[Dart-dev] DART/branches Revision: 12549

[dart at ucar.edu]

thoar at ucar.edu
2018-04-20 15:16:58 -0600 (Fri, 20 Apr 2018)
112
Shorter run-time for testing.
Uses observation files with timestamps.
Renames output files to have timestamps.




Modified: DART/branches/openggcm/models/openggcm/shell_scripts/run_filter.qsub
===================================================================
--- DART/branches/openggcm/models/openggcm/shell_scripts/run_filter.qsub	2018-04-20 19:34:48 UTC (rev 12548)
+++ DART/branches/openggcm/models/openggcm/shell_scripts/run_filter.qsub	2018-04-20 21:16:58 UTC (rev 12549)
@@ -54,7 +54,7 @@
 #PBS -e filter.err
 #PBS -o filter.log
 #PBS -l nodes=1:ppn=32
-#PBS -l walltime=2:00:00
+#PBS -l walltime=0:45:00
 
 #----------------------------------------------------------------------
 # Turns out the scripts are a lot more flexible if you don't rely on 
@@ -117,10 +117,9 @@
 echo
 
 #----------------------------------------------------------------------
+# actually start doing something ...
 #----------------------------------------------------------------------
 
-set myname = $0          # this is the name of this script
-
 alias die 'echo FATAL: \!*; exit 1'
 
 cd $ORIGINALDIR
@@ -169,16 +168,17 @@
 set BASETIME = 1966-01-01_00:00:00
 
 #-----------------------------------------------------------------------------
-# Get the DART executables, scripts, and input files
+# Get the DART executables, scripts, and input files.
+# The run-time input (input.nml) must have been staged in $RUNPATH.
+# At some point, maybe all these files should be pre-staged. It would 
+# enable multiple experiments to be carried out at the same time.
 #-----------------------------------------------------------------------------
 
 # executables
 ${COPY} ${DARTDIR}/work/advance_time.exe .  || exit 1
 ${COPY} ${DARTDIR}/work/filter.exe       .  || exit 1
-${COPY} ${DARTDIR}/work/input.nml        .  || exit 1
 
 set SAMP_ERR_FILE = ${DARTROOT}/assimilation_code/programs/gen_sampling_err_table/work/sampling_error_correction_table.nc
-
 ${COPY} ${SAMP_ERR_FILE}  .
 
 # staging inflation files
@@ -185,6 +185,10 @@
 ${COPY} ${DARTDIR}/data/output_priorinf_mean.nc  input_priorinf_mean.nc
 ${COPY} ${DARTDIR}/data/output_priorinf_sd.nc    input_priorinf_sd.nc
 
+#-----------------------------------------------------------------------------
+# Start waiting for something to do ...
+#-----------------------------------------------------------------------------
+
 @ ncycle = 0
 while ( 1 ) 
    
@@ -194,6 +198,7 @@
 
       #------------------------------------------------------------
       # Get the time 
+      #------------------------------------------------------------
 
       set semaphore = `head -n 1 semaphore_files.txt`
       set TimeString = `head -n 1 $semaphore | sed -e "s/\..*//"`
@@ -210,14 +215,14 @@
 
       #------------------------------------------------------------
       # link the obs
+      #------------------------------------------------------------
 
       ${REMOVE} obs_seq.out
-#     ${LINK} ${OBSERVATIONDIR}/obs_seq.${ModelTime} obs_seq.out || exit 1
+      ${LINK} ${OBSERVATIONDIR}/obs_seq${ModelTime} obs_seq.out || exit 1
 
-      ${LINK} ${OBSERVATIONDIR}/obs_seq201303170100 obs_seq.out || exit 1
-
       #------------------------------------------------------------
       # input.nml presumes 'input_list.txt', 'output_list.txt'
+      #------------------------------------------------------------
 
       ls -1 */target/DATA.ionos2.nc >! input_list.txt
       sed -e "s/DATA.ionos2.nc/dart_posterior.nc/" input_list.txt >! output_list.txt
@@ -227,17 +232,39 @@
       ${MPI} ./filter.exe || exit 2
 
       #------------------------------------------------------------
-      # rename output files (inflation, diagnostics, etc)
-     
-      ls -lrt
+      # rename output files (inflation, diagnostics, etc) to be unique
+      #------------------------------------------------------------
+    
+      foreach FILE ( preassim_*.nc output_*.nc obs_seq.final )
+         set BASE = $FILE:r
+         set EXT  = $FILE:e
+         \mv -v $FILE ${BASE}_${ModelTime}.${EXT}
+      end
 
       #------------------------------------------------------------
-      # update inflation files