)
 # ==============================================================================
 
-setenv queue        premium
+setenv queue        economy
 setenv timewall     0:20
 setenv short_term_archiver off
 
@@ -227,7 +224,7 @@
 setenv CIMEROOT              `./xmlquery CIMEROOT              --value`
 setenv CASEROOT              `./xmlquery CASEROOT              --value`
 
-# Make sure the case is configured with a data ocean.
+# Make sure the case is configured with a stub ocean and a data atmosphere.
 
 if ( (${COMP_OCN} != socn) || (${COMP_ATM} != datm) ) then
    echo " "
@@ -294,7 +291,7 @@
 ./xmlchange RUN_STARTDATE=${startdate}
 
 # pnetcdf is default
-./xmlchange PIO_TYPENAME=netcdf
+./xmlchange PIO_TYPENAME=pnetcdf
 
 # Task layout:
 # Set the nodes_per_instance below to match your case.
@@ -348,8 +345,8 @@
 
 # DEBUG = TRUE implies turning on run and compile time debugging.
 # INFO_DBUG level of debug output, 0=minimum, 1=normal, 2=more, 3=too much.
-./xmlchange DEBUG=TRUE
-./xmlchange INFO_DBUG=2
+./xmlchange DEBUG=FALSE
+./xmlchange INFO_DBUG=0
 
 # ==============================================================================
 # Modify namelist templates for each instance.
@@ -393,7 +390,7 @@
 
    foreach FNAME ( user_datm.streams.txt*${inst_string} )
       echo "modifying $FNAME"
-      sed s/NINST/${inst_string}/g $FNAME >! temp
+      sed s/_NINST/${inst_string}/g $FNAME >! temp
       sed s/RUNYEAR/${stream_year_first}/g temp >! $FNAME
    end
    ${REMOVE} temp
@@ -402,6 +399,8 @@
    set fname = "user_nl_clm${inst_string}"
    # ===========================================================================
 
+#   set finidat_name = "finidat${inst_string}_interp_dest.nc"
+
    echo "hist_empty_htapes = .true."                                    >> ${fname}
    echo "hist_fincl1 = 'NEP','TOTECOSYSC','TOTVEGC','TLAI'"             >> ${fname}
    echo "hist_fincl2 = 'NEP','FSH','EFLX_LH_TOT_R'"                     >> ${fname}
@@ -412,6 +411,7 @@
    echo "hist_dov2xy = .true.,.true.,.false."   >> ${fname}
    echo "hist_type1d_pertape = ' ',' ',' '"     >> ${fname}
    echo "dtime = $clm_dtime"                    >> ${fname}
+#   echo "finidat_interp_dest = $finidat_name'   >> ${fname}
 
    @ inst ++
 end

Modified: DART/branches/cesm_clm/models/clm/shell_scripts/cesm2_0/CLM5_setup_spinup