[Dart-dev] [6685] DART/trunk/models: update the outlier_threshold for lorenz 96, to make it -1 again;

nancy at ucar.edu nancy at ucar.edu
Tue Dec 17 16:46:53 MST 2013


Revision: 6685
Author:   nancy
Date:     2013-12-17 16:46:52 -0700 (Tue, 17 Dec 2013)
Log Message:
-----------
update the outlier_threshold for lorenz 96, to make it -1 again;
and for several of the larger models which generally use real
observations, set it to 3.0 as the suggested default.

Modified Paths:
--------------
    DART/trunk/models/MITgcm_ocean/work/input.nml
    DART/trunk/models/NAAPS/work/input.nml
    DART/trunk/models/clm/work/input.nml
    DART/trunk/models/lorenz_96/work/input.nml
    DART/trunk/models/lorenz_96/work/input.workshop.nml
    DART/trunk/models/mpas_atm/work/input.nml
    DART/trunk/models/mpas_ocn/work/input.nml
    DART/trunk/models/noah/work/input.nml
    DART/trunk/models/rose/work/input.nml
    DART/trunk/models/tiegcm/work/input.nml
    DART/trunk/models/wrf/work/input.nml

-------------- next part --------------
Modified: DART/trunk/models/MITgcm_ocean/work/input.nml
===================================================================
--- DART/trunk/models/MITgcm_ocean/work/input.nml	2013-12-17 18:57:07 UTC (rev 6684)
+++ DART/trunk/models/MITgcm_ocean/work/input.nml	2013-12-17 23:46:52 UTC (rev 6685)
@@ -42,7 +42,7 @@
    output_interval          = 1,
    num_groups               = 1,
    input_qc_threshold       =  3.0,
-   outlier_threshold        = -1.0,
+   outlier_threshold        =  3.0,
    output_forward_op_errors = .false.,
    output_timestamps        = .false.,
    output_inflation         = .true.,

Modified: DART/trunk/models/NAAPS/work/input.nml
===================================================================
--- DART/trunk/models/NAAPS/work/input.nml	2013-12-17 18:57:07 UTC (rev 6684)
+++ DART/trunk/models/NAAPS/work/input.nml	2013-12-17 23:46:52 UTC (rev 6685)
@@ -157,7 +157,7 @@
    output_interval          = 1,
    num_groups               = 1,
    input_qc_threshold       =  3.0,
-   outlier_threshold        = -1.0,
+   outlier_threshold        =  3.0,
    output_forward_op_errors = .false.,
    output_restart_mean      = .false.,
    output_timestamps        = .false.,

Modified: DART/trunk/models/clm/work/input.nml
===================================================================
--- DART/trunk/models/clm/work/input.nml	2013-12-17 18:57:07 UTC (rev 6684)
+++ DART/trunk/models/clm/work/input.nml	2013-12-17 23:46:52 UTC (rev 6685)
@@ -42,8 +42,8 @@
    num_output_obs_members   = 20,
    output_interval          = 1,
    num_groups               = 1,
-   input_qc_threshold       =  1.0,
-   outlier_threshold        =  -1.0,
+   input_qc_threshold       = 1.0,
+   outlier_threshold        = 3.0,
    output_forward_op_errors = .false.,
    output_timestamps        = .false.,
    output_inflation         = .true.,

Modified: DART/trunk/models/lorenz_96/work/input.nml
===================================================================
--- DART/trunk/models/lorenz_96/work/input.nml	2013-12-17 18:57:07 UTC (rev 6684)
+++ DART/trunk/models/lorenz_96/work/input.nml	2013-12-17 23:46:52 UTC (rev 6685)
@@ -42,7 +42,7 @@
    output_interval          = 1,
    num_groups               = 1,
    input_qc_threshold       =  3.0,
-   outlier_threshold        =  3.0,
+   outlier_threshold        = -1.0,
    enable_special_outlier_code = .false.,
    output_forward_op_errors = .false.,
    output_inflation         = .true.,
@@ -78,10 +78,6 @@
    single_restart_file_in  = .true.,
    single_restart_file_out = .true.,
    perturbation_amplitude  = 0.2,
-   flag_unneeded_transposes = .true.
-   layout = 1,
-   communication_configuration = 1,
-   debug = .false.,
    /
 
 &assim_tools_nml
@@ -143,7 +139,7 @@
    /
 
 &preprocess_nml
-          overwrite_output = .true.
+          overwrite_output = .true.,
     input_obs_def_mod_file = '../../../obs_def/DEFAULT_obs_def_mod.F90',
    output_obs_def_mod_file = '../../../obs_def/obs_def_mod.f90',
    input_obs_kind_mod_file = '../../../obs_kind/DEFAULT_obs_kind_mod.F90',

Modified: DART/trunk/models/lorenz_96/work/input.workshop.nml
===================================================================
--- DART/trunk/models/lorenz_96/work/input.workshop.nml	2013-12-17 18:57:07 UTC (rev 6684)
+++ DART/trunk/models/lorenz_96/work/input.workshop.nml	2013-12-17 23:46:52 UTC (rev 6685)
@@ -13,7 +13,7 @@
    restart_out_file_name    = "perfect_restart",
    obs_seq_in_file_name     = "obs_seq.in",
    obs_seq_out_file_name    = "obs_seq.out",
-   adv_ens_command          = "./advance_model.csh",
+   adv_ens_command          = "../shell_scripts/advance_model.csh",
    trace_execution          = .false.,
    output_timestamps        = .false.,
    print_every_nth_obs      = -1,
@@ -23,7 +23,7 @@
 
 &filter_nml
    async                    = 0,
-   adv_ens_command          = "./advance_model.csh",
+   adv_ens_command          = "../shell_scripts/advance_model.csh",
    ens_size                 = 20,
    start_from_restart       = .true.,
    output_restart           = .true.,
@@ -43,6 +43,7 @@
    num_groups               = 1,
    input_qc_threshold       =  3.0,
    outlier_threshold        = -1.0,
+   enable_special_outlier_code = .false.,
    output_forward_op_errors = .false.,
    output_inflation         = .true.,
    output_timestamps        = .false.,
@@ -168,9 +169,9 @@
    /
 
 &obs_sequence_tool_nml
-   filename_seq      = 'obs_seq.final',
+   filename_seq      = 'obs1.out', 'obs2.out',
    filename_seq_list = '',
-   filename_out      = 'obs_seq.processed',
+   filename_out      = 'obs_seq.combined',
    first_obs_days    = -1,
    first_obs_seconds = -1,
    last_obs_days     = -1,
@@ -206,7 +207,7 @@
    obs_sequence_name     = 'obs_seq.final',
    bin_width_days        = -1,
    bin_width_seconds     = -1,
-   init_skip_days        = 0,
+   init_skip_days        = 0, 
    init_skip_seconds     = 0,
    Nregions              = 3,
    trusted_obs           = 'null',

Modified: DART/trunk/models/mpas_atm/work/input.nml
===================================================================
--- DART/trunk/models/mpas_atm/work/input.nml	2013-12-17 18:57:07 UTC (rev 6684)
+++ DART/trunk/models/mpas_atm/work/input.nml	2013-12-17 23:46:52 UTC (rev 6685)
@@ -42,7 +42,7 @@
    output_interval          = 1,
    num_groups               = 1,
    input_qc_threshold       =  3.0,
-   outlier_threshold        = -1.0,
+   outlier_threshold        =  3.0,
    output_forward_op_errors = .true.,
    output_timestamps        = .false.,
    output_inflation         = .true.,

Modified: DART/trunk/models/mpas_ocn/work/input.nml
===================================================================
--- DART/trunk/models/mpas_ocn/work/input.nml	2013-12-17 18:57:07 UTC (rev 6684)
+++ DART/trunk/models/mpas_ocn/work/input.nml	2013-12-17 23:46:52 UTC (rev 6685)
@@ -42,7 +42,7 @@
    output_interval          = 1,
    num_groups               = 1,
    input_qc_threshold       =  3.0,
-   outlier_threshold        = -1.0,
+   outlier_threshold        =  3.0,
    output_forward_op_errors = .false.,
    output_timestamps        = .false.,
    output_inflation         = .true.,

Modified: DART/trunk/models/noah/work/input.nml
===================================================================
--- DART/trunk/models/noah/work/input.nml	2013-12-17 18:57:07 UTC (rev 6684)
+++ DART/trunk/models/noah/work/input.nml	2013-12-17 23:46:52 UTC (rev 6685)
@@ -73,7 +73,7 @@
    output_interval          = 1,
    num_groups               = 1,
    input_qc_threshold       =  3.0,
-   outlier_threshold        = -1.0,
+   outlier_threshold        =  3.0,
    output_forward_op_errors = .false.,
    output_timestamps        = .false.,
    output_inflation         = .true.,

Modified: DART/trunk/models/rose/work/input.nml
===================================================================
--- DART/trunk/models/rose/work/input.nml	2013-12-17 18:57:07 UTC (rev 6684)
+++ DART/trunk/models/rose/work/input.nml	2013-12-17 23:46:52 UTC (rev 6685)
@@ -42,7 +42,7 @@
    output_interval          = 1,
    num_groups               = 1,
    input_qc_threshold       =  3.0,
-   outlier_threshold        = -1.0,
+   outlier_threshold        =  3.0,
    output_forward_op_errors = .false.,
    output_timestamps        = .false.,
    output_inflation         = .true.,

Modified: DART/trunk/models/tiegcm/work/input.nml
===================================================================
--- DART/trunk/models/tiegcm/work/input.nml	2013-12-17 18:57:07 UTC (rev 6684)
+++ DART/trunk/models/tiegcm/work/input.nml	2013-12-17 23:46:52 UTC (rev 6685)
@@ -42,7 +42,7 @@
    output_interval          = 1,
    num_groups               = 1,
    input_qc_threshold       =  3.0,
-   outlier_threshold        = -1.0,
+   outlier_threshold        =  3.0,
    output_forward_op_errors = .false.,
    output_timestamps        = .false.,
    output_inflation         = .true.,

Modified: DART/trunk/models/wrf/work/input.nml
===================================================================
--- DART/trunk/models/wrf/work/input.nml	2013-12-17 18:57:07 UTC (rev 6684)
+++ DART/trunk/models/wrf/work/input.nml	2013-12-17 23:46:52 UTC (rev 6685)
@@ -42,7 +42,7 @@
    output_interval          = 1,
    num_groups               = 1,
    input_qc_threshold       =  3.0,
-   outlier_threshold        = -1.0,
+   outlier_threshold        =  3.0,
    output_forward_op_errors = .false.,
    output_timestamps        = .false.,
    output_inflation         = .true.,


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