[Dart-dev] [7086] DART/trunk: added a simplified converter for tropical cyclone observations.
nancy at ucar.edu
nancy at ucar.edu
Wed Jul 23 09:03:23 MDT 2014
Revision: 7086
Author: nancy
Date: 2014-07-23 09:03:22 -0600 (Wed, 23 Jul 2014)
Log Message:
-----------
added a simplified converter for tropical cyclone observations.
creates best track vortex center latitude, longitude, minimum
sea level pressure and max wind speed observations. at this point
only the WRF model_mod has the forward operator code to assimilate
these obs types. also there are a plethora of variants on the
input format (fixed column widths, comma separated values,
column meanings, lat/lon in 10ths of a degree vs full degrees, etc).
the converter only supports a single input format but has
sections where other read format lines can easily be added.
also updated the observations html index page and the
main html index page.
Modified Paths:
--------------
DART/trunk/index.html
DART/trunk/observations/observations.html
Added Paths:
-----------
DART/trunk/observations/tropical_cyclone/
DART/trunk/observations/tropical_cyclone/data/
DART/trunk/observations/tropical_cyclone/data/README
DART/trunk/observations/tropical_cyclone/data/TC48_2012.atcf
DART/trunk/observations/tropical_cyclone/data/bal012013.dat
DART/trunk/observations/tropical_cyclone/tc_to_obs.f90
DART/trunk/observations/tropical_cyclone/tc_to_obs.html
DART/trunk/observations/tropical_cyclone/tc_to_obs.nml
DART/trunk/observations/tropical_cyclone/work/
DART/trunk/observations/tropical_cyclone/work/input.nml
DART/trunk/observations/tropical_cyclone/work/mkmf_advance_time
DART/trunk/observations/tropical_cyclone/work/mkmf_obs_sequence_tool
DART/trunk/observations/tropical_cyclone/work/mkmf_preprocess
DART/trunk/observations/tropical_cyclone/work/mkmf_tc_to_obs
DART/trunk/observations/tropical_cyclone/work/path_names_advance_time
DART/trunk/observations/tropical_cyclone/work/path_names_obs_sequence_tool
DART/trunk/observations/tropical_cyclone/work/path_names_preprocess
DART/trunk/observations/tropical_cyclone/work/path_names_tc_to_obs
DART/trunk/observations/tropical_cyclone/work/quickbuild.csh
-------------- next part --------------
Modified: DART/trunk/index.html
===================================================================
--- DART/trunk/index.html 2014-07-22 22:29:58 UTC (rev 7085)
+++ DART/trunk/index.html 2014-07-23 15:03:22 UTC (rev 7086)
@@ -180,20 +180,20 @@
</P>
<UL style="list-style: none;">
-<LI><A href="filter/filter.html">program filter</A> - the main assimilation code</LI>
-<LI><A href="perfect_model_obs/perfect_model_obs.html">program perfect_model_obs</A> - run a model to generate synthetic observation values</LI>
-<LI><A href="obs_sequence/create_obs_sequence.html">program create_obs_sequence</A> - interactive program to generate observations</LI>
-<LI><A href="obs_sequence/create_fixed_network_seq.html">program create_fixed_network_seq</A> - repeat a set of observations at multiple times</LI>
-<LI><A href="obs_sequence/obs_sequence_tool.html">program obs_sequence_tool</A> - general observation sequence file manipulation tool</LI>
-<LI><A href="utilities/restart_file_tool.html">program restart_file_tool</A> - utility for DART restart files</LI>
-<LI><A href="adaptive_inflate/fill_inflation_restart.html">program fill_inflation_restart</A> - initialize inflation files</LI>
-<LI><A href="time_manager/advance_time.html">program advance_time</A> - increment calendar times, useful for scripting loops</LI>
-<LI><A href="utilities/closest_member_tool.html">program closest_member_tool</A> - select DART restart file closest to mean</LI>
-<LI><A href="integrate_model/integrate_model.html">program integrate_model</A> - wrapper for models called as subroutines</LI>
-<LI><A href="preprocess/preprocess.html">program preprocess</A> - used during compiling</LI>
-<LI><A href="mkmf/mkmf.html">program mkmf</A> - used to generate makefiles during compiling</LI>
-<LI><A href="filter/wakeup_filter.html">program wakeup_filter</A> - used when filter runs a parallel model advance</LI>
-<LI><A href="system_simulation/system_simulation.html">program system_simulation (sampling error correction)</A> - generate the files used for Sampling Error Correction option</LI>
+<LI><A href="filter/filter.html">filter</A> - the main assimilation code</LI>
+<LI><A href="perfect_model_obs/perfect_model_obs.html">perfect_model_obs</A> - run a model to generate synthetic observation values</LI>
+<LI><A href="obs_sequence/create_obs_sequence.html">create_obs_sequence</A> - interactive program to generate observations</LI>
+<LI><A href="obs_sequence/create_fixed_network_seq.html">create_fixed_network_seq</A> - repeat a set of observations at multiple times</LI>
+<LI><A href="obs_sequence/obs_sequence_tool.html">obs_sequence_tool</A> - general observation sequence file manipulation tool</LI>
+<LI><A href="utilities/restart_file_tool.html">restart_file_tool</A> - utility for DART restart files</LI>
+<LI><A href="adaptive_inflate/fill_inflation_restart.html">fill_inflation_restart</A> - initialize inflation files</LI>
+<LI><A href="time_manager/advance_time.html">advance_time</A> - increment calendar times, useful for scripting loops</LI>
+<LI><A href="utilities/closest_member_tool.html">closest_member_tool</A> - select DART restart file closest to mean</LI>
+<LI><A href="integrate_model/integrate_model.html">integrate_model</A> - wrapper for models called as subroutines</LI>
+<LI><A href="preprocess/preprocess.html">preprocess</A> - used during compiling</LI>
+<LI><A href="mkmf/mkmf.html">mkmf</A> - used to generate makefiles during compiling</LI>
+<LI><A href="filter/wakeup_filter.html">wakeup_filter</A> - used when filter runs a parallel model advance</LI>
+<LI><A href="system_simulation/system_simulation.html">system_simulation </A> (sampling error correction) - generate the files used for Sampling Error Correction option</LI>
</UL>
<A NAME="Diagnostics"></A>
@@ -203,17 +203,17 @@
</P>
<UL style="list-style: none;">
-<LI><A href="diagnostics/oned/obs_diag.html">program oned/obs_diag</A> - low order model diagnostics</LI>
-<LI><A href="diagnostics/threed_sphere/obs_diag.html">program threed_sphere/obs_diag</A> - full 3d model diagnostics</LI>
-<LI><A href="obs_sequence/obs_seq_to_netcdf.html">program obs_seq_to_netcdf</A> - convert output obs sequence files into netcdf format</LI>
-<LI><A href="obs_sequence/obs_common_subset.html">program obs_common_subset</A> - select a common subset of obs from multiple files</LI>
-<LI><A href="obs_sequence/obs_selection.html">program obs_selection</A> - select a given set of obs from a longer sequence</LI>
-<LI><A href="obs_sequence/obs_seq_coverage.html">program obs_seq_coverage</A> - select a consistent set of obs through time</LI>
-<LI><A href="obs_sequence/obs_seq_verify.html">program obs_seq_verify</A> - convert obs to a netcdf file formatted for forecast verification</LI>
-<LI><A href="diagnostics/rms_diag.f90">program rms_diag</A> - example code to compute diagnostic values</LI>
-<LI><A href="utilities/compare_states.html">program compare_states</A> - compare fields within multiple restart files</LI>
-<LI><A href="utilities/model_mod_check.html">program model_mod_check</A> - development and testing tool during interface development</LI>
-<LI><A href="utilities/PrecisionCheck.html">program PrecisionCheck</A> - compiler/platform check of Fortran real/integer precision</LI>
+<LI><A href="diagnostics/oned/obs_diag.html">oned/obs_diag</A> - low order model diagnostics</LI>
+<LI><A href="diagnostics/threed_sphere/obs_diag.html">threed_sphere/obs_diag</A> - full 3d model diagnostics</LI>
+<LI><A href="obs_sequence/obs_seq_to_netcdf.html">obs_seq_to_netcdf</A> - convert output obs sequence files into netcdf format</LI>
+<LI><A href="obs_sequence/obs_common_subset.html">obs_common_subset</A> - select a common subset of obs from multiple files</LI>
+<LI><A href="obs_sequence/obs_selection.html">obs_selection</A> - select a given set of obs from a longer sequence</LI>
+<LI><A href="obs_sequence/obs_seq_coverage.html">obs_seq_coverage</A> - select a consistent set of obs through time</LI>
+<LI><A href="obs_sequence/obs_seq_verify.html">obs_seq_verify</A> - convert obs to a netcdf file formatted for forecast verification</LI>
+<LI><A href="diagnostics/rms_diag.f90">rms_diag</A> - example code to compute diagnostic values</LI>
+<LI><A href="utilities/compare_states.html">compare_states</A> - compare fields within multiple restart files</LI>
+<LI><A href="utilities/model_mod_check.html">model_mod_check</A> - development and testing tool during interface development</LI>
+<LI><A href="utilities/PrecisionCheck.html">PrecisionCheck</A> - compiler/platform check of Fortran real/integer precision</LI>
</UL>
<A NAME="Observations"></A>
@@ -222,24 +222,26 @@
</P>
<UL style="list-style: none;">
-<LI><A href="observations/observations.html">General observations introduction</A></LI>
+<LI><A href="observations/observations.html">Observation Conversion Introduction</A></LI>
+<LI> </LI>
<LI><A href="observations/AIRS/AIRS.html">AIRS data</A></LI>
<LI><A href="observations/Ameriflux/level4_to_obs.html">Ameriflux tower data</A></LI>
-<LI><A href="observations/COSMOS/COSMOS_development.html">COSMOS groundwater data (development format)</A></LI>
+<LI><A href="observations/COSMOS/COSMOS_development.html">COSMOS groundwater data </A> (development format)</LI>
<LI><A href="observations/COSMOS/COSMOS_to_obs.html">COSMOS groundwater data</A></LI>
<LI><A href="observations/gps/gps.html">GPS Radio Occultation data</A></LI>
<LI><A href="observations/GTSPP/GTSPP.html">GTSPP data</A></LI>
<LI><A href="observations/MADIS/MADIS.html">MADIS data</A></LI>
-<LI><A href="observations/MIDAS/MIDAS_to_obs.html">MIDAS TEC data (netcdf intermediate files)</A></LI>
+<LI><A href="observations/MIDAS/MIDAS_to_obs.html">MIDAS TEC data </A> (netcdf intermediate files)</LI>
<LI><A href="observations/NCEP/prep_bufr/prep_bufr.html">NCEP prepbufr to ascii</A></LI>
<LI><A href="observations/NCEP/ascii_to_obs/create_real_obs.html">NCEP ascii to obs_seq</A></LI>
<LI><A href="observations/quikscat/QuikSCAT.html">QuikSCAT data</A></LI>
<LI><A href="observations/radar/radar.html">Radar data</A></LI>
-<LI><A href="observations/snow/snow_to_obs.html">MODIS Snow data (ascii)</A></LI>
-<LI><A href="observations/MODIS/MODIS_README.html">MODIS data (ORNL DAAC)</A></LI>
+<LI><A href="observations/snow/snow_to_obs.html">MODIS Snow data </A> (ascii)</LI>
+<LI><A href="observations/MODIS/MODIS_README.html">MODIS data </A> (ORNL DAAC)</LI>
<LI><A href="observations/SSEC/SSEC.html">SSEC data</A></LI>
<LI><A href="observations/text/text_to_obs.html">ascii/text data</A></LI>
-<LI><A href="observations/tpw/tpw.html">Total Precipitable Water obs (ascii)</A></LI>
+<LI><A href="observations/tropical_cyclone/tc_to_obs.html">Tropical Cyclone ATCF reports </A> (ascii)</LI>
+<LI><A href="observations/tpw/tpw.html">Total Precipitable Water obs </A> (ascii)</LI>
<LI><A href="observations/var/littler_tf_dart.html">little-r data </A></LI>
<LI><A href="observations/var/rad_3dvar_to_dart.html">3DVAR radar data</A></LI>
<LI><A href="observations/var/var.html">var obs data</A></LI>
@@ -253,28 +255,28 @@
</P>
<UL style="list-style: none;">
-<LI><A href="models/cam/cam_to_dart.html">models/cam/cam_to_dart</A></LI>
-<LI><A href="models/cam/dart_to_cam.html">models/cam/dart_to_cam</A></LI>
-<LI><A href="models/CESM/cesm_to_dart.html">models/CESM/cesm_to_dart</A></LI>
-<LI><A href="models/CESM/dart_to_cesm.html">models/CESM/dart_to_cesm</A></LI>
-<LI><A href="models/clm/clm_to_dart.html">models/clm/clm_to_dart</A></LI>
-<LI><A href="models/clm/dart_to_clm.html">models/clm/dart_to_clm</A></LI>
-<LI><A href="models/MITgcm_ocean/create_ocean_obs.html">models/MITgcm_ocean/create_ocean_obs</A></LI>
-<LI><A href="models/MITgcm_ocean/trans_pv_sv.html">models/MITgcm_ocean/trans_pv_sv</A></LI>
-<LI><A href="models/MITgcm_ocean/trans_sv_pv.html">models/MITgcm_ocean/trans_sv_pv</A></LI>
-<LI><A href="models/mpas_atm/model_to_dart.html">models/mpas_atm/model_to_dart</A></LI>
-<LI><A href="models/mpas_ocn/model_to_dart.html">models/mpas_ocn/model_to_dart</A></LI>
-<LI><A href="models/NCOMMAS/dart_to_ncommas.html">models/NCOMMAS/dart_to_ncommas</A></LI>
-<LI><A href="models/NCOMMAS/ncommas_to_dart.html">models/NCOMMAS/ncommas_to_dart</A></LI>
-<LI><A href="models/noah/dart_to_noah.html">models/noah/dart_to_noah</A></LI>
-<LI><A href="models/noah/noah_to_dart.html">models/noah/noah_to_dart</A></LI>
-<LI><A href="models/POP/dart_to_pop.html">models/POP/dart_to_pop</A></LI>
-<LI><A href="models/POP/pop_to_dart.html">models/POP/pop_to_dart</A></LI>
-<LI><A href="models/wrf/shell_scripts/advance_model.html">models/wrf/shell_scripts/advance_model</A></LI>
-<LI><A href="models/wrf/WRF_DART_utilities/dart_to_wrf.html">models/wrf/WRF_DART_utilities/dart_to_wrf</A></LI>
-<LI><A href="models/wrf/WRF_DART_utilities/dart_to_wrf.html">models/wrf/WRF_DART_utilities/wrf_to_dart</A></LI>
-<LI><A href="models/wrf/WRF_DART_utilities/replace_wrf_fields.html">models/wrf/WRF_DART_utilities/replace_wrf_fields</A></LI>
-<LI><A href="models/wrf/WRF_DART_utilities/wrf_dart_obs_preprocess.html">program wrf_dart_obs_preprocess</A> - preprocess observations intended to be assimilated into WRF. Program has understanding of the WRF domain information.</LI>
+<LI>cam <A href="models/cam/cam_to_dart.html">cam_to_dart</A></LI>
+<LI>cam <A href="models/cam/dart_to_cam.html">dart_to_cam</A></LI>
+<LI>CESM <A href="models/CESM/cesm_to_dart.html">cesm_to_dart</A></LI>
+<LI>CESM <A href="models/CESM/dart_to_cesm.html">dart_to_cesm</A></LI>
+<LI>clm <A href="models/clm/clm_to_dart.html">clm_to_dart</A></LI>
+<LI>clm <A href="models/clm/dart_to_clm.html">dart_to_clm</A></LI>
+<LI>MITgcm_ocean <A href="models/MITgcm_ocean/create_ocean_obs.html">create_ocean_obs</A></LI>
+<LI>MITgcm_ocean <A href="models/MITgcm_ocean/trans_pv_sv.html">trans_pv_sv</A></LI>
+<LI>MITgcm_ocean <A href="models/MITgcm_ocean/trans_sv_pv.html">trans_sv_pv</A></LI>
+<LI>mpas_atm <A href="models/mpas_atm/model_to_dart.html">model_to_dart</A></LI>
+<LI>mpas_ocn <A href="models/mpas_ocn/model_to_dart.html">model_to_dart</A></LI>
+<LI>NCOMMAS <A href="models/NCOMMAS/dart_to_ncommas.html">dart_to_ncommas</A></LI>
+<LI>NCOMMAS <A href="models/NCOMMAS/ncommas_to_dart.html">ncommas_to_dart</A></LI>
+<LI>noah <A href="models/noah/dart_to_noah.html">dart_to_noah</A></LI>
+<LI>noah <A href="models/noah/noah_to_dart.html">noah_to_dart</A></LI>
+<LI>POP <A href="models/POP/dart_to_pop.html">dart_to_pop</A></LI>
+<LI>POP <A href="models/POP/pop_to_dart.html">pop_to_dart</A></LI>
+<LI>wrf <A href="models/wrf/shell_scripts/advance_model.html">advance_model</A></LI>
+<LI>wrf <A href="models/wrf/WRF_DART_utilities/dart_to_wrf.html">dart_to_wrf</A></LI>
+<LI>wrf <A href="models/wrf/WRF_DART_utilities/dart_to_wrf.html">wrf_to_dart</A></LI>
+<LI>wrf <A href="models/wrf/WRF_DART_utilities/replace_wrf_fields.html">replace_wrf_fields</A></LI>
+<LI>wrf <A href="models/wrf/WRF_DART_utilities/wrf_dart_obs_preprocess.html">wrf_dart_obs_preprocess</A> - preprocess observations intended to be assimilated into WRF. Program has understanding of the WRF domain information.</LI>
</UL>
<!--==================================================================-->
@@ -297,41 +299,41 @@
<UL style="list-style: none;">
<LI><A HREF="models/model_mod.html">Overview for all models</A></LI>
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+<LI><A HREF="models/dynamo/model_mod.f90">dynamo </A> (source)</LI>
+<LI><A HREF="models/forced_barot/model_mod.f90">forced_barot </A> (source)</LI>
+<LI><A HREF="models/forced_lorenz_96/model_mod.html">forced_lorenz_96 </A> (html)</LI>
+<LI><A HREF="models/gitm/model_mod.html">GITM </A> (html)</LI>
+<LI><A HREF="models/ikeda/model_mod.html">ikeda </A> (html)</LI>
+<LI><A HREF="models/lorenz_04/model_mod.html">Lorenz_04 </A> (html)</LI>
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+<LI><A HREF="models/lorenz_96/model_mod.html">Lorenz_96 </A> (html)</LI>
+<LI><A HREF="models/lorenz_96_2scale/model_mod.f90">Lorenz_96_2scale </A> (source)</LI>
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+<LI><A HREF="models/mpas_atm/model_mod.html">MPAS_atm </A> (html)</LI>
+<LI><A HREF="models/mpas_ocn/model_mod.html">MPAS_ocn </A> (html)</LI>
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+<LI><A HREF="models/simple_advection/model_mod.html">simple_advection </A> (html)</LI>
+<LI><A HREF="models/sqg/model_mod.html">SQG </A> (html)</LI>
+<LI><A HREF="models/tiegcm/model_mod.f90">TIEgcm </A> (source)</LI>
+<LI><A HREF="models/wrf/model_mod.html">WRF </A> (html)</LI>
</UL>
<!--==================================================================-->
@@ -345,50 +347,57 @@
'&' and terminating with a slash '/'.
-<P>Programs with namelists:</P>
+<P>Namelists for Programs:</P>
<UL style="list-style: none;">
+<LI><A HREF="utilities/closest_member_tool.html#Namelist">&closest_member_tool_nml</A></LI>
+<LI><A HREF="utilities/compare_states.html#Namelist">&compare_states_nml</A></LI>
<LI><A HREF="filter/filter.html#Namelist">&filter_nml</A></LI>
-<LI><A HREF="diagnostics/oned/obs_diag.html#Namelist">&obs_diag_nml (oned)</A></LI>
-<LI><A HREF="diagnostics/threed_sphere/obs_diag.html#Namelist">&obs_diag_nml (threed_sphere)</A></LI>
+<LI><A HREF="system_simulation/system_simulation.html#Namelist">&full_error_nml</A> (system simulation)</LI>
+<LI><A HREF="utilities/model_mod_check.html#Namelist">&model_mod_check_nml</A></LI>
<LI><A HREF="obs_sequence/obs_common_subset.html#Namelist">&obs_common_subset_nml</A></LI>
-<LI><A HREF="obs_sequence/obs_loop.nml">&obs_loop_nml (nml)</A></LI>
+<LI><A HREF="diagnostics/oned/obs_diag.html#Namelist">&obs_diag_nml</A> (oned)</LI>
+<LI><A HREF="diagnostics/threed_sphere/obs_diag.html#Namelist">&obs_diag_nml</A> (threed_sphere)</LI>
+<LI><A HREF="obs_sequence/obs_loop.nml">&obs_loop_nml</A></LI>
<LI><A HREF="obs_sequence/obs_selection.html#Namelist">&obs_selection_nml</A></LI>
<LI><A HREF="obs_sequence/obs_seq_coverage.html#Namelist">&obs_seq_coverage_nml</A></LI>
<LI><A HREF="obs_sequence/obs_seq_to_netcdf.html#Namelist">&obs_seq_to_netcdf_nml</A></LI>
<LI><A HREF="obs_sequence/obs_seq_verify.html#Namelist">&obs_seq_verify_nml</A></LI>
<LI><A HREF="obs_sequence/obs_sequence_tool.html#Namelist">&obs_sequence_tool_nml</A></LI>
-<LI><A HREF="observations/AIRS/AIRS.html#Namelist">observations/AIRS/&convert_airs_L2_nml</A></LI>
-<LI><A HREF="observations/Ameriflux/level4_to_obs.html#Namelist">observations/Ameriflux/&level4_to_obs_nml</A></LI>
+<LI><A HREF="perfect_model_obs/perfect_model_obs.html#Namelist">&perfect_model_obs_nml</A></LI>
+<LI><A HREF="preprocess/preprocess.html#Namelist">&preprocess_nml</A></LI>
+<LI><A HREF="utilities/restart_file_tool.html#Namelist">&restart_file_tool_nml</A></LI>
+</UL>
+
+<P>Namelists for Observation Conversion Programs:</P>
+
+<UL style="list-style: none;">
+<LI><A HREF="observations/AIRS/AIRS.html#Namelist">&convert_airs_L2_nml</A></LI>
+<LI><A HREF="observations/quikscat/QuikSCAT.html#Namelist">&convert_L2b_nml</A></LI>
+<LI><A HREF="observations/tpw/tpw.html#Namelist">&convert_tpw_nml</A></LI>
<LI><A HREF="observations/COSMOS/COSMOS_development.html#Namelist">&COSMOS_development_nml</A></LI>
<LI><A HREF="observations/COSMOS/COSMOS_to_obs.html#Namelist">&COSMOS_to_obs_nml</A></LI>
+<LI><A href="observations/gps/gps.html#Namelist">&convert_cosmic_gps_nml</A></LI>
+<LI><A HREF="observations/Ameriflux/level4_to_obs.html#Namelist">&level4_to_obs_nml</A></LI>
<LI><A HREF="observations/MIDAS/MIDAS_to_obs.html#Namelist">&MIDAS_to_obs_nml</A></LI>
-<LI><A HREF="observations/NCEP/ascii_to_obs/create_real_obs.html#Namelist">&create_real_obs_nml</A></LI>
-<LI><A HREF="observations/quikscat/QuikSCAT.html#Namelist">observations/quikscat/&convert_L2b_nml</A></LI>
-<LI><A HREF="observations/tpw/tpw.html#Namelist">&convert_tpw_nml</A></LI>
-<LI><A HREF="observations/var/rad_3dvar_to_dart.html#Namelist">observations/var/&rad_3dvar_to_dart_nml</A></LI>
+<LI><A href="observations/MODIS/MOD15A2_to_obs.html#Namelist">&MOD15A2_to_obs_nml</A></LI>
+<LI><A HREF="observations/NCEP/ascii_to_obs/create_real_obs.html#Namelist">&ncepobs_nml</A></LI>
+<LI><A href="observations/tropical_cyclone/tc_to_obs.html#Namelist">&tc_to_obs_nml</A></LI>
+<LI><A HREF="observations/var/rad_3dvar_to_dart.html#Namelist">&rad_3dvar_to_dart_nml</A></LI>
<LI><A HREF="observations/WOD/WOD.html#Namelist">&wod_to_obs_nml</A></LI>
-<LI><A href="observations/MODIS/MOD15A2_to_obs.html#Namelist">observations/MODIS/&MOD15A2_to_obs_nml</A></LI>
-<LI><A HREF="perfect_model_obs/perfect_model_obs.html#Namelist">&perfect_model_obs_nml</A></LI>
-<LI><A HREF="preprocess/preprocess.html#Namelist">&preprocess_nml</A></LI>
-<LI><A HREF="system_simulation/system_simulation.html#Namelist">system_simulation (&full_error_nml)</A></LI>
-<LI><A HREF="utilities/closest_member_tool.html#Namelist">&closest_member_tool_nml</A></LI>
-<LI><A HREF="utilities/compare_states.html#Namelist">&compare_states_nml</A></LI>
-<LI><A HREF="utilities/model_mod_check.html#Namelist">&model_mod_check_nml</A></LI>
-<LI><A HREF="utilities/restart_file_tool.html#Namelist">&restart_file_tool_nml</A></LI>
</UL>
-<P>Modules with namelists:</P>
+<P>Namelists for Modules:</P>
<UL style="list-style: none;">
<LI><A HREF="assim_model/assim_model_mod.html#Namelist">&assim_model_mod_nml</A></LI>
<LI><A HREF="assim_tools/assim_tools_mod.html#Namelist">&assim_tools_mod_nml</A></LI>
<LI><A HREF="cov_cutoff/cov_cutoff_mod.html#Namelist">&cov_cutoff_mod_nml</A></LI>
<LI><A HREF="ensemble_manager/ensemble_manager_mod.html#Namelist">&ensemble_manager_mod_nml</A></LI>
-<LI><A HREF="location/channel/location_mod.html#Namelist">channel/&location_mod_nml</A></LI>
-<LI><A HREF="location/column/location_mod.nml">column/&location_mod_nml</A></LI>
-<LI><A HREF="location/threed_cartesian/location_mod.html#Namelist">threed_cartesian/&location_mod_nml</A></LI>
-<LI><A HREF="location/threed_sphere/location_mod.html#Namelist">threed_sphere/&location_mod_nml</A></LI>
+<LI><A HREF="location/channel/location_mod.html#Namelist">&location_mod_nml</A> (channel)</LI>
+<LI><A HREF="location/column/location_mod.nml">&location_mod_nml</A> (column)</LI>
+<LI><A HREF="location/threed_cartesian/location_mod.html#Namelist">&location_mod_nml</A> (threed_cartesian)</LI>
+<LI><A HREF="location/threed_sphere/location_mod.html#Namelist">&location_mod_nml</A> (threed_sphere)</LI>
<LI><A HREF="mpi_utilities/mpi_utilities_mod.html#Namelist">&mpi_utilities_mod_nml</A></LI>
<LI><A HREF="obs_def/obs_def_gps_mod.html#Namelist">&obs_def_gps_mod_nml</A></LI>
<LI><A HREF="obs_def/obs_def_ocean_mod.nml">&obs_def_ocean_mod_nml</A></LI>
@@ -403,60 +412,60 @@
<LI><A HREF="utilities/utilities_mod.html#Namelist">&utilities_mod_nml</A></LI>
</UL>
-<P>Models with namelists:</P>
+<P>Namelists for Models:</P>
<UL style="list-style: none;">
-<LI><A HREF="models/9var/model_mod.nml#Namelist">9var/&model_nml</A></LI>
-<LI><A HREF="models/bgrid_solo/model_mod.nml#Namelist">bgrid_solo/&model_nml</A></LI>
-<LI><A HREF="models/cam/cam_to_dart.nml#Namelist">cam/&cam_to_dart_nml</A></LI>
-<LI><A HREF="models/cam/dart_to_cam.nml#Namelist">cam/&dart_to_cam_nml</A></LI>
-<LI><A HREF="models/cam/model_mod.nml#Namelist">cam/&model_nml</A></LI>
-<LI><A HREF="models/CESM/cesm_to_dart.nml#Namelist">CESM/&cesm_to_dart_nml</A></LI>
-<LI><A HREF="models/CESM/dart_to_cesm.nml#Namelist">CESM/&dart_to_cesm_nml</A></LI>
-<LI><A HREF="models/CESM/model_mod.nml#Namelist">CESM/&model_nml</A></LI>
-<LI><A HREF="models/clm/clm_to_dart.nml#Namelist">clm/&clm_to_dart_nml</A></LI>
-<LI><A HREF="models/clm/dart_to_clm.nml#Namelist">clm/&dart_to_clm_nml</A></LI>
-<LI><A HREF="models/clm/model_mod.nml#Namelist">clm/&model_nml</A></LI>
-<LI><A HREF="models/coamps/model_mod.nml#Namelist">coamps/&model_nml</A></LI>
-<LI><A HREF="models/coamps_nest/model_mod.nml#Namelist">coamps_nest/&model_nml</A></LI>
-<LI><A HREF="models/forced_lorenz_96/model_mod.nml#Namelist">forced_lorenz_96/&model_nml</A></LI>
-<LI><A HREF="models/ikeda/model_mod.nml#Namelist">ikeda/&model_nml</A></LI>
-<LI><A HREF="models/lorenz_04/model_mod.nml#Namelist">lorenz_04/&model_nml</A></LI>
-<LI><A HREF="models/lorenz_63/model_mod.nml#Namelist">lorenz_63/&model_nml</A></LI>
-<LI><A HREF="models/lorenz_84/model_mod.nml#Namelist">lorenz_84/&model_nml</A></LI>
-<LI><A HREF="models/lorenz_96/model_mod.nml#Namelist">lorenz_96/&model_nml</A></LI>
-<LI><A HREF="models/lorenz_96_2scale/model_mod.nml#Namelist">lorenz_96_2scale/&model_nml</A></LI>
-<LI><A HREF="models/MITgcm_annulus/model_mod.nml#Namelist">MITgcm_annulus/&model_nml</A></LI>
-<LI><A HREF="models/MITgcm_ocean/create_ocean_obs.nml#Namelist">MITgcm_ocean/&create_ocean_obs_nml</A></LI>
-<LI><A HREF="models/MITgcm_ocean/model_mod.nml#Namelist">MITgcm_ocean/&model_nml</A></LI>
-<LI><A HREF="models/mpas_atm/model_mod.nml#Namelist">mpas_atm/&model_nml</A></LI>
-<LI><A HREF="models/mpas_atm/model_to_dart.nml#Namelist">mpas_atm/&model_to_dart_nml</A></LI>
-<LI><A HREF="models/mpas_ocn/dart_to_model.nml#Namelist">mpas_ocn/&dart_to_model_nml</A></LI>
-<LI><A HREF="models/mpas_ocn/model_mod.nml#Namelist">mpas_ocn/&model_nml</A></LI>
-<LI><A HREF="models/mpas_ocn/model_to_dart.nml#Namelist">mpas_ocn/&model_to_dart_nml</A></LI>
-<LI><A HREF="models/NAAPS/dart_to_naaps.nml#Namelist">NAAPS/&dart_to_naaps_nml</A></LI>
-<LI><A HREF="models/NAAPS/model_mod.nml#Namelist">NAAPS/&model_nml</A></LI>
-<LI><A HREF="models/NAAPS/model_mod_check.nml#Namelist">NAAPS/&model_mod_check_nml</A></LI>
-<LI><A HREF="models/NAAPS/naaps_to_dart.nml#Namelist">NAAPS/&naaps_to_dart_nml</A></LI>
-<LI><A HREF="models/NCOMMAS/dart_to_ncommas.nml#Namelist">NCOMMAS/&dart_to_ncommas_nml</A></LI>
-<LI><A HREF="models/NCOMMAS/model_mod.nml#Namelist">NCOMMAS/&model_nml</A></LI>
-<LI><A HREF="models/NCOMMAS/ncommas_to_dart.nml#Namelist">NCOMMAS/&ncommas_to_dart_nml</A></LI>
-<LI><A HREF="models/NCOMMAS/work/ncommas_vars.nml#Namelist">NCOMMAS/work/&ncommas_vars_nml</A></LI>
-<LI><A HREF="models/noah/dart_to_noah.nml#Namelist">noah/&dart_to_noah_nml</A></LI>
-<LI><A HREF="models/noah/model_mod.nml#Namelist">noah/&model_nml</A></LI>
-<LI><A HREF="models/noah/noah_to_dart.nml#Namelist">noah/&noah_to_dart_nml</A></LI>
-<LI><A HREF="models/null_model/model_mod.nml#Namelist">null_model/&model_nml</A></LI>
-<LI><A HREF="models/POP/dart_to_pop.nml#Namelist">POP/&dart_to_pop_nml</A></LI>
-<LI><A HREF="models/POP/model_mod.nml#Namelist">POP/&model_nml</A></LI>
-<LI><A HREF="models/POP/pop_to_dart.nml#Namelist">POP/&pop_to_dart_nml</A></LI>
-<LI><A HREF="models/simple_advection/model_mod.nml#Namelist">simple_advection/&model_nml</A></LI>
-<LI><A HREF="models/sqg/model_mod.nml#Namelist">sqg/&model_nml</A></LI>
-<LI><A HREF="models/template/model_mod.nml#Namelist">template/&model_nml</A></LI>
-<LI><A HREF="models/wrf/model_mod.nml#Namelist">wrf/&model_nml</A></LI>
-<LI><A HREF="models/wrf/WRF_DART_utilities/dart_to_wrf.nml#Namelist">wrf/WRF_DART_utilities/&dart_to_wrf_nml</A></LI>
-<LI><A HREF="models/wrf/WRF_DART_utilities/replace_wrf_fields.nml#Namelist">wrf/WRF_DART_utilities/&replace_wrf_fields_nml</A></LI>
-<LI><A HREF="models/wrf/WRF_DART_utilities/wrf_dart_obs_preprocess.nml#Namelist">wrf/WRF_DART_utilities/&wrf_dart_obs_preprocess_nml</A></LI>
-<LI><A HREF="models/wrf/WRF_DART_utilities/wrf_to_dart.nml#Namelist">wrf/WRF_DART_utilities/&wrf_to_dart_nml</A></LI>
+<LI>9var <A HREF="models/9var/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>bgrid_solo <A HREF="models/bgrid_solo/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>cam <A HREF="models/cam/cam_to_dart.nml#Namelist">&cam_to_dart_nml</A></LI>
+<LI>cam <A HREF="models/cam/dart_to_cam.nml#Namelist">&dart_to_cam_nml</A></LI>
+<LI>cam <A HREF="models/cam/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>CESM <A HREF="models/CESM/cesm_to_dart.nml#Namelist">&cesm_to_dart_nml</A></LI>
+<LI>CESM <A HREF="models/CESM/dart_to_cesm.nml#Namelist">&dart_to_cesm_nml</A></LI>
+<LI>CESM <A HREF="models/CESM/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>clm <A HREF="models/clm/clm_to_dart.nml#Namelist">&clm_to_dart_nml</A></LI>
+<LI>clm <A HREF="models/clm/dart_to_clm.nml#Namelist">&dart_to_clm_nml</A></LI>
+<LI>clm <A HREF="models/clm/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>coamps <A HREF="models/coamps/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>coamps_nest <A HREF="models/coamps_nest/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>forced_lorenz_96 <A HREF="models/forced_lorenz_96/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>ikeda <A HREF="models/ikeda/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>lorenz_04 <A HREF="models/lorenz_04/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>lorenz_63 <A HREF="models/lorenz_63/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>lorenz_84 <A HREF="models/lorenz_84/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>lorenz_96 <A HREF="models/lorenz_96/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>lorenz_92_2scale <A HREF="models/lorenz_96_2scale/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>MITgcm_annulus <A HREF="models/MITgcm_annulus/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>MITgcm_ocean <A HREF="models/MITgcm_ocean/create_ocean_obs.nml#Namelist">&create_ocean_obs_nml</A></LI>
+<LI>MITgcm_ocean <A HREF="models/MITgcm_ocean/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>mpas_atm <A HREF="models/mpas_atm/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>mpas_atm <A HREF="models/mpas_atm/model_to_dart.nml#Namelist">&model_to_dart_nml</A></LI>
+<LI>mpas_ocn <A HREF="models/mpas_ocn/dart_to_model.nml#Namelist">&dart_to_model_nml</A></LI>
+<LI>mpas_ocn <A HREF="models/mpas_ocn/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>mpas_ocn <A HREF="models/mpas_ocn/model_to_dart.nml#Namelist">&model_to_dart_nml</A></LI>
+<LI>NAAPS <A HREF="models/NAAPS/dart_to_naaps.nml#Namelist">&dart_to_naaps_nml</A></LI>
+<LI>NAAPS <A HREF="models/NAAPS/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>NAAPS <A HREF="models/NAAPS/model_mod_check.nml#Namelist">&model_mod_check_nml</A></LI>
+<LI>NAAPS <A HREF="models/NAAPS/naaps_to_dart.nml#Namelist">&naaps_to_dart_nml</A></LI>
+<LI>NCOMMAS <A HREF="models/NCOMMAS/dart_to_ncommas.nml#Namelist">&dart_to_ncommas_nml</A></LI>
+<LI>NCOMMAS <A HREF="models/NCOMMAS/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>NCOMMAS <A HREF="models/NCOMMAS/ncommas_to_dart.nml#Namelist">&ncommas_to_dart_nml</A></LI>
+<LI>NCOMMAS <A HREF="models/NCOMMAS/work/ncommas_vars.nml#Namelist">&ncommas_vars_nml</A></LI>
+<LI>noah <A HREF="models/noah/dart_to_noah.nml#Namelist">&dart_to_noah_nml</A></LI>
+<LI>noah <A HREF="models/noah/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>null_model <A HREF="models/noah/noah_to_dart.nml#Namelist">&noah_to_dart_nml</A></LI>
+<LI>null_model <A HREF="models/null_model/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>POP <A HREF="models/POP/dart_to_pop.nml#Namelist">&dart_to_pop_nml</A></LI>
+<LI>POP <A HREF="models/POP/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>POP <A HREF="models/POP/pop_to_dart.nml#Namelist">&pop_to_dart_nml</A></LI>
+<LI>simple_advection <A HREF="models/simple_advection/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>sqg <A HREF="models/sqg/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>template <A HREF="models/template/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>wrf <A HREF="models/wrf/model_mod.nml#Namelist">&model_nml</A></LI>
+<LI>wrf <A HREF="models/wrf/WRF_DART_utilities/dart_to_wrf.nml#Namelist">&dart_to_wrf_nml</A></LI>
+<LI>wrf <A HREF="models/wrf/WRF_DART_utilities/replace_wrf_fields.nml#Namelist">&replace_wrf_fields_nml</A></LI>
+<LI>wrf <A HREF="models/wrf/WRF_DART_utilities/wrf_dart_obs_preprocess.nml#Namelist">&wrf_dart_obs_preprocess_nml</A></LI>
+<LI>wrf <A HREF="models/wrf/WRF_DART_utilities/wrf_to_dart.nml#Namelist">&wrf_to_dart_nml</A></LI>
</UL>
<!--==================================================================-->
@@ -564,82 +573,82 @@
<LI><A href="location/threed_cartesian/location_mod.html">location/threed_cartesian/location_mod</A></LI>
<LI><A href="location/threed_sphere/location_mod.html">location/threed_sphere/location_mod</A></LI>
<LI><A href="mkmf/mkmf.html">mkmf/mkmf</A></LI>
-<LI><A href="models/9var/model_mod.f90">models/9var/model_mod (source)</A></LI>
-<LI><A href="models/9var/model_mod.html">models/9var/model_mod (html)</A></LI>
+<LI><A href="models/9var/model_mod.f90">models/9var/model_mod </A> (source)</LI>
+<LI><A href="models/9var/model_mod.html">models/9var/model_mod </A> (html)</LI>
<LI><A href="models/CESM/cesm_to_dart.html">models/CESM/cesm_to_dart</A></LI>
<LI><A href="models/CESM/dart_to_cesm.html">models/CESM/dart_to_cesm</A></LI>
-<LI><A href="models/CESM/model_mod.f90">models/CESM/model_mod (source)</A></LI>
-<LI><A href="models/CESM/model_mod.html">models/CESM/model_mod (html)</A></LI>
-<LI><A href="models/MITgcm_annulus/model_mod.f90">models/MITgcm_annulus/model_mod (source)</A></LI>
+<LI><A href="models/CESM/model_mod.f90">models/CESM/model_mod </A> (source)</LI>
+<LI><A href="models/CESM/model_mod.html">models/CESM/model_mod </A> (html)</LI>
+<LI><A href="models/MITgcm_annulus/model_mod.f90">models/MITgcm_annulus/model_mod </A> (source)</LI>
<LI><A href="models/MITgcm_ocean/create_ocean_obs.html">models/MITgcm_ocean/create_ocean_obs</A></LI>
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@@ Diff output truncated at 40000 characters. @@
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