[Dart-dev] [4979] DART/trunk: Include Tim's new verify tool, and add the html files for the

nancy at ucar.edu nancy at ucar.edu
Thu Jun 9 17:06:14 MDT 2011


Revision: 4979
Author:   nancy
Date:     2011-06-09 17:06:14 -0600 (Thu, 09 Jun 2011)
Log Message:
-----------
Include Tim's new verify tool, and add the html files for the
coverage tool to the index.

Modified Paths:
--------------
    DART/trunk/doc/html/Kodiak_release.html
    DART/trunk/index.html

-------------- next part --------------
Modified: DART/trunk/doc/html/Kodiak_release.html
===================================================================
--- DART/trunk/doc/html/Kodiak_release.html	2011-06-09 21:20:32 UTC (rev 4978)
+++ DART/trunk/doc/html/Kodiak_release.html	2011-06-09 23:06:14 UTC (rev 4979)
@@ -359,6 +359,11 @@
     <a href="../../filter/filter.html#Namelist">filter program namelist</a>
     documentation for details.</LI></UL>
 </LI>
+<LI>The start of a suite of forecast verification and evaluation tools
+    <UL><LI>See the
+    <a href="../../obs_sequence/obs_seq_verify.html">verification tool</a>
+    documentation for details.</LI></UL>
+</LI>
 <LI>Performance improvement in the internal transposes for very large state
 vectors.  all_vars_to_all_copies() now has a single receiver and multiple
 senders, which is much faster than the converse.
@@ -673,12 +678,14 @@
 <P>
 
 <UL>
-<LI>convert obs_seq files to netCDF<br>
+<LI><a href="../../obs_sequence/obs_seq_to_netcdf.html">convert obs_seq files to netCDF</a><br>
 </LI>
-<LI>observation coverage<br>
+<LI><a href="../../obs_sequence/obs_seq_coverage.html">observation coverage</a><br>
 </LI>
-<LI>observation selection<br>
+<LI><a href="../../obs_sequence/obs_selection.html">observation selection</a><br>
 </LI>
+<LI><a href="../../obs_sequence/obs_seq_verify.html">observation verification</a><br>
+</LI>
 <LI><a href="../../obs_sequence/obs_common_subset.html">
 select common observation subsets</a><br>
 A tool that operates on two (will be extended to more) <em class=file>obs_seq.final</em> 

Modified: DART/trunk/index.html
===================================================================
--- DART/trunk/index.html	2011-06-09 21:20:32 UTC (rev 4978)
+++ DART/trunk/index.html	2011-06-09 23:06:14 UTC (rev 4979)
@@ -86,14 +86,18 @@
 contains links to all the documentation for this DART release.
 </P>
 <P>
-The latest official release was named "Jamaica" but that was quite a
-while ago. We have been making significant code improvements since then
-and now recommend people check out the head of the trunk branch of the
-subversion repository.  Still, some of the documentation prepared for the
-last release may be helpful.  See the overview
-<a href="doc/html/Jamaica_release.html">doc/html/Jamaica_release.html</a> and
-the differences from the previous release are highlighted in
-<a href="doc/html/Jamaica_diffs_from_I.html">doc/html/Jamaica_diffs_from_I.html</a>.
+The latest official release is named "Kodiak" and is not likely to
+change for quite a while.  This will be kept in sync with the head
+of the trunk of the
+subversion repository.
+(New development will continue on a separate branch.)
+The "Jamaica" release was over 4 years ago and so the change
+document is extensive.  If you have been using the head of the
+subversion trunk there are very few new differences.
+See the overview
+<a href="doc/html/Kodiak_release.html">doc/html/Kodiak_release.html</a>.
+This page lists any non-backwards-compatible changes from Jamaica,
+and briefly summarizes new functions, models, tools since the Jamaica release.
 </P>
 <P>
 General DART documentation can be found in the 
@@ -162,7 +166,14 @@
 <A HREF="obs_sequence/create_obs_sequence.html">program create_obs_sequence</A> - interactive program to generate synthetic observations
 <A HREF="obs_sequence/create_fixed_network_seq.html">program create_fixed_network_seq</A> - repeat an observation at multiple times
 <A HREF="obs_sequence/obs_sequence_tool.html">program obs_sequence_tool</A> - general observation sequence file manipulation
-<a href="utilities/restart_file_tool.html">program restart_file_tool</a> - utility for DART restart files
+<A HREF="obs_sequence/obs_seq_to_netcdf.html">program obs_seq_to_netcdf</A> - convert obs_seq files to netCDF format
+<A HREF="obs_sequence/obs_common_subset.html">program obs_common_subset</A> - select common observations in two files
+<A HREF="obs_sequence/obs_seq_verify.html">program obs_seq_verify</A> - observation sequence forecast evaluation tool
+<A HREF="obs_sequence/obs_seq_coverage.html">program obs_seq_coverage</A> - observation sequence forecast evaluation tool
+<A HREF="obs_sequence/obs_selection.html">program obs_selection</A> - select obs from one file given a specification for which obs to pick
+<A HREF="utilities/restart_file_tool.html">program restart_file_tool</A> - utility for DART restart files
+<A HREF="utilities/closest_member_tool.html">program closest_member_tool</A> - utility for DART restart files that selects the one closest to the mean
+<A HREF="adaptive_inflate/fill_inflation_restart">program fill_inflation_restart</A> - utility for initializing inflation files
 <A HREF="preprocess/preprocess.html">program preprocess</A> - used during compiling
 <A HREF="integrate_model/integrate_model.html">program integrate_model</A> - wrapper for models called as subroutines
 <A HREF="time_manager/advance_time.html">program advance_time</A> - utility for incrementing calendar times easily for scripting
@@ -201,6 +212,8 @@
 <a href="observations/SSEC/SSEC.html">SSEC data</a>
 <a href="observations/text/text_to_obs.html">ascii/text data</a>
 <a href="observations/var/littler_tf_dart.html">little-r data</a>
+<a href="observations/var/rad_3dvar_to_dart.html">3DVAR radar data</a>
+<a href="observations/var/var.html">var obs data</a>
 <a href="observations/WOD/WOD.html">World Ocean Database data</a>
 </pre>
 
@@ -276,18 +289,30 @@
 <A HREF="location/threed_sphere/location_mod.html#Namelist"><em class=code>&amp;location_nml (3d sphere)</em></A>
 <A HREF="preprocess/preprocess.html#Namelist"><em class=code>&amp;preprocess_nml</em></A>
 <A HREF="obs_kind/obs_kind_mod.html#Namelist"><em class=code>&amp;obs_kind_nml</em></A>
-<A HREF="obs_def/obs_def_radar_mod.nml"><em class=code>&amp;obs_def_radar_mod_nml</em></A>
-<A HREF="obs_def/obs_def_ocean_mod.nml"><em class=code>&amp;obs_def_ocean_mod_nml</em></A>
-<!-- <A HREF="obs_def/obs_def_gps_mod.nml"><em class=code>&amp;obs_def_gps_mod_nml</em></A> -->
+<A HREF="obs_def/obs_def_radar_mod.html#Namelist"><em class=code>&amp;obs_def_radar_mod_nml</em></A>
+<A HREF="obs_def/obs_def_ocean_mod.html#Namelist"><em class=code>&amp;obs_def_ocean_mod_nml</em></A>
+<A HREF="obs_def/obs_def_gps_mod.html#Namelist"><em class=code>&amp;obs_def_gps_mod_nml</em></A> 
 <A HREF="time_manager/schedule_mod.html#Namelist"><em class=code>&amp;schedule_mod_nml</em></A>
 <A HREF="utilities/utilities_mod.html#Namelist"><em class=code>&amp;utilities_nml</em></A>
 <A HREF="mpi_utilities/mpi_utilities_mod.html#Namelist"><em class=code>&amp;mpi_utilities_nml</em></A>
 <A HREF="reg_factor/reg_factor_mod.html#Namelist"><em class=code>&amp;reg_factor_nml</em></A>
 <A HREF="diagnostics/oned/obs_diag.html#Namelist"><em class=code>&amp;obs_diag_nml (1 d)</em></A>
 <A HREF="diagnostics/threed_sphere/obs_diag.html#Namelist"><em class=code>&amp;obs_diag_nml (3d sphere)</em></A>
-<A HREF="observations/NCEP/ascii_to_obs/create_real_obs.nml"><em class=code>&amp;create_real_obs_nml</em></A>
+<A HREF="observations/AIRS/convert_airs_L2.nml"><em class=code>&amp;convert_airs_L2_nml (AIRS obs)</em></A>
+<A HREF="observations/NCEP/ascii_to_obs/create_real_obs.html#Namelist"><em class=code>&amp;create_real_obs_nml (NCEP obs)</em></A>
+<A HREF="observations/WOD/wod_to_obs.html#Namelist"><em class=code>&amp;wod_to_obs_nml (World Ocean DB obs)</em></A>
+<A HREF="observations/quikscat/QuikSCAT.html#Namelist"><em class=code>&amp;convert_L2b_nml (QuikSCAT obs)</em></A>
+<A HREF="observations/var/rad_3dvar_to_dart.html#Namelist"><em class=code>&amp;rad_3dvar_to_dart_nml (Var radar obs)</em></A>
 <A HREF="obs_sequence/obs_sequence_tool.html#Namelist"><em class=code>&amp;obs_sequence_tool_nml </em></A>
-<A HREF="utilities/restart_file_tool.html#Namelist"><em class=code>&amp;restart_file_tool </em></A>
+<A HREF="obs_sequence/obs_common_subset.html#Namelist"><em class=code>&amp;obs_common_subset_nml </em></A>
+<A HREF="obs_sequence/obs_selection.html#Namelist"><em class=code>&amp;obs_selection_nml </em></A>
+<A HREF="obs_sequence/obs_seq_coverage.html#Namelist"><em class=code>&amp;obs_seq_coverage_nml </em></A>
+<A HREF="obs_sequence/obs_seq_verify.html#Namelist"><em class=code>&amp;obs_seq_verify_nml </em></A>
+<A HREF="obs_sequence/obs_seq_to_netcdf.html#Namelist"><em class=code>&amp;obs_seq_to_netcdf_nml </em></A>
+<A HREF="system_simulation/system_simulation.html#Namelist"><em class=code>&amp;full_error_nml (sampling error correction) </em></A>
+<A HREF="utilities/closest_member_tool.html#Namelist"><em class=code>&amp;closest_member_tool_nml </em></A>
+<A HREF="utilities/model_mod_check.html#Namelist"><em class=code>&amp;model_mod_check_nml </em></A>
+<A HREF="utilities/restart_file_tool.html#Namelist"><em class=code>&amp;restart_file_tool_nml </em></A>
 </pre>
 
 
@@ -316,6 +341,7 @@
 <A HREF='obs_def/DEFAULT_obs_def_mod.html'>obs_def/DEFAULT_obs_def_mod</A>
 <A HREF='obs_def/obs_def_1d_state_mod.html'>obs_def/obs_def_1d_state_mod</A>
 <A HREF='obs_def/obs_def_dew_point_mod.html'>obs_def/obs_def_dew_point_mod</A>
+<A HREF='obs_def/obs_def_gps_mod.html'>obs_def/obs_def_gps_mod</A>
 <A HREF='obs_def/obs_def_mod.html'>obs_def/obs_def_mod</A>
 <A HREF='obs_def/obs_def_ocean_mod.html'>obs_def/obs_def_ocean_mod</A>
 <A HREF='obs_def/obs_def_radar_mod.html'>obs_def/obs_def_radar_mod</A>
@@ -345,27 +371,26 @@
 </P>
 
 <pre>
-<A HREF='doc/html/Jamaica_release.html'>doc/html/Jamaica_release</A>
-<A HREF='doc/html/Jamaica_diffs_from_I.html'>doc/html/Jamaica_diffs_from_I</A>
-<A HREF='doc/html/mpi_intro.html'>doc/html/mpi_intro</A>
-<A HREF='doc/html/filter_async_modes.html'>doc/html/filter_async_modes</A>
-<A HREF='doc/html/ASP_DART_exercise.html'>doc/html/ASP_DART_exercise</A>
-<A HREF='doc/html/DART_ASP_Summer2003.html'>doc/html/DART_ASP_Summer2003</A>
-<A HREF='doc/html/Fiji_release.html'>doc/html/Fiji_release</A>
-<A HREF='doc/html/Guam_release.html'>doc/html/Guam_release</A>
-<A HREF='doc/html/I_diffs_from_workshop.html'>doc/html/I_diffs_from_workshop</A>
-<A HREF='doc/html/Iceland_release.html'>doc/html/Iceland_release</A>
-<A HREF='doc/html/PostI_diffs_from_I.html'>doc/html/PostI_diffs_from_I</A>
-<A HREF='doc/html/Post_Iceland_release.html'>doc/html/Post_Iceland_release</A>
-<A HREF='doc/html/boilerplate.html'>doc/html/boilerplate</A>
-<A HREF='doc/html/hawaii_release.html'>doc/html/hawaii_release</A>
-<A HREF='doc/html/header.html'>doc/html/header</A>
-<A HREF='doc/html/pre_guam_release.html'>doc/html/pre_guam_release</A>
-<A HREF='doc/html/pre_hawaii_release.html'>doc/html/pre_hawaii_release</A>
-<A HREF='doc/html/pre_j_release.html'>doc/html/pre_j_release</A>
-<A HREF='converters/littler_tf_dart.html'>converters/littler_tf_dart</A>
-<A HREF='mkmf/mkmf.html'>mkmf/mkmf</A>
-<A HREF='DART_LAB/DART_LAB.html'>DART_LAB/DART_LAB</A>
+<A HREF='doc/html/Kodiak_release.html'>Kodiak release notes</A>
+<A HREF='doc/html/Jamaica_release.html'>Jamaica release notes</A>
+<A HREF='doc/html/Jamaica_diffs_from_I.html'>Jamaica differences from Iceland</A>
+<A HREF='doc/html/mpi_intro.html'>MPI intro</A>
+<A HREF='doc/html/filter_async_modes.html'>Filter 'async' modes</A>
+<A HREF='doc/html/ASP_DART_exercise.html'>ASP DART exercises</A>
+<A HREF='doc/html/DART_ASP_Summer2003.html'>DART ASP Summer 2003 Workshop</A>
+<A HREF='doc/html/Fiji_release.html'>Fiji release notes</A>
+<A HREF='doc/html/Guam_release.html'>Guam release notes</A>
+<A HREF='doc/html/I_diffs_from_workshop.html'>I_diffs_from_workshop</A>
+<A HREF='doc/html/Iceland_release.html'>Iceland release notes</A>
+<A HREF='doc/html/PostI_diffs_from_I.html'>PostI_diffs_from_I</A>
+<A HREF='doc/html/Post_Iceland_release.html'>Post_Iceland_release</A>
+<A HREF='doc/html/template.html'>template doc file</A>
+<A HREF='doc/html/hawaii_release.html'>Hawaii release notes</A>
+<A HREF='doc/html/pre_guam_release.html'>Pre_guam release notes</A>
+<A HREF='doc/html/pre_hawaii_release.html'>Pre_hawaii release notes</A>
+<A HREF='doc/html/pre_j_release.html'>Pre_J release notes</A>
+<A HREF='mkmf/mkmf.html'>mkmf</A>
+<A HREF='DART_LAB/DART_LAB.html'>DART_LAB</A>
 </pre>
 
 
@@ -389,7 +414,6 @@
 <a href="cov_cutoff/cov_cutoff_mod.html">cov_cutoff_mod</a>
 <a href="diagnostics/oned/obs_diag.html">1D obs_diag</a>
 <a href="diagnostics/threed_sphere/obs_diag.html">3D sphere obs_diag</a>
-<a href="diagnostics/threed_sphere/obs_seq_to_netcdf.html">obs_seq_to_netcdf</a>
 <a href="doc/html/ASP_DART_exercise.html">ASP_DART_exercise</a>
 <a href="doc/html/boilerplate.html">boilerplate</a>
 <a href="doc/html/DART_ASP_Summer2003.html">DART_ASP_Summer2003</a>
@@ -397,7 +421,6 @@
 <a href="doc/html/filter_async_modes.html">filter_async_modes</a>
 <a href="doc/html/Guam_release.html">Guam_release</a>
 <a href="doc/html/hawaii_release.html">hawaii_release</a>
-<a href="doc/html/header.html">header</a>
 <a href="doc/html/I_diffs_from_workshop.html">I_diffs_from_workshop</a>
 <a href="doc/html/Iceland_release.html">Iceland_release</a>
 <a href="doc/html/Jamaica_diffs_from_I.html">Jamaica_diffs_from_I</a>
@@ -408,6 +431,7 @@
 <a href="doc/html/pre_guam_release.html">pre_guam_release</a>
 <a href="doc/html/pre_hawaii_release.html">pre_hawaii_release</a>
 <a href="doc/html/pre_j_release.html">pre_j_release</a>
+<a href="doc/html/template.html">html_template</a>
 <a href="ensemble_manager/ensemble_manager_mod.html">ensemble_manager_mod</a>
 <a href="filter/filter.html">filter</a>
 <a href="filter/wakeup_filter.html">wakeup_filter</a>
@@ -438,10 +462,19 @@
 <a href="models/template/model_mod.f90">models/template/model_mod.f90</a>
 <a href="models/wrf/model_mod.f90">models/wrf/model_mod.f90</a>
 <a href="models/9var/model_mod.html">9var/model_mod</a>
-<a href="models/cam/doc/index.html">cam/doc/index</a>
+<a href="models/MITgcm_ocean/create_ocean_obs.html">MITgcm_ocean/create_ocean_obs</a>
+<a href="models/MITgcm_ocean/model_mod.html">MITgcm_ocean/model_mod</a>
+<a href="models/MITgcm_ocean/trans_pv_sv.html">MITgcm_ocean/trans_pv_sv</a>
+<a href="models/MITgcm_ocean/trans_sv_pv.html">MITgcm_ocean/trans_sv_pv</a>
+<a href="models/PBL_1d/model_mod.html">PBL_1d/model_mod</a>
+<a href="models/POP/dart_pop_mod.html">POP/dart_pop_mod</a>
+<a href="models/POP/dart_to_pop.html">POP/dart_to_pop</a>
+<a href="models/POP/model_mod.html">POP/model_mod</a>
+<a href="models/POP/pop_to_dart.html">POP/pop_to_dart</a>
+<a href="models/cam/cam_to_dart.html">cam/cam_to_dart</a>
+<a href="models/cam/dart_to_cam.html">cam/dart_to_cam</a>
+<a href="models/cam/doc/cam_guidelines.html">cam/doc/cam_guidelines</a>
 <a href="models/cam/doc/script_doc.html">cam/doc/script_doc</a>
-<a href="models/cam/doc/trans_date_to_dart_instr.html">cam/doc/trans_date_to_dart_instr</a>
-<a href="models/cam/doc/trans_pv_sv_time0_instr.html">cam/doc/trans_pv_sv_time0_instr</a>
 <a href="models/cam/model_mod.html">cam/model_mod</a>
 <a href="models/coamps/model_mod.html">coamps/model_mod</a>
 <a href="models/forced_lorenz_96/model_mod.html">forced_lorenz_96/model_mod</a>
@@ -451,16 +484,19 @@
 <a href="models/lorenz_84/model_mod.html">lorenz_84/model_mod</a>
 <a href="models/lorenz_96/model_mod.html">lorenz_96/model_mod</a>
 <a href="models/model_mod.html">model_mod</a>
+<a href="models/null_model.html">null_model</a>
 <a href="models/PBL_1d/model_mod.html">PBL_1d/model_mod</a>
 <a href="models/pe2lyr/model_mod.html">pe2lyr/model_mod</a>
 <a href="models/simple_advection/model_mod.html">simple_advection/model_mod</a>
 <a href="models/wrf/model_mod.html">wrf/model_mod</a>
 <a href="models/wrf/shell_scripts/advance_model.html">wrf/shell_scripts/advance_model</a>
 <a href="models/wrf/WRF_DART_utilities/dart_to_wrf.html">wrf/WRF_DART_utilities/dart_to_wrf</a>
+<a href="models/wrf/WRF_DART_utilities/replace_wrf_fields.html">wrf/WRF_DART_utilities/replace_wrf_fields</a>
 <a href="mpi_utilities/mpi_utilities_mod.html">mpi_utilities_mod</a>
 <a href="obs_def/DEFAULT_obs_def_mod.html">DEFAULT_obs_def_mod</a>
 <a href="obs_def/obs_def_1d_state_mod.html">obs_def_1d_state_mod</a>
 <a href="obs_def/obs_def_dew_point_mod.html">obs_def_dew_point_mod</a>
+<a href="obs_def/obs_def_gps_mod.html">obs_def_gps_mod</a>
 <a href="obs_def/obs_def_mod.html">obs_def_mod</a>
 <a href="obs_def/obs_def_ocean_mod.html">obs_def_ocean_mod</a>
 <a href="obs_def/obs_def_radar_mod.html">obs_def_radar_mod</a>
@@ -469,6 +505,11 @@
 <a href="obs_model/obs_model_mod.html">obs_model_mod</a>
 <a href="obs_sequence/create_fixed_network_seq.html">create_fixed_network_seq</a>
 <a href="obs_sequence/create_obs_sequence.html">create_obs_sequence</a>
+<a href="obs_sequence/obs_common_subset.html">obs_common_subset</a>
+<a href="obs_sequence/obs_selection.html">obs_selection</a>
+<a href="obs_sequence/obs_seq_coverage.html">obs_seq_coverage</a>
+<a href="obs_sequence/obs_seq_to_netcdf.html">obs_seq_to_netcdf</a>
+<a href="obs_sequence/obs_seq_verify.html">obs_seq_verify</a>
 <a href="obs_sequence/obs_sequence_mod.html">obs_sequence_mod</a>
 <a href="obs_sequence/obs_sequence_tool.html">obs_sequence_tool</a>
 <a href="observations/AIRS/AIRS.html">AIRS obs converter</a>
@@ -484,13 +525,18 @@
 <a href="observations/text/text_to_obs.html">text obs converter</a>
 <a href="observations/WOD/WOD.html">WOD obs converter</a>
 <a href="observations/var/littler_tf_dart.html">little-r obs converter</a>
+<a href="observations/var/rad_3d_var_to_dart.html">var radar obs converter</a>
+<a href="observations/var/var.html">var obs converter</a>
 <a href="perfect_model_obs/perfect_model_obs.html">perfect_model_obs</a>
 <a href="preprocess/preprocess.html">preprocess</a>
+<a href="system_simulation/system_simulation.html">system_simulation (sampling error correction)</a>
 <a href="random_nr/random_nr_mod.html">random_nr_mod</a>
 <a href="random_seq/random_seq_mod.html">random_seq_mod</a>
 <a href="reg_factor/reg_factor_mod.html">reg_factor_mod</a>
 <a href="smoother/smoother_mod.html">smoother_mod</a>
 <a href="utilities/PrecisionCheck.html">PrecisionCheck</a>
+<a href="utilities/closest_member_tool.html">closest_member_tool</a>
+<a href="utilities/model_mod_check.html">model_mod_check</a>
 <a href="utilities/restart_file_tool.html">restart_file_tool</a>
 <a href="utilities/utilities_mod.html">utilities_mod</a>
 </pre>


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