[Dart-dev] DART/releases Revision: 11832

[dart at ucar.edu]

nancy at ucar.edu
2017-07-18 13:29:35 -0600 (Tue, 18 Jul 2017)
63
push changes in documentation and 2 bug fixes to the release.




Index: DART/releases/Manhattan
===================================================================
--- DART/releases/Manhattan	2017-07-18 19:28:57 UTC (rev 11831)
+++ DART/releases/Manhattan	2017-07-18 19:29:35 UTC (rev 11832)

Property changes on: DART/releases/Manhattan
___________________________________________________________________
Modified: svn:mergeinfo
## -32,7 +32,7 ##
 /DART/branches/rma_sprint:8093-8164
 /DART/branches/rma_state_structure_test_dir:9470-9674
 /DART/branches/rma_state_structure_unit_test:9689-10266
-/DART/branches/rma_trunk:11347-11798
+/DART/branches/rma_trunk:11347-11831
 /DART/branches/rma_trunk_clamping:8784-8799
 /DART/branches/rma_trunk_filename:8009-8155
 /DART/branches/rma_trunk_get_state_fun:8566-8594
Modified: DART/releases/Manhattan/CHANGELOG
===================================================================
--- DART/releases/Manhattan/CHANGELOG	2017-07-18 19:28:57 UTC (rev 11831)
+++ DART/releases/Manhattan/CHANGELOG	2017-07-18 19:29:35 UTC (rev 11832)
@@ -457,7 +457,7 @@
 your existing namelists or obs_diag will error out right away.
 
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
-+ July 7th 2017 :: cam-fv, MPAS-ATM scripts, single file i/o.  $Revision$
++ July 7th 2017 :: cam-fv, MPAS-ATM scripts, single file i/o.  Revision: 11807
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 
 models/mpas_atm: scripts completely revised for the Manhattan release.
@@ -476,10 +476,24 @@
   in the repository.  (Remove it from any private path_names_* files.)
 
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
-+ MMM DD 2017 :: next update.  Revision: 
++ July 18 2017 :: bug fixes, documentation updates.  $Revision$
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 
+- fixed bug in obs_impact_tool when generating the run-time table.  specifying
+  a generic quantity resulted in selecting the wrong specific obs types.
 
+- fixed a bug that would not allow filter to start from a single ensemble member
+  if single_file_in was true.
+
+- updates to HTML documentation especially for types/quantities (replacing kinds)
+
+- updates to input.nml namelists, code comments, and shell scripts where
+  names changed from 'restart' to 'state' for input and output files.
+
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++ MMMM DD 2017 :: next revision summary.  Revision: 
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+
 # <next few lines under version control, do not edit>
 # $URL$
 # $Revision$

Modified: DART/releases/Manhattan/assimilation_code/modules/assimilation/filter_mod.dopplerfold.f90
===================================================================
--- DART/releases/Manhattan/assimilation_code/modules/assimilation/filter_mod.dopplerfold.f90	2017-07-18 19:28:57 UTC (rev 11831)
+++ DART/releases/Manhattan/assimilation_code/modules/assimilation/filter_mod.dopplerfold.f90	2017-07-18 19:29:35 UTC (rev 11832)
@@ -2209,9 +2209,9 @@
 
 !------------------------------------------------------------------
 !> Set file name information.  For members restarts can be read from
-!> a restart_file_list.txt or constructed using a stage name and
+!> an input_state_file_list or constructed using a stage name and
 !> num_ens.  The file_info handle knows whether or not there is an
-!> associated restart_file_list.txt. If no list is provided member
+!> associated input_state_file_list. If no list is provided member
 !> filenames are written as :
 !>    stage_member_####.nc (ex. preassim_member_0001.nc)
 !> extra copies are stored as :

Modified: DART/releases/Manhattan/assimilation_code/modules/assimilation/filter_mod.f90
===================================================================
--- DART/releases/Manhattan/assimilation_code/modules/assimilation/filter_mod.f90	2017-07-18 19:28:57 UTC (rev 11831)
+++ DART/releases/Manhattan/assimilation_code/modules/assimilation/filter_mod.f90	2017-07-18 19:29:35 UTC (rev 11832)
@@ -2195,9 +2195,9 @@
 
 !------------------------------------------------------------------
 !> Set file name information.  For members restarts can be read from
-!> a restart_file_list.txt or constructed using a stage name and
+!> an input_state_file_list or constructed using a stage name and
 !> num_ens.  The file_info handle knows whether or not there is an
-!> associated restart_file_list.txt. If no list is provided member
+!> associated input_state_file_list. If no list is provided member
 !> filenames are written as :
 !>    stage_member_####.nc (ex. preassim_member_0001.nc)
 !> extra copies are stored as :

Modified: DART/releases/Manhattan/assimilation_code/modules/io/direct_netcdf_mod.f90
===================================================================
--- DART/releases/Manhattan/assimilation_code/modules/io/direct_netcdf_mod.f90	2017-07-18 19:28:57 UTC (rev 11831)
+++ DART/releases/Manhattan/assimilation_code/modules/io/direct_netcdf_mod.f90	2017-07-18 19:29:35 UTC (rev 11832)
@@ -494,7 +494,7 @@
 integer :: ens_size, extra_size, time_size, var_size, elm_count, ndims
 integer :: my_pe, recv_pe, recv_start, recv_end, start_rank
 integer :: start_pos, end_pos, send_start, send_end, start_point
-logical :: do_perturb, is_sender, is_receiver, is_member_copy, is_extra_copy
+logical :: do_perturb, is_sender, is_receiver, is_extra_copy