[Dart-dev] [4213] DART/trunk: Huge overhaul to conform to HTML spec and to provide

nancy at ucar.edu nancy at ucar.edu
Fri Jan 8 17:16:03 MST 2010


Revision: 4213
Author:   thoar
Date:     2010-01-08 17:16:03 -0700 (Fri, 08 Jan 2010)
Log Message:
-----------
Huge overhaul to conform to HTML spec and to provide
new terms of use.

Modified Paths:
--------------
    DART/trunk/assim_model/assim_model_mod.html
    DART/trunk/assim_tools/assim_tools_mod.html
    DART/trunk/common/types_mod.html
    DART/trunk/cov_cutoff/cov_cutoff_mod.html
    DART/trunk/doc/html/cgd_cam.shtml
    DART/trunk/doc/html/filter_async_modes.html
    DART/trunk/doc/html/index.shtml
    DART/trunk/doc/html/mpi_intro.html
    DART/trunk/ensemble_manager/ensemble_manager_mod.html
    DART/trunk/index.html
    DART/trunk/location/oned/location_mod.html
    DART/trunk/location/threed_sphere/location_mod.html
    DART/trunk/models/cam/doc/index.html
    DART/trunk/models/cam/doc/script_doc.html
    DART/trunk/models/cam/doc/trans_date_to_dart_instr.html
    DART/trunk/models/cam/doc/trans_pv_sv_time0_instr.html
    DART/trunk/mpi_utilities/mpi_utilities_mod.html
    DART/trunk/ncep_obs/prep_bufr/prep_bufr.html
    DART/trunk/obs_def/DEFAULT_obs_def_mod.html
    DART/trunk/obs_def/obs_def_1d_state_mod.html
    DART/trunk/obs_def/obs_def_dew_point_mod.html
    DART/trunk/obs_def/obs_def_mod.html
    DART/trunk/obs_def/obs_def_ocean_mod.html
    DART/trunk/obs_def/obs_def_radar_mod.html
    DART/trunk/obs_kind/DEFAULT_obs_kind_mod.html
    DART/trunk/obs_kind/obs_kind_mod.html
    DART/trunk/obs_model/obs_model_mod.html
    DART/trunk/random_nr/random_nr_mod.html
    DART/trunk/random_seq/random_seq_mod.html
    DART/trunk/reg_factor/reg_factor_mod.html
    DART/trunk/smoother/smoother_mod.html
    DART/trunk/time_manager/schedule_mod.html
    DART/trunk/time_manager/time_manager_mod.html
    DART/trunk/utilities/utilities_mod.html

Property Changed:
----------------
    DART/trunk/obs_def/obs_def_ocean_mod.html

-------------- next part --------------
Modified: DART/trunk/assim_model/assim_model_mod.html
===================================================================
--- DART/trunk/assim_model/assim_model_mod.html	2010-01-08 17:22:15 UTC (rev 4212)
+++ DART/trunk/assim_model/assim_model_mod.html	2010-01-09 00:16:03 UTC (rev 4213)
@@ -1,66 +1,29 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN"
+          "http://www.w3.org/TR/html4/strict.dtd">
 <HTML>
 <HEAD>
 <TITLE>module assim_model_mod</TITLE>
-<link rel="stylesheet" type="text/css" href="../doc/html/doc.css"></link> 
+<link rel="stylesheet" type="text/css" href="../doc/html/doc.css">
 </HEAD>
 <BODY>
-<!--
-!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
-!!                                                                       !!
-!!                   GNU General Public License                          !!
-!!                                                                       !!
-!! This file is part of the Data Assimilation Research Testbed (DART).   !!
-!!                                                                       !!
-!! DART is free software; you can redistribute it and/or modify          !!
-!! it and are expected to follow the terms of the GNU General Public     !!
-!! License as published by the Free Software Foundation.                 !!
-!!                                                                       !!
-!! DART is distributed in the hope that it will be useful,               !!
-!! but WITHOUT ANY WARRANTY; without even the implied warranty of        !!
-!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         !!
-!! GNU General Public License for more details.                          !!
-!!                                                                       !!
-!! You should have received a copy of the GNU General Public License     !!
-!! along with DART; if not, write to:                                    !!
-!!          Free Software Foundation, Inc.                               !!
-!!          59 Temple Place, Suite 330                                   !!
-!!          Boston, MA  02111-1307  USA                                  !!
-!! or see:                                                               !!
-!!          http://www.gnu.org/licenses/gpl.txt                          !!
-!!                                                                       !!
-!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
--->
+<A NAME="TOP"></A>
 
-<DIV ALIGN=CENTER>
-<A HREF="#Interface">INTERFACE</A> / 
-<A HREF="#PublicEntities">PUBLIC COMPONENTS</A> / 
+<div>
+<center>
+<A HREF="#Interface">INTERFACES</A> / 
 <A HREF="#Namelist">NAMELIST</A> / 
 <A HREF="#FilesUsed">FILES</A> /
 <A HREF="#References">REFERENCES</A> /
 <A HREF="#Errors">ERRORS</A> /
-<A HREF="#KnownBugs">BUGS</A> /
 <A HREF="#FuturePlans">PLANS</A> /
-<A HREF="#PrivateComponents">PRIVATE COMPONENTS</A>
-</DIV>
+<A HREF="#PrivateComponents">PRIVATE COMPONENTS</A> /
+<A HREF="#Legalese">TERMS OF USE</A>
+</center>
+</div>
 
-<!--==================================================================-->
-
 <H1>MODULE assim_model_mod</H1>
-<A NAME="HEADER"></A>
-<TABLE summary="">
-<TR><TD>Contact:       </TD><TD> Jeff Anderson     </TD></TR>
-<TR><TD>Revision:      </TD><TD> $Revision$ </TD></TR>
-<TR><TD>Source:        </TD><TD> $URL$ </TD></TR>
-<TR><TD>Change Date:   </TD><TD> $Date$ </TD></TR>
-<TR><TD>Change history:</TD><TD> try "svn log" or "svn diff" </TD></TR>
-</TABLE>
+<!-- version tag follows, do not edit --><P>$Id$</P>
 
-<!--==================================================================-->
-
-<A NAME="OVERVIEW"></A>
-<HR>
-<H2>OVERVIEW</H2>
-
 <P>
    This module acts as an intermediary between DART compliant models
    and the filter. At one time the assim_model_type, which combines a
@@ -77,8 +40,8 @@
 
 <!--==================================================================-->
 
-<A NAME="OTHER MODULES USED"></A>
-<BR><HR><BR>
+<A NAME="OtherModulesUsed"></A>
+<HR>
 <H2>OTHER MODULES USED</H2>
 <PRE>
 types_mod
@@ -86,88 +49,87 @@
 time_manager_mod
 utilities_mod
 model_mod
-
 netcdf
 typeSizes (part of netcdf)
 </PRE>
 
 <!--==================================================================-->
 <!--Note to authors. The first row of the table is different.         -->
+<!--==================================================================-->
+<!-- Declare all public entities ...                                  -->
+<!-- duplicate public routines template as many times as necessary    -->
+<!-- make sure you replace all yyyroutine?? strings                   -->
+<!--==================================================================-->
 
-
 <A NAME="Interface"></A>
-<BR><HR><BR>
-<H2>PUBLIC INTERFACE</H2>
+<HR>
+<H2>PUBLIC INTERFACES</H2>
 
 <TABLE>
 <TR><TD><em class=call>use assim_model_mod, only : </em></TD>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine42">adv_1step</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine31">aget_closest_state_time_to</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine5" >aget_initial_condition</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine29">aoutput_diagnostics</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine30">aread_state_restart</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyypubtype1" >assim_model_type</A> </TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine32">awrite_state_restart</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine41">close_restart</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine11">copy_assim_model</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine20">end_assim_model</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine44">ens_mean_for_model</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine28">finalize_diag_output</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine45">get_close_maxdist_init</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine46">get_close_obs</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine47">get_close_obs_init</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine4" >get_closest_state_time_to</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine24">get_diag_input_copy_meta_data</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine43">get_initial_condition</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine3" >get_model_size</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine10">get_model_state_vector</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine9" >get_model_time</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine38">get_model_time_step</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine6" >get_state_meta_data</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine25">init_assim_model</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine22">init_diag_input</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine2" >init_diag_output</A> </TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine23">input_diagnostics</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine13">interpolate</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine35">nc_append_time</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine37">nc_get_tindex</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine36">nc_write_calendar_atts</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyypubtype2" >netcdf_file_type</A> </TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine39">open_restart_read</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine40">open_restart_write</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine19">output_diagnostics</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine34">pert_model_state</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine18">read_state_restart</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine16">set_model_state_vector</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine15">set_model_time</A></TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine1" >static_init_assim_model</A> </TD></TR>
-<TR><TD>&nbsp;</TD><TD><A HREF="#yyyroutine17">write_state_restart</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#adv_1step">adv_1step</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#aget_closest_state_time_to">aget_closest_state_time_to</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#aget_initial_condition" >aget_initial_condition</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#aoutput_diagnostics">aoutput_diagnostics</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#aread_state_restart">aread_state_restart</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#assim_model_type" >assim_model_type</A> </TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#awrite_state_restart">awrite_state_restart</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#close_restart">close_restart</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#copy_assim_model">copy_assim_model</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#end_assim_model">end_assim_model</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#ens_mean_for_model">ens_mean_for_model</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#finalize_diag_output">finalize_diag_output</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#get_close_maxdist_init">get_close_maxdist_init</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#get_close_obs">get_close_obs</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#get_close_obs_init">get_close_obs_init</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#get_closest_state_time_to" >get_closest_state_time_to</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#get_diag_input_copy_meta_data">get_diag_input_copy_meta_data</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#get_initial_conditions">get_initial_condition</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#get_model_size" >get_model_size</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#get_model_state_vector">get_model_state_vector</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#get_model_time" >get_model_time</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#get_model_time_step">get_model_time_step</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#get_state_meta_data" >get_state_meta_data</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#init_assim_model">init_assim_model</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#init_diag_input">init_diag_input</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#init_diag_output" >init_diag_output</A> </TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#input_diagnostics">input_diagnostics</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#interpolate">interpolate</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#nc_append_time">nc_append_time</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#nc_get_tindex">nc_get_tindex</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#nc_write_calendar_atts">nc_write_calendar_atts</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#netcdf_file_type" >netcdf_file_type</A> </TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#open_restart_read">open_restart_read</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#open_restart_write">open_restart_write</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#output_diagnostics">output_diagnostics</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#pert_model_state">pert_model_state</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#read_state_restart">read_state_restart</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#set_model_state_vector">set_model_state_vector</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#set_model_time">set_model_time</A></TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#static_init_assim_model" >static_init_assim_model</A> </TD></TR>
+<TR><TD>&nbsp;</TD><TD><A HREF="#write_state_restart">write_state_restart</A></TD></TR>
 </TABLE>
 
 <H3 class=indent1>NOTES</H3>
 
 <P>
-Optional namelist interface 
+Optional namelist interface
 <A HREF="#Namelist"> <em class=code>&#38;assim_model_nml</em> </A>
 may be read from file <em class=file>input.nml</em>.
 </P>
 
-<!--==================================================================-->
-<!-- Declare all public entities ...                                  -->
-<!-- duplicate public routines template as many times as necessary    -->
-<!-- make sure you replace all yyyroutine?? strings                   -->
-<!--==================================================================-->
+<P>
+   A note about documentation style. 
+   Optional arguments are enclosed in brackets 
+   <em class=optionalcode>[like this]</em>.
+</P>
 
-<A NAME="PublicEntities"></A>
-<BR><HR><BR>
-<H2>PUBLIC COMPONENTS</H2>
-<BR>
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
 
-<!--=================== DESCRIPTION OF A LOCAL TYPE ==================-->
-
-<A NAME="yyypubtype1"></A>
-<BR><HR><BR>
-<div class=type><pre>
+<A NAME="assim_model_type"></A>
+<br>
+<div class=routine>
+<pre>
 <em class=call>type assim_model_type</em>
    private
    real(r8), pointer   :: state_vector(:) 
@@ -175,9 +137,11 @@
    integer             :: model_size
    integer             :: copyID
 end type assim_model_type
-</pre></div>
+</pre>
+</div>
 
-<H3 class=indent1>Description</H3>
+<div class=indent1>
+<!-- Description -->
 
 <P>
 This type is used to represent both the state and time of a state
@@ -187,20 +151,24 @@
 <TABLE border=0 cellpadding=3 width=100%>
 <TR><TH align=left>Component   </TH>
     <TH align=left>Description </TH></TR>
-<TR><TD valign=top> state_vector                       </TD>
-    <TD>A one dimensional representation of the model state vector. </TD></TR>
-<TR><TD valign=top> time                       </TD>
-    <TD>The time of the model state. </TD></TR>
-<TR><TD valign=top> model_size                       </TD>
-    <TD>Size of the model state vector. </TD></TR>
-<TR><TD valign=top> copyID                       </TD>
+<TR><TD valign=top> state_vector </TD>
+    <TD>A one dimensional representation of the model state vector.</TD></TR>
+<TR><TD valign=top> time         </TD>
+    <TD>The time of the model state.</TD></TR>
+<TR><TD valign=top> model_s      </TD>
+    <TD>Size of the model state vector.</TD></TR>
+<TR><TD valign=top> copyID       </TD>
     <TD>Not used in present implementation.</TD></TR>
 </TABLE>
-<!--=================== DESCRIPTION OF A LOCAL TYPE ==================-->
 
-<A NAME="yyypubtype2"></A>
-<BR><HR><BR>
-<div class=type><pre>
+</div>
+<br>
+
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
+
+<A NAME="netcdf_file_type"></A>
+<br>
+<div class=routine><pre>
 <em class=call>type netcdf_file_type</em>
    integer             :: ncid
    integer             :: Ntimes
@@ -209,9 +177,11 @@
    type(time_type), pointer :: times(:)
    character(len = 80)      :: fname
 end type netcdf_file_type
-</pre></div>
+</pre>
+</div>
 
-<H3 class=indent1>Description</H3>
+<div class=indent1>
+<!-- Description -->
 
 <P>
 Basically, we want to keep a local mirror of the unlimited dimension
@@ -236,42 +206,48 @@
     <TD>Netcdf file name.           </TD></TR>
 </TABLE>
 
-<!--===================== DESCRIPTION OF SUBROUTINE =====================-->
+</div>
+<br>
 
-<A NAME="yyyroutine1"></A>
-<P></P><HR><P></P>
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
+
+<A NAME="static_init_assim_model"></A>
+<br>
 <div class=routine>
 <em class=call>call static_init_assim_model() </em>
-<pre>
-</pre></div>
+</div>
 
-<H3 class=indent1>Description</H3>
-
+<div class=indent1>
+<!-- Description -->
 <P>
    Initializes the assim_model class. Must be called before any other 
    assim_model_mod interfaces are used. Also calls the static initialization
-   for the underlying model.
+   for the underlying model. There are no arguments.
 </P>
 
-<H3 class=indent1>Notes</H3>
+</div>
+<br>
 
-<!--===================== DESCRIPTION OF FUNCTION =====================-->
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
 
-<A NAME="yyyroutine2"></A>
-<P></P><HR><P></P>
+<A NAME="init_diag_output"></A>
+<br>
 <div class=routine>
 <em class=call> ncFileID = init_diag_output(FileName, global_meta_data, 
-   copies_of_field_per_time, meta_data_per_copy <em class=optionalcode>[, lagID]</em>) </em>
+   copies_of_field_per_time, meta_data_per_copy 
+   <em class=optionalcode>[,&nbsp;lagID]</em>) </em>
 <pre>
 type(netcdf_file_type)          :: <em class=code>init_diag_output </em>
 character (len = *), intent(in) :: <em class=code>FileName </em>
 character (len = *), intent(in) :: <em class=code>global_meta_data </em>
 integer, intent(in)             :: <em class=code>copies_of_field_per_time </em>
 character (len = *), intent(in) :: <em class=code>meta_data_per_copy(copies_of_field_per_time) </em>
-integer, optional, intent(in)   :: <em class=code>lagID </em>
-</pre></div>
+integer, optional, intent(in)   :: <em class=optionalcode>lagID </em>
+</pre>
+</div>
 
-<H3 class=indent1>Description</H3>
+<div class=indent1>
+<!-- Description -->
 
 <P>
    Initializes a netCDF file for output of state space diagnostics. A handle to 
@@ -285,13 +261,13 @@
         This is not an integer unit number, but a derived type
         containing additional information about the opened file.</TD></TR>
 
-<TR><TD valign=top><em class=code>FileName &nbsp; &nbsp; </em></TD>
+<TR><TD valign=top><em class=code>FileName</em></TD>
     <TD>Name of file to open.</TD></TR>
 
 <TR><TD valign=top><em class=code>global_meta_data</em></TD>
     <TD>Global metadata that describes the contents of this file.</TD></TR>
 
-<TR><TD valign=top><em class=code>copies_of_field_per_time</em></TD>
+<TR><TD valign=top><em class=code>copies_of_field_per_time&nbsp;&nbsp;&nbsp;</em></TD>
     <TD> Number of copies of data to be written at each time. For instance,
          these could be the prior ensemble members, prior ensemble mean, 
          prior ensemble spread, posterior ensemble members, posterior
@@ -300,45 +276,51 @@
 <TR><TD valign=top><em class=code>meta_data_per_copy</em></TD>
     <TD> Metadata describing each of the copies.</TD></TR>
 
-<TR><TD valign=top><em class=code>lagID</em></TD>
+<TR><TD valign=top><em class=optionalcode>lagID</em></TD>
     <TD>If using the smoother, which lag number this output is for.</TD></TR>
 
 </TABLE>
 
-<BR>
+</div>
+<br>
 
-<!--===================== DESCRIPTION OF FUNCTION =====================-->
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
 
-<A NAME="yyyroutine3"></A>
-<P></P><HR><P></P>
+<A NAME="get_model_size"></A>
+<br>
 <div class=routine>
 <em class=call> var = get_model_size() </em>
 <pre>
 integer :: <em class=code>get_model_size </em>
-</pre></div>
+</pre>
+</div>
 
-<H3 class=indent1>Description</H3>
+<div class=indent1>
+<!-- Description -->
 
 <P>
   Returns the size of the model state vector. 
   This is a direct pass through to the model_mod.   
 </P>
 
-<BR>
+</div>
+<br>
 
-<!--===================== DESCRIPTION OF FUNCTION =====================-->
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
 
-<A NAME="yyyroutine4"></A>
-<P></P><HR><P></P>
+<A NAME="get_closest_state_time_to"></A>
+<br>
 <div class=routine>
 <em class=call> var = get_closest_state_time_to(assim_model, time) </em>
 <pre>
 type(time_type)                     :: <em class=code> get_closest_state_time_to </em>
 type(assim_model_type), intent(in)  :: <em class=code> assim_model </em>
 type(time_type), intent(in)         :: <em class=code> time</em>
-</pre></div>
+</pre>
+</div>
 
-<H3 class=indent1>Description</H3>
+<div class=indent1>
+<!-- Description -->
 
 <P>
   Returns the closest time that a model is capable of advancing a given state to a 
@@ -352,7 +334,7 @@
 <TR><TD valign=top><em class=code>var</em></TD>
     <TD>The closest time to which the model can be advanced is returned.</TD></TR>
 
-<TR><TD valign=top><em class=code>assim_model &nbsp; &nbsp; </em></TD>
+<TR><TD valign=top><em class=code>assim_model &nbsp;&nbsp;&nbsp;</em></TD>
     <TD>A model state vector and time that might be advanced.</TD></TR>
 
 <TR><TD valign=top><em class=code>time</em></TD>
@@ -360,907 +342,1141 @@
 
 </TABLE>
 
-<BR>
+</div>
+<br>
 
-<!--==================================================================-->
- <!--============= DESCRIPTION OF A SUBROUTINE =======================-->
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
 
- <A NAME="yyyroutine5"></A>
- <P></P><HR><P></P>
- <div class=routine>
- <em class=call> call aget_initial_condition(time, x) </em>
- <pre>
- type(time_type), intent(out) :: <em class=code>time</em>
- type(r8), intent(out) :: <em class=code>x</em>
- </pre></div>
- <H3 class=indent1>Description</H3>
- <P>
- Reads an initial time and state vector from a restart format file
- into a real time and real array, which are put into an assim_model_type.
- </P>
- <TABLE width=100% border=0 summary="" celpadding=3>
- <TR><TD valign=top><em class=code>time&nbsp; &nbsp; </em></TD>
-     <TD>Contains time of input state vector on return</TD></TR>
- <TR><TD valign=top><em class=code>x&nbsp; &nbsp; </em></TD>
-     <TD>Contains state of input state vector on return</TD></TR>
- </TABLE>
- <BR>
+<A NAME="aget_initial_condition"></A>
+<br>
+<div class=routine>
+<em class=call> call aget_initial_condition(time, x) </em>
+<pre>
+type(time_type), intent(out) :: <em class=code>time</em>
+type(r8), intent(out) :: <em class=code>x</em>
+</pre>
+</div>
 
- <!--================================================================-->
- <!--============= DESCRIPTION OF A SUBROUTINE ======================-->
- <A NAME="yyyroutine6"></A>
- <P></P><HR><P></P>
- <div class=routine>
- <em class=call> call get_state_meta_data() </em>
- <pre>
- </pre></div>
- <H3 class=indent1>Description</H3>
- <P>
-Pass through to model_mod.  See model_mod documentation
-for arguments and description. 
- </P>
- <TABLE width=100% border=0 summary="" celpadding=3>
- </TABLE>
- <BR>
+<div class=indent1>
+<!-- Description -->
 
- <!--================================================================-->
- 
- <!--============= DESCRIPTION OF A FUNCTION ========================-->
-<A NAME="yyyroutine9"></A>
- <P></P><HR><P></P>
- <div class=routine>
- <em class=call> var = get_model_time(assim_model) </em>
- <pre>
- type(time_type)                    :: <em class=code>get_model_time</em>
- type(assim_model_type), intent(in) :: <em class=code>assim_model</em>
- </pre></div>
- <H3 class=indent1>Description</H3>
- <P>
- Returns time from an assim_model type.
- </P>
- <TABLE width=100% border=0 summary="" celpadding=3>
- <TR><TD valign=top><em class=code>var&nbsp; &nbsp; </em></TD>
-     <TD>Returned time from assim_model</TD></TR>
- <TR><TD valign=top><em class=code>assim_model&nbsp; &nbsp; </em></TD>
-     <TD>Assim_model type from which to extract time</TD></TR>
- </TABLE>
- <BR>
+<P>
+Reads an initial time and state vector from a restart format file
+into a real time and real array, which are put into an assim_model_type.
+</P>
 
- <!--================================================================-->
- <!--============= DESCRIPTION OF A FUNCTION ========================-->
-<A NAME="yyyroutine10"></A>
- <P></P><HR><P></P>
- <div class=routine>
- <em class=call> var = get_model_state_vector(assim_model) </em>
- <pre>
- real(r8)                           :: <em class=code>get_model_state_vector(model_size)</em>
- type(assim_model_type), intent(in) :: <em class=code>assim_model</em>
- </pre></div>
- <H3 class=indent1>Description</H3>
- <P>
- Returns the state vector component from an assim_model_type.
- </P>
- <TABLE width=100% border=0 summary="" celpadding=3>
- <TR><TD valign=top><em class=code>var&nbsp; &nbsp; </em></TD>
-     <TD>Returned state vector</TD></TR>
- <TR><TD valign=top><em class=code>assim_model&nbsp; &nbsp; </em></TD>
-     <TD>Input assim_model_type</TD></TR>
- </TABLE>
- <BR>
+<TABLE width=100% border=0 summary="" cellpadding=3>
+<TR><TD valign=top><em class=code>time&nbsp;&nbsp;&nbsp;</em></TD>
+    <TD>Contains time of input state vector on return</TD></TR>
+<TR><TD valign=top><em class=code>x</em></TD>
+    <TD>Contains state of input state vector on return</TD></TR>
+</TABLE>
 
- <!--================================================================-->
- <!--============= DESCRIPTION OF A SUBROUTINE =======================-->
-<A NAME="yyyroutine11"></A>
- <P></P><HR><P></P>
- <div class=routine>
- <em class=call> call copy_assim_model(model_out, model_in) </em>
- <pre>
- type(assim_model_type), intent(out) :: <em class=code>model_out</em>
- type(assim_model_type), intent(in)  :: <em class=code>model_in</em>
- </pre></div>
- <H3 class=indent1>Description</H3>
- <P>
+</div>
+<br>
+
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
+
+<A NAME="get_state_meta_data"></A>
+<br>
+<div class=routine>
+<em class=call> call get_state_meta_data() </em>
+</div>
+
+<div class=indent1>
+<!-- Description -->
+
+<P>
+Pass through to model_mod. 
+See model_mod documentation for arguments and description. 
+</P>
+
+</div>
+<br>
+
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
+
+<A NAME="get_model_time"></A>
+<br>
+<div class=routine>
+<em class=call> var = get_model_time(assim_model) </em>
+<pre>
+type(time_type)                    :: <em class=code>get_model_time</em>
+type(assim_model_type), intent(in) :: <em class=code>assim_model</em>
+</pre>
+</div>
+
+<div class=indent1>
+<!-- Description -->
+
+<P>
+Returns time from an assim_model type.
+</P>
+
+<TABLE width=100% border=0 summary="" cellpadding=3>
+<TR><TD valign=top><em class=code>var</em></TD>
+    <TD>Returned time from assim_model</TD></TR>
+<TR><TD valign=top><em class=code>assim_model&nbsp;&nbsp;&nbsp;</em></TD>
+    <TD>Assim_model type from which to extract time</TD></TR>
+</TABLE>
+
+</div>
+<br>
+
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
+
+<A NAME="get_model_state_vector"></A>
+<br>
+<div class=routine>
+<em class=call> var = get_model_state_vector(assim_model) </em>
+<pre>
+real(r8)                           :: <em class=code>get_model_state_vector(model_size)</em>
+type(assim_model_type), intent(in) :: <em class=code>assim_model</em>
+</pre>
+</div>
+
+<div class=indent1>
+<!-- Description -->
+
+<P>
+Returns the state vector component from an assim_model_type.
+</P>
+
+<TABLE width=100% border=0 summary="" cellpadding=3>
+<TR><TD valign=top><em class=code>var</em></TD>
+    <TD>Returned state vector</TD></TR>
+<TR><TD valign=top><em class=code>assim_model&nbsp;&nbsp;&nbsp;</em></TD>
+    <TD>Input assim_model_type</TD></TR>
+</TABLE>
+
+</div>
+<br>
+
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
+
+<A NAME="copy_assim_model"></A>
+<br>
+<div class=routine>
+<em class=call> call copy_assim_model(model_out, model_in) </em>
+<pre>
+type(assim_model_type), intent(out) :: <em class=code>model_out</em>
+type(assim_model_type), intent(in)  :: <em class=code>model_in</em>
+</pre>
+</div>
+
+<div class=indent1>
+<!-- Description -->
+
+<P>
 Copies one assim_model_type to another.
- </P>
- <TABLE width=100% border=0 summary="" celpadding=3>
- <TR><TD valign=top><em class=code>model_out&nbsp; &nbsp; </em></TD>
-     <TD>Copy.</TD></TR>
- <TR><TD valign=top><em class=code>model_in&nbsp; &nbsp; </em></TD>
-     <TD>Data to be copied.</TD></TR>
- </TABLE>
- <BR>
+</P>
 
- <!--================================================================-->
- <!--============= DESCRIPTION OF A SUBROUTINE =======================-->
-<A NAME="yyyroutine13"></A>
- <P></P><HR><P></P>
- <div class=routine>
- <em class=call> call interpolate(x, location, loctype, obs_vals, istatus) </em>
- <pre>
- real(r8), intent(in)            :: <em class=code>x(:)</em>
- type(location_type), intent(in) :: <em class=code>location</em>
- integer, intent(in)             :: <em class=code>loctype</em>
- real(r8), intent(out)           :: <em class=code>obs_vals</em>
- integer, intent(out)            :: <em class=code>istatus</em>
- </pre></div>
- <H3 class=indent1>Description</H3>
- <P>
+<TABLE width=100% border=0 summary="" cellpadding=3>
+<TR><TD valign=top><em class=code>model_out&nbsp;&nbsp;&nbsp;</em></TD>
+    <TD>Copy.</TD></TR>
+<TR><TD valign=top><em class=code>model_in</em></TD>
+    <TD>Data to be copied.</TD></TR>
+</TABLE>
+
+</div>
+<br>
+
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
+
+<A NAME="interpolate"></A>
+<br>
+<div class=routine>
+<em class=call> call interpolate(x, location, loctype, obs_vals, istatus) </em>
+<pre>
+real(r8),            intent(in)  :: <em class=code>x(:)</em>
+type(location_type), intent(in)  :: <em class=code>location</em>
+integer,             intent(in)  :: <em class=code>loctype</em>
+real(r8),            intent(out) :: <em class=code>obs_vals</em>
+integer,             intent(out) :: <em class=code>istatus</em>
+</pre>
+</div>
+
+<div class=indent1>
+<!-- Description -->
+
+<P>
 Interpolates a given model state variable type to a location given
 the model state vector. Nearly direct call to model_interpolate in
 model_mod.  See model_mod for the error return values in istatus.
- </P>
- <TABLE width=100% border=0 summary="" celpadding=3>
- <TR><TD valign=top><em class=code>x&nbsp; &nbsp; </em></TD>
-     <TD>Model state vector.</TD></TR>
- <TR><TD valign=top><em class=code>location&nbsp; &nbsp; </em></TD>
-     <TD>Location to which to interpolate.</TD></TR>
- <TR><TD valign=top><em class=code>loctype&nbsp; &nbsp; </em></TD>
-     <TD>Type of variable to interpolate.</TD></TR>
- <TR><TD valign=top><em class=code>obs_vals&nbsp; &nbsp; </em></TD>
-     <TD>Returned interpolated value.</TD></TR>
- <TR><TD valign=top><em class=code>istatus&nbsp; &nbsp; </em></TD>
-     <TD>Returned as 0 if all is well, else various errors.</TD></TR>
- </TABLE>
- <BR>
+</P>
 
- <!--================================================================-->
- <!--============= DESCRIPTION OF A SUBROUTINE =======================-->
-<A NAME="yyyroutine15"></A>
- <P></P><HR><P></P>
- <div class=routine>
- <em class=call> call set_model_time(assim_model, time) </em>
- <pre>
- type(assim_model_type), intent(inout) :: <em class=code>assim_model</em>
- type(time_type), intent(in)           :: <em class=code>time</em>
- </pre></div>
- <H3 class=indent1>Description</H3>
- <P>
- Sets the time in an assim_model_type.
- </P>
- <TABLE width=100% border=0 summary="" celpadding=3>
- <TR><TD valign=top><em class=code>assim_model&nbsp; &nbsp; </em></TD>
-     <TD>Set the time in this assim_model_type.</TD></TR>
- <TR><TD valign=top><em class=code>time&nbsp; &nbsp; </em></TD>
-     <TD>Set to this time</TD></TR>
- </TABLE>
- <BR>
+<TABLE width=100% border=0 summary="" cellpadding=3>
+<TR><TD valign=top><em class=code>x</em></TD>
+    <TD>Model state vector.</TD></TR>
+<TR><TD valign=top><em class=code>location&nbsp;&nbsp;&nbsp;</em></TD>
+    <TD>Location to which to interpolate.</TD></TR>
+<TR><TD valign=top><em class=code>loctype</em></TD>
+    <TD>Type of variable to interpolate.</TD></TR>
+<TR><TD valign=top><em class=code>obs_vals</em></TD>
+    <TD>Returned interpolated value.</TD></TR>
+<TR><TD valign=top><em class=code>istatus</em></TD>
+    <TD>Returned as 0 if all is well, else various errors.</TD></TR>
+</TABLE>
 
- <!--================================================================-->
- <!--============= DESCRIPTION OF A SUBROUTINE =======================-->
-<A NAME="yyyroutine16"></A>
- <P></P><HR><P></P>
- <div class=routine>
- <em class=call> call set_model_state_vector(assim_model, state) </em>
- <pre>
- type(assim_model_type), intent(inout) :: <em class=code>assim_model</em>
- real(r8), intent(in)                  :: <em class=code>state(:)</em>
- </pre></div>
- <H3 class=indent1>Description</H3>
- <P>
- Set the state in an assim_model_type.
- </P>
- <TABLE width=100% border=0 summary="" celpadding=3>
- <TR><TD valign=top><em class=code>assim_model&nbsp; &nbsp; </em></TD>
-     <TD>Set the state vector in this assim_model_type.</TD></TR>
- <TR><TD valign=top><em class=code>state&nbsp; &nbsp; </em></TD>
-     <TD>The state vector to be inserted.</TD></TR>
- </TABLE>
- <BR>
+</div>
+<br>
 
- <!--================================================================-->
- <!--============= DESCRIPTION OF A SUBROUTINE =======================-->
-<A NAME="yyyroutine17"></A>
- <P></P><HR><P></P>
- <div class=routine>
- <em class=call> call write_state_restart(assim_model, funit <em class=optionalcode>[, target_time]</em>) </em>
- <pre>
- type(assim_model_type), intent(in)    :: <em class=code>assim_model</em>
- integer, intent(in)                   :: <em class=code>funit</em>
- type(time_type), optional, intent(in) :: <em class=code>target_time</em>
- </pre></div>
- <H3 class=indent1>Description</H3>
- <P>
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
+
+<A NAME="set_model_time"></A>
+<br>
+<div class=routine>
+<em class=call> call set_model_time(assim_model, time) </em>
+<pre>
+type(assim_model_type), intent(inout) :: <em class=code>assim_model</em>
+type(time_type), intent(in)           :: <em class=code>time</em>
+</pre>
+</div>
+
+<!-- Description -->
+<div class=indent1>
+
+<P>
+Sets the time in an assim_model_type.
+</P>
+
+<TABLE width=100% border=0 summary="" cellpadding=3>
+<TR><TD valign=top><em class=code>assim_model&nbsp;&nbsp;&nbsp;</em></TD>
+    <TD>Set the time in this assim_model_type.</TD></TR>
+<TR><TD valign=top><em class=code>time</em></TD>
+    <TD>Set to this time</TD></TR>
+</TABLE>
+
+</div>
+<br>
+
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
+
+<A NAME="set_model_state_vector"></A>
+<br>
+<div class=routine>
+<em class=call> call set_model_state_vector(assim_model, state) </em>
+<pre>
+type(assim_model_type), intent(inout) :: <em class=code>assim_model</em>
+real(r8), intent(in)                  :: <em class=code>state(:)</em>
+</pre>
+</div>
+
+<div class=indent1>
+<!-- Description -->
+
+<P>
+Set the state in an assim_model_type.
+</P>
+
+<TABLE width=100% border=0 summary="" cellpadding=3>
+<TR><TD valign=top><em class=code>assim_model&nbsp;&nbsp;&nbsp;</em></TD>
+    <TD>Set the state vector in this assim_model_type.</TD></TR>
+<TR><TD valign=top><em class=code>state</em></TD>
+    <TD>The state vector to be inserted.</TD></TR>
+</TABLE>
+
+</div>
+<br>
+
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
+
+<A NAME="write_state_restart"></A>
+<br>
+<div class=routine>
+<em class=call> call write_state_restart(assim_model, funit 
+<em class=optionalcode>[,&nbsp;target_time]</em>) </em>
+<pre>
+type(assim_model_type),    intent(in) :: <em class=code>assim_model</em>
+integer,                   intent(in) :: <em class=code>funit</em>
+type(time_type), optional, intent(in) :: <em class=optionalcode>target_time</em>
+</pre>
+</div>
+
+<div class=indent1>
+<!-- Description -->
+
+<P>
 Writes a restart from an assim_model_type with an optional target_time.
- </P>
- <TABLE width=100% border=0 summary="" celpadding=3>
- <TR><TD valign=top><em class=code>assim_model&nbsp; &nbsp; </em></TD>
-     <TD>Write a restart from this assim_model_type.</TD></TR>
- <TR><TD valign=top><em class=code>funit&nbsp; &nbsp; </em></TD>
-     <TD>Integer file unit id open for output of restart files.</TD></TR>
- <TR><TD valign=top><em class=code>target_time&nbsp; &nbsp; </em></TD>
-     <TD>If present, put this target time at the front of the restart file.</TD></TR>
- </TABLE>
- <BR>
+</P>
 
- <!--================================================================-->
- <!--============= DESCRIPTION OF A SUBROUTINE =======================-->
-<A NAME="yyyroutine18"></A>
- <P></P><HR><P></P>
- <div class=routine>
- <em class=call> call read_state_restart(assim_model, funit <em class=optionalcode>[, target_time]</em>) </em>
- <pre>
- type(assim_model_type), intent(out)    :: <em class=code>assim_model</em>
- integer, intent(in)                    :: <em class=code>funit</em>
- type(time_type), optional, intent(out) :: <em class=code>target_time</em>
- </pre></div>
- <H3 class=indent1>Description</H3>
- <P>
-Read a state restart file into assim_model_type. Optionally read a prepended
-target time.
- </P>
- <TABLE width=100% border=0 summary="" celpadding=3>
- <TR><TD valign=top><em class=code>assim_model&nbsp; &nbsp; </em></TD>
-     <TD>Read the time and state vector from restart into this.</TD></TR>
- <TR><TD valign=top><em class=code>funit&nbsp; &nbsp; </em></TD>
-     <TD>File id that has been opened for reading restart files.</TD></TR>
- <TR><TD valign=top><em class=code>target_time&nbsp; &nbsp; </em></TD>
-     <TD>If present, read a target time from the front of the file into this.</TD></TR>
- </TABLE>
- <BR>
+<TABLE width=100% border=0 summary="" cellpadding=3>
+<TR><TD valign=top><em class=code>assim_model&nbsp;&nbsp;&nbsp;</em></TD>
+    <TD>Write a restart from this assim_model_type.</TD></TR>
+<TR><TD valign=top><em class=code>funit</em></TD>
+    <TD>Integer file unit id open for output of restart files.</TD></TR>
+<TR><TD valign=top><em class=optionalcode>target_time</em></TD>
+    <TD>If present, put this target time at the front of the restart file.</TD></TR>
+</TABLE>
 
- <!--================================================================-->
- <!--============= DESCRIPTION OF A SUBROUTINE =======================-->
-<A NAME="yyyroutine19"></A>
- <P></P><HR><P></P>
- <div class=routine>
- <em class=call> call output_diagnostics(ndFileID, state, copy_index) </em>
- <pre>
- type(netcdf_file_type), intent(inout) :: <em class=code>ndFileID</em>
- type(assim_model_type), intent(in)    :: <em class=code>state</em>
- integer, optional, intent(in)         :: <em class=code>copy_index</em>
- </pre></div>
- <H3 class=indent1>Description</H3>
- <P>
+</div>
+<br>
+
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
+
+
+<A NAME="read_state_restart"></A>
+<br>
+<div class=routine>
+<em class=call> call read_state_restart(assim_model, funit 
+<em class=optionalcode>[,&nbsp;target_time]</em>) </em>
+<pre>
+type(assim_model_type),    intent(out) :: <em class=code>assim_model</em>
+integer,                   intent(in)  :: <em class=code>funit</em>
+type(time_type), optional, intent(out) :: <em class=optionalcode>target_time</em>
+</pre>
+</div>
+
+<div class=indent1>
+<!-- Description -->
+
+<P>
+Read a state restart file into assim_model_type. 
+Optionally read a prepended target time.
+</P>
+
+<TABLE width=100% border=0 summary="" cellpadding=3>
+<TR><TD valign=top><em class=code>assim_model&nbsp;&nbsp;&nbsp;</em></TD>
+    <TD>Read the time and state vector from restart into this.</TD></TR>
+<TR><TD valign=top><em class=code>funit</em></TD>
+    <TD>File id that has been opened for reading restart files.</TD></TR>
+<TR><TD valign=top><em class=optionalcode>target_time</em></TD>
+    <TD>If present, read a target time from the front of the file into this.</TD></TR>
+</TABLE>
+
+</div>
+<br>
+
+<!--===================== DESCRIPTION OF A ROUTINE =====================-->
+
+<A NAME="output_diagnostics"></A>
+<br>
+<div class=routine>
+<em class=call> call output_diagnostics(ndFileID, state 
+<em class=optionalcode>[,&nbsp;copy_index]</em>) </em>
+<pre>
+type(netcdf_file_type), intent(inout) :: <em class=code>ndFileID</em>
+type(assim_model_type), intent(in)    :: <em class=code>state</em>
+integer, optional,      intent(in)    :: <em class=optionalcode>copy_index</em>
+</pre>
+</div>
+
+<div class=indent1>
+<!-- Description -->
+
+<P>
 Writes one copy of the state time and vector to a netCDF file.
- </P>
- <TABLE width=100% border=0 summary="" celpadding=3>
- <TR><TD valign=top><em class=code>ndFileID&nbsp; &nbsp; </em></TD>
-     <TD>An identifier for a netCDF file</TD></TR>
- <TR><TD valign=top><em class=code>state&nbsp; &nbsp; </em></TD>
-     <TD>State vector and time</TD></TR>
- <TR><TD valign=top><em class=code>copy_index&nbsp; &nbsp; </em></TD>
-     <TD>Which copy of state is to be output</TD></TR>
- </TABLE>
- <BR>
+</P>
 
- <!--================================================================-->
- <!--============= DESCRIPTION OF A SUBROUTINE =======================-->
-<A NAME="yyyroutine20"></A>
- <P></P><HR><P></P>
- <div class=routine>
- <em class=call> call end_assim_model() </em>
- <pre>
- </pre></div>
- <H3 class=indent1>Description</H3>
- <P>
-Called to clean-up at end of assim_model use. For now just passes through
-to model_mod.
- </P>
- <TABLE width=100% border=0 summary="" celpadding=3>
- </TABLE>
- <BR>
+<TABLE width=100% border=0 summary="" cellpadding=3>
+<TR><TD valign=top><em class=code>ndFileID</em></TD>
+    <TD>An identifier for a netCDF file</TD></TR>
+<TR><TD valign=top><em class=code>state</em></TD>
+    <TD>State vector and time</TD></TR>
+<TR><TD valign=top><em class=optionalcode>copy_index&nbsp;&nbsp;&nbsp;</em></TD>

@@ Diff output truncated at 40000 characters. @@


More information about the Dart-dev mailing list