[Dart-dev] [5909] DART/branches/development/observations/COSMOS/COSMOS_to_obs.f90: Renaming Rafael's "COSMOS_to_obs" routines to a more accurate name.

nancy at ucar.edu nancy at ucar.edu
Tue Oct 30 13:28:48 MDT 2012


Revision: 5909
Author:   thoar
Date:     2012-10-30 13:28:47 -0600 (Tue, 30 Oct 2012)
Log Message:
-----------
Renaming Rafael's "COSMOS_to_obs" routines to a more accurate name.
The COSMOS_level2_to_obs routines are getting renamed shortly ... to 
COSMOS_to_obs.  It will then be clear which set of routines we are
advocating.

Removed Paths:
-------------
    DART/branches/development/observations/COSMOS/COSMOS_to_obs.f90

-------------- next part --------------
Deleted: DART/branches/development/observations/COSMOS/COSMOS_to_obs.f90
===================================================================
--- DART/branches/development/observations/COSMOS/COSMOS_to_obs.f90	2012-10-30 19:27:56 UTC (rev 5908)
+++ DART/branches/development/observations/COSMOS/COSMOS_to_obs.f90	2012-10-30 19:28:47 UTC (rev 5909)
@@ -1,605 +0,0 @@
-! DART software - Copyright 2004 - 2011 UCAR. This open source software is
-! provided by UCAR, "as is", without charge, subject to all terms of use at
-! http://www.image.ucar.edu/DAReS/DART/DART_download
-
-program COSMOS_to_obs
-
-! <next few lines under version control, do not edit>
-! $URL$
-! $Id$
-! $Revision$
-! $Date$
-
-!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
-!
-!   COSMOS_to_obs - a program that only needs minor customization to read
-!      in a text-based, whitespace-separated dataset.
-!
-!     original 3 May       2012   Tim Hoar       NCAR/IMAGe
-!     modified 6 September 2012   Rafael Rosolem University of Arizona 
-!     modified 10 October  2012   Tim Hoar
-!        * include site-specific metadata in obs sequence 
-!
-! QC flags are defined as: 0 = BEST     (corrected for water vapor)
-!                          1 = OK       (NOT corrected for water vapor)
-!
-!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
-
-use          types_mod, only : r8, MISSING_R8, metadatalength
-
-use      utilities_mod, only : initialize_utilities, finalize_utilities, &
-                               register_module, error_handler, E_MSG, E_ERR, &
-                               open_file, close_file, do_nml_file, do_nml_term, &
-                               check_namelist_read, find_namelist_in_file, &
-                               nmlfileunit, file_exist, nc_check, to_upper, &
-                               find_textfile_dims
-
-use   time_manager_mod, only : time_type, set_calendar_type, GREGORIAN, &
-                               set_date, set_time, get_time, print_time, &
-                               print_date, operator(-), operator(+), operator(>), &
-                               operator(<), operator(==), operator(<=), operator(>=)
-
-use       location_mod, only : location_type, set_location, VERTISSURFACE
-
-use   obs_sequence_mod, only : obs_sequence_type, obs_type, read_obs_seq, &
-                               static_init_obs_sequence, init_obs, write_obs_seq, &
-                               init_obs_sequence, get_num_obs, set_obs_def, &
-                               set_copy_meta_data, set_qc_meta_data, &
-                               set_obs_values, set_qc
-
-use        obs_def_mod, only : obs_def_type, set_obs_def_kind, &
-                               set_obs_def_location, set_obs_def_time, &
-                               set_obs_def_error_variance, set_obs_def_key
-
-use  obs_utilities_mod, only : add_obs_to_seq
-
-use obs_def_COSMOS_mod, only : set_cosmos_metadata
-
-use       obs_kind_mod, only : COSMOS_NEUTRON_INTENSITY
-
-use typesizes
-use netcdf
-
-implicit none
-
-!-----------------------------------------------------------------------
-! version controlled file description for error handling, do not edit
-!-----------------------------------------------------------------------
-
-character(len=128), parameter :: &
-   source   = "$URL$", &
-   revision = "$Revision$", &
-   revdate  = "$Date$"
-
-!-----------------------------------------------------------------------
-! Namelist with default values
-!-----------------------------------------------------------------------
-
-character(len=256) :: site_metadata_file = 'COSMIC_parlist.nc'
-character(len=128) :: text_input_file = 'textdata.input'
-character(len=128) :: obs_out_file    = 'obs_seq.out'
-character(len=128) :: sitename        = 'missing'
-integer            :: year
-real(r8)           :: maxgoodqc       = 3
-logical            :: verbose         = .false.
-
-namelist /COSMOS_to_obs_nml/ site_metadata_file, text_input_file, &
-   obs_out_file, sitename, year, maxgoodqc, verbose
-
-!-----------------------------------------------------------------------
-! globally-scoped variables
-!-----------------------------------------------------------------------
-
-character(len=256)      :: input_line, string1, string2, string3
-integer                 :: iline
-logical                 :: first_obs
-integer                 :: oday, osec, rcio, iunit
-integer                 :: num_copies, num_qc, max_obs
-real(r8)                :: oerr, qc
-type(obs_sequence_type) :: obs_seq
-type(obs_type)          :: obs, prev_obs
-type(time_type)         :: prev_time
-
-! The cosmosdata type holds all the information from the text file
-! from the COSMOS instrument. This file format is known best to Rafael.
-! The files using this format are not generally available to the public.
-
-type cosmosdata
-  type(time_type)   :: time_obs
-  character(len=20) :: monthstring = 'month'
-  character(len=20) :: daystring   = 'day'
-  character(len=20) :: hourstring  = 'hour'
-  character(len=20) :: doystring   = 'doy'
-  character(len=20) :: neutronstring    = 'neutron_fluxAVE'
-  character(len=20) :: neutronstdstring = 'neutron_fluxSTD'
-  character(len=20) :: neutronQCstring  = 'neutron_fluxQC'
-  integer  :: monthindex
-  integer  :: dayindex
-  integer  :: hourindex
-  integer  :: doyindex
-  integer  :: neutronindex
-  integer  :: neutronstdindex
-  integer  :: neutronQCindex
-  integer  :: month
-  integer  :: day
-  real(r8) :: hour
-  real(r8) :: doy
-  real(r8) :: neutron
-  real(r8) :: neutronstd
-  integer  :: neutronQC
-end type cosmosdata
-
-type(cosmosdata) :: cosmos ! we only need one of these.
-
-! The site_metadata type holds all the site-specific information
-
-type site_metadata
-   character(len=metadatalength) :: sitename
-   type(location_type) :: location
-   real(r8)            :: latitude
-   real(r8)            :: longitude
-   real(r8)            :: elevation
-   real(r8)            :: bd         ! Dry Soil Bulk Density [  g / cm^3]
-   real(r8)            :: lattwat    ! Lattice Water Content [M^3 /  M^3]
-   real(r8)            :: N          ! High Energy Neutron Intensity
-   real(r8)            :: alpha      ! Ratio of Fast Neutron Creation Factor
-   real(r8)            :: L1         ! High Energy   Soil Attenuation Length
-   real(r8)            :: L2         ! High Energy  Water Attenuation Length
-   real(r8)            :: L3         ! Fast Neutron  Soil Attenuation Length
-   real(r8)            :: L4         ! Fast Neutron Water Attenuation Length
-end type site_metadata
-
-type(site_metadata), allocatable, dimension(:) :: cosmos_metadata
-integer  :: nSites, siteIndx, obsindx
-real(r8) :: bd, lattwat, N, alpha, L1, L2, L3, L4   
-
-!-----------------------------------------------------------------------
-! start of executable code
-!-----------------------------------------------------------------------
-
-call initialize_utilities('COSMOS_to_obs')
-
-! Print module information to log file and stdout.
-call register_module(source, revision, revdate)
-
-! Read the namelist entry
-call find_namelist_in_file("input.nml", "COSMOS_to_obs_nml", iunit)
-read(iunit, nml = COSMOS_to_obs_nml, iostat = rcio)
-call check_namelist_read(iunit, rcio, "COSMOS_to_obs_nml")
-
-! Record the namelist values used for the run ...
-if (do_nml_file()) write(nmlfileunit, nml=COSMOS_to_obs_nml)
-if (do_nml_term()) write(     *     , nml=COSMOS_to_obs_nml)
-
-! time setup
-call set_calendar_type(GREGORIAN)
-prev_time = set_time(0, 0)
-
-! Read the COSMOS metadata/parameters for each site.
-! These will be added to the metadata for neutron intensity observations.
-nSites   = read_cosmos_metadata(site_metadata_file)
-siteIndx = find_site_index(sitename)
-bd       = cosmos_metadata(siteIndx)%bd
-lattwat  = cosmos_metadata(siteIndx)%lattwat
-N        = cosmos_metadata(siteIndx)%N
-alpha    = cosmos_metadata(siteIndx)%alpha
-L1       = cosmos_metadata(siteIndx)%L1
-L2       = cosmos_metadata(siteIndx)%L2
-L3       = cosmos_metadata(siteIndx)%L3
-L4       = cosmos_metadata(siteIndx)%L4
-
-if (verbose) print *, 'COSMOS site located at lat, lon, elev  =', &
-                       cosmos_metadata(siteIndx)%latitude, &
-                       cosmos_metadata(siteIndx)%longitude, &
-                       cosmos_metadata(siteIndx)%elevation
-
-! We need to know the maximum number of observations in the input file.
-! Each line has info for a single observation we want (COSMOS neutron counts).
-! Each observation in this series will have a single
-! observation value, its standard deviation, and a quality control flag.  
-! Initialize two empty observations - one to track location
-! in observation sequence - the other is for the new observation.
-
-call find_textfile_dims(text_input_file, max_obs)
-
-iunit = open_file(text_input_file, 'formatted', 'read')
-if (verbose) print *, 'opened input file ' // trim(text_input_file)
-
-num_copies = 1
-num_qc     = 1
-first_obs  = .true.
-
-call static_init_obs_sequence()
-call init_obs(        obs,      num_copies, num_qc)
-call init_obs(        prev_obs, num_copies, num_qc)
-call init_obs_sequence(obs_seq, num_copies, num_qc, max_obs)
-
-! the first one needs to contain the string 'observation' and the
-! second needs the string 'QC'.
-call set_copy_meta_data(obs_seq, 1, 'observation')
-call set_qc_meta_data(  obs_seq, 1, 'COSMOS QC')
-
-! The first line describes all the fields ... column headers, if you will
-call decode_header(iunit)
-
-obsloop: do iline = 2,max_obs
-
-   ! read in entire text line into a buffer
-   read(iunit,'(A)',iostat=rcio) input_line
-   if (rcio < 0) exit obsloop
-   if (rcio > 0) then
-      write (string1,'(''Cannot read (error '',i3,'') line '',i8,'' in '',A)') &
-                    rcio, iline, trim(text_input_file)
-      call error_handler(E_ERR,'main', string1, source, revision, revdate)
-   endif
-
-   ! parse the line into the cosmos structure (including the observation time)
-   call stringparse(input_line, iline)
-
-   if (iline <= 2) then
-      write(*,*)''
-      write(*,*)'Check of the first observation: (column,string,value)'
-      write(*,*)cosmos%monthindex      , cosmos%monthstring       , cosmos%month
-      write(*,*)cosmos%dayindex        , cosmos%daystring         , cosmos%day
-      write(*,*)cosmos%hourindex       , cosmos%hourstring        , cosmos%hour
-      write(*,*)cosmos%doyindex        , cosmos%doystring         , cosmos%doy
-      write(*,*)cosmos%neutronindex    , cosmos%neutronstring     , cosmos%neutron
-      write(*,*)cosmos%neutronstdindex , cosmos%neutronstdstring  , cosmos%neutronstd
-      write(*,*)cosmos%neutronQCindex  , cosmos%neutronQCstring   , cosmos%neutronQC
-      call print_date(cosmos%time_obs, 'observation date is')
-      call print_time(cosmos%time_obs, 'observation time is')
-   end if
-
-   if (verbose) call print_date(cosmos%time_obs, 'obs time is')
-
-   call get_time(cosmos%time_obs, osec, oday)
-
-   ! make an obs derived type, and then add it to the sequence
-   ! If the QC value is good, use the observation.
-   ! Increasingly larger QC values are more questionable quality data.
-   ! Quality Control Flags by Rafael Rosolem (rosolem at email.arizona.edu)
-   ! QC flags define as: 0 = BEST     (corrected for water vapor)
-   !                     1 = OK       (NOT corrected for water vapor)
-   !                     2 = BAD      (not reliable/consistent)
-   !                     3 = MISSING  (missing data, i.e. -9999)
-
-   if (cosmos%neutronQC <= maxgoodqc) then   ! COSMOS neutron counts
-      oerr = cosmos%neutronstd
-      qc   = real(cosmos%neutronQC,r8)
-
-      call set_cosmos_metadata(obsindx, bd, lattwat, N, alpha, L1, L2, L3, L4) 
-
-      call create_3d_obs(cosmos_metadata(siteIndx)%latitude, &
-                         cosmos_metadata(siteIndx)%longitude, 0.0_r8, VERTISSURFACE, &
-           cosmos%neutron, COSMOS_NEUTRON_INTENSITY, oerr, oday, osec, qc, obsindx, obs)
-
-      call add_obs_to_seq(obs_seq, obs, cosmos%time_obs, prev_obs, prev_time, first_obs)
-   endif
-
-end do obsloop
-
-! if we added any obs to the sequence, write it out to a file now.
-if ( get_num_obs(obs_seq) > 0 ) then
-   if (verbose) print *, 'writing obs_seq, obs_count = ', get_num_obs(obs_seq)
-   call write_obs_seq(obs_seq, obs_out_file)
-endif
-
-! end of main program
-call finalize_utilities()
-
-contains
-
-!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
-!
-!   create_3d_obs - subroutine that is used to create an observation
-!                   type from observation data.  
-!
-!   NOTE: assumes the code is using the threed_sphere locations module, 
-!         that the observation has a single data value and a single
-!         qc value.
-!
-!    lat   - latitude of observation
-!    lon   - longitude of observation
-!    vval  - vertical coordinate
-!    vkind - kind of vertical coordinate (pressure, level, etc)
-!    obsv  - observation value
-!    okind - observation kind
-!    oerr  - observation error
-!    day   - gregorian day
-!    sec   - gregorian second
-!    qc    - quality control value
-!    key   - index to metadata in obs_def_COSMOS_mod arrays
-!    obs   - observation type
-!
-!    extended from the observations/utilities/obs_utilities_mod.f90 v 5601
-!    to support the extra metadata -- TJH
-!
-!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
-subroutine create_3d_obs(lat, lon, vval, vkind, obsv, okind, oerr, day, sec, qc, key, obs)
-integer,        intent(in)    :: okind, vkind, day, sec
-real(r8),       intent(in)    :: lat, lon, vval, obsv, oerr, qc
-integer,        intent(in)    :: key
-type(obs_type), intent(inout) :: obs
-
-real(r8)              :: obs_val(1), qc_val(1)
-type(obs_def_type)    :: obs_def
-
-call set_obs_def_location(obs_def, set_location(lon, lat, vval, vkind))
-call set_obs_def_kind(obs_def, okind)
-call set_obs_def_time(obs_def, set_time(sec, day))
-call set_obs_def_error_variance(obs_def, oerr * oerr)
-call set_obs_def_key(obs_def, key)
-call set_obs_def(obs, obs_def)
-
-obs_val(1) = obsv
-call set_obs_values(obs, obs_val)
-qc_val(1)  = qc
-call set_qc(obs, qc_val)
-
-end subroutine create_3d_obs
-
-
-
-
-subroutine decode_header(iunit)
-! Reads the first line of the header and parses the information.
-! FIXME ... decode the header ... do not assume ...
-integer, intent(in) :: iunit
-
-read(iunit,'(A)',iostat=rcio) input_line
-if (rcio /= 0) then
-  write(string1,*)'Cannot parse header. Begins <',trim(input_line(1:40)),'>'
-  call error_handler(E_ERR,'decode_header',string1, source, revision, revdate)
-endif
-
-call error_handler(E_MSG,'decode_header','hardcoding values for now ... dangerous', &
-                     source, revision, revdate)
-
-cosmos%monthindex      = 1
-cosmos%dayindex        = 2
-cosmos%hourindex       = 3
-cosmos%doyindex        = 4
-cosmos%neutronindex    = 5
-cosmos%neutronstdindex = 6
-cosmos%neutronQCindex  = 7
-
-end subroutine decode_header
-
-
-
-subroutine stringparse(str1,linenum)
-! just declare everything as reals and chunk it
-
-character(len=*), intent(in) :: str1
-integer         , intent(in) :: linenum
-
-real(r8), dimension(7) :: values
-integer :: iday, ihour, imin, isec, seconds
-
-values = MISSING_R8
-
-read(str1,*,iostat=rcio) values
-if (rcio /= 0) then
-  write(string1,*)'Cannot parse line',linenum,'. Begins <',trim(str1(1:40)),'>'
-  call error_handler(E_ERR,'stringparse',string1, source, revision, revdate)
-endif
-
-! Stuff what we want into the cosmos structure
-!
-cosmos%month      = nint(values(cosmos%monthindex     ))
-cosmos%day        = nint(values(cosmos%dayindex       ))
-cosmos%hour       =      values(cosmos%hourindex       )
-cosmos%doy        =      values(cosmos%doyindex        )
-cosmos%neutron    =      values(cosmos%neutronindex    )
-cosmos%neutronstd =      values(cosmos%neutronstdindex )
-cosmos%neutronQC  = nint(values(cosmos%neutronQCindex ))
-
-! decode the time - there is baggage here to determine minutes and seconds
-! which might be useful in the future but not now.
-
-iday    = int(cosmos%doy)
-ihour   = int(cosmos%hour)
-seconds = nint((cosmos%hour - real(ihour,r8))*3600)
-imin    = seconds / 60
-isec    = seconds - imin * 60
-
-cosmos%time_obs = set_date(year, cosmos%month, cosmos%day, ihour, imin, isec)
-
-! The QC values can be 'missing' ... in which case the values are too
-
-if (cosmos%neutronQC < 0) cosmos%neutronQC = maxgoodqc + 1000 
-
-end subroutine stringparse
-
-
-
-
-  function read_cosmos_metadata(site_metadata_file)
-!----------------------------------------------------------------------------
-! nsites = read_cosmos_metadata(site_metadata_file)
-!
-! Read the list of parameters for every site we know about and
-! return the number of sites we know about.
-
-integer                      :: read_cosmos_metadata
-character(len=*), intent(in) :: site_metadata_file
-
-integer                               :: strlength
-integer                               :: ncid, isite, VarID
-integer, dimension(NF90_MAX_VAR_DIMS) :: dimIDs
-character(len=metadatalength)         :: sitename
-
-! Check to make sure the required parameter file exists
-
-if ( .not. file_exist(site_metadata_file) ) then
-   write(string1,*) 'COSMIC parameter file [', trim(site_metadata_file),'] does not exist.'
-   call error_handler(E_ERR,'read_cosmos_metadata',string1,source,revision,revdate)
-endif
-
-call nc_check(nf90_open(site_metadata_file, NF90_NOWRITE, ncid), &
-                   'read_cosmos_metadata', 'open '//trim(site_metadata_file))
-
-call nc_check(nf90_inq_dimid(ncid, 'nsites', dimIDs(1)), &
-                  'read_cosmos_metadata','inq_dimid nsites '//trim(site_metadata_file))
-call nc_check(nf90_inquire_dimension(ncid, dimIDs(1), len=read_cosmos_metadata), &
-                  'read_cosmos_metadata','inquire_dimension nsites '//trim(site_metadata_file))
-
-call nc_check(nf90_inq_dimid(ncid, 'strlength', dimIDs(2)), &
-                  'read_cosmos_metadata','inq_dimid strlength '//trim(site_metadata_file))
-call nc_check(nf90_inquire_dimension(ncid, dimIDs(2), len=strlength), &
-                  'read_cosmos_metadata','inquire_dimension strlength '//trim(site_metadata_file))
-
-call nc_check(nf90_inq_varid(ncid, 'sitenames', VarID), &
-                 'read_cosmos_metadata','inq_varid sitenames '//trim(site_metadata_file))
-
-allocate(cosmos_metadata(read_cosmos_metadata))
-
-do isite = 1,read_cosmos_metadata
-
-   sitename = ''
-
-   write(string1,*)'get_var sitename site ',isite,' '//trim(site_metadata_file)
-   call nc_check(nf90_get_var(ncid, VarID, sitename(1:strlength), &
-           start=(/1, isite/), count=(/strlength,1/)), 'read_cosmos_metadata', string1)
-
-   cosmos_metadata(isite)%sitename = trim(sitename(1:strlength))
-
-   call fill_site(ncid, isite)
-
-enddo
-
-call nc_check(nf90_close(ncid), 'read_cosmos_metadata', 'close '//trim(site_metadata_file))
-
-if (verbose) then
-do isite = 1,read_cosmos_metadata
-   write(*,*)
-   write(*,*)'site name ',cosmos_metadata(isite)%sitename
-   write(*,*)'longitude ',cosmos_metadata(isite)%longitude 
-   write(*,*)'latitude  ',cosmos_metadata(isite)%latitude
-   write(*,*)'elevation ',cosmos_metadata(isite)%elevation
-   write(*,*)'bd        ',cosmos_metadata(isite)%bd
-   write(*,*)'lattwat   ',cosmos_metadata(isite)%lattwat
-   write(*,*)'N         ',cosmos_metadata(isite)%N
-   write(*,*)'alpha     ',cosmos_metadata(isite)%alpha
-   write(*,*)'L1        ',cosmos_metadata(isite)%L1
-   write(*,*)'L2        ',cosmos_metadata(isite)%L2
-   write(*,*)'L3        ',cosmos_metadata(isite)%L3
-   write(*,*)'L4        ',cosmos_metadata(isite)%L4
-   write(*,*)
-enddo
-endif
-
-end function read_cosmos_metadata
-
-
-
-subroutine fill_site(ncid, siteindx)
-
-integer,  intent(in) :: ncid, siteindx
-
-call get_var(ncid, siteindx, 'longitude', cosmos_metadata(siteindx)%longitude)
-call get_var(ncid, siteindx, 'latitude' , cosmos_metadata(siteindx)%latitude )
-call get_var(ncid, siteindx, 'elevation', cosmos_metadata(siteindx)%elevation)
-call get_var(ncid, siteindx, 'bd'       , cosmos_metadata(siteindx)%bd       )
-call get_var(ncid, siteindx, 'lattwat'  , cosmos_metadata(siteindx)%lattwat  )
-call get_var(ncid, siteindx, 'N'        , cosmos_metadata(siteindx)%N        )
-call get_var(ncid, siteindx, 'alpha'    , cosmos_metadata(siteindx)%alpha    )
-call get_var(ncid, siteindx, 'L1'       , cosmos_metadata(siteindx)%L1       )
-call get_var(ncid, siteindx, 'L2'       , cosmos_metadata(siteindx)%L2       )
-call get_var(ncid, siteindx, 'L3'       , cosmos_metadata(siteindx)%L3       )
-call get_var(ncid, siteindx, 'L4'       , cosmos_metadata(siteindx)%L4       )
-
-! Ensure that longitudes are [0, 360)
-if (cosmos_metadata(siteindx)%longitude < 0.0_r8) &
-    cosmos_metadata(siteindx)%longitude = cosmos_metadata(siteindx)%longitude + 360.0_r8
-if (cosmos_metadata(siteindx)%longitude == 360.0_r8) &
-    cosmos_metadata(siteindx)%longitude = 0.0_r8
-
-cosmos_metadata(siteindx)%location = set_location(cosmos_metadata(siteindx)%longitude, &
-                                                  cosmos_metadata(siteindx)%latitude,  &
-                                                  cosmos_metadata(siteindx)%elevation, &
-                                                  VERTISSURFACE)
-end subroutine fill_site
-
-
-
-subroutine get_var(ncid, siteindx, varname, slot)
-
-integer,          intent(in)  :: ncid, siteindx
-character(len=*), intent(in)  :: varname
-real(r8),         intent(out) :: slot
-
-real(r8), dimension(1) :: tempspace
-integer :: VarID, start(1), count(1)
-
-start(1) = siteindx
-count(1) = 1
-
-call nc_check(nf90_inq_varid(ncid, varname, VarID), 'read_cosmos_metadata', 'inq_varid '//trim(varname))
-call nc_check(nf90_get_var(ncid, VarID, tempspace, start=start, count=count ), &
-                     'read_cosmos_metadata', 'get_var '//trim(varname))
-slot = tempspace(1)
-
-end subroutine get_var
-
-
-
-    function find_site_index(sitename)
-!-------------------------------------------------------------------------------
-! siteIndx = find_site_index(sitename)
-
-integer                      :: find_site_index
-character(len=*), intent(in) :: sitename
-
-integer :: i, siteID
-character(len=metadatalength) :: testsite, insite
-
-insite = trim(sitename)
-call to_upper(insite) ! convert to upper case - in place
-
-siteID = 0
-
-SITENAMES : do i = 1,nSites
-
-   testsite = trim(cosmos_metadata(i)%sitename)
-   call to_upper(testsite)
-
-   if (testsite == insite) then
-      siteID = i
-      exit SITENAMES
-   endif
-
-enddo SITENAMES
-
-if (siteID == 0) then
-   string1 = 'Unable to find case-insensitive match for site <'//trim(sitename)//'>'
-   string2 = 'Make sure '//trim(site_metadata_file)//' has metadata for this site. Run:'
-   string3 = 'ncdump -v sitenames '//trim(site_metadata_file)
-   call error_handler(E_ERR,'find_site_index', string1, source, revision, revdate, &
-                     text2=string2,text3=string3)
-endif
-
-if (verbose) then
-   write(*,*)
-   write(*,*)'site <'//trim(cosmos_metadata(siteID)%sitename)//'> is number ',siteID
-   write(*,*)'longitude ',cosmos_metadata(siteID)%longitude 
-   write(*,*)'latitude  ',cosmos_metadata(siteID)%latitude
-   write(*,*)'elevation ',cosmos_metadata(siteID)%elevation
-   write(*,*)'bd        ',cosmos_metadata(siteID)%bd
-   write(*,*)'lattwat   ',cosmos_metadata(siteID)%lattwat
-   write(*,*)'N         ',cosmos_metadata(siteID)%N
-   write(*,*)'alpha     ',cosmos_metadata(siteID)%alpha
-   write(*,*)'L1        ',cosmos_metadata(siteID)%L1
-   write(*,*)'L2        ',cosmos_metadata(siteID)%L2
-   write(*,*)'L3        ',cosmos_metadata(siteID)%L3
-   write(*,*)'L4        ',cosmos_metadata(siteID)%L4
-   write(*,*)
-endif
-
-find_site_index = siteID
-
-end function find_site_index
-
-
-
-end program COSMOS_to_obs


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